Clone Sequence Records
BS05151.3prime Sequence
801 bp (776 high quality bases) assembled on 2005-12-02
> BS05151.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCATCTTATACCCCTCAGTATACCCA
TAGCTGTCAGCCAGTTCATAATCCTTGGAATAGCACTCAAAGAATTCGCC
CAAAACTTTGCCGTGTGGCAGTTCCCATGTGGCAGAACCACCGTATTTCG
GAGGCAAAGCCTTCGCCTCAATATGGGAGATCAGGGACTTGTAGTCCTTG
CCATGGAAGAAGATCCTCTTGCGCAGCTTTTCGCGAATGAATGGCTTGAA
TACGGCAAAGAGCATATTGAATATATATGAATTATTCACTATGTGAACTG
CTTTCAAACGCATGCAGATGCATTCTTGAATGTAATCCAGCAACATGGCG
GCAAATGACGGTGTAAATTGTGTAATGTGGCTAAGTGGCAGCCCTTCCAT
ATCGATAATGACAACTGAGCCGCAAATTTGTGAGTAGGGCTCCACCATAG
AACCCAGTACGGTCAATTGAATGCCGCGGAATAGATCCACCAAGGGCACT
TGCGATGGCTTCCATTTTTTGCCAGCTTCCAGCACCAAAAGCCGACGGCC
GTGTTGATCTCTTTGGGGCAGCAAATTCAGAATATTTGCCTCGAAAACGT
TTCTCAACTTGCTGGGGATTATGTTCTCGCAAGCGGCTCCATACTTCAAT
TTCATGTGATAAAAGTTCTTGAGCCTTTTCAAGGCACTTTCTGGATAGTA
ATGGGTGGGACGCAGGAACATCATCATATACTCATCATCCAATGGCAGGT
TCAGGTACTTTTCATTTTGAATGAGTTCCCTGAGTTCCTTGATGGCCTGC
T
BS05151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-PA | 936 | CG5973-RA | 152..936 | 801..17 | 3925 | 100 | Minus |
CG5973-PB | 936 | CG5973-RB | 152..936 | 801..17 | 3925 | 100 | Minus |
CG5973-PC | 936 | CG5973-RC | 152..936 | 801..17 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-RF | 1463 | CG5973-RF | 383..1167 | 801..17 | 3925 | 100 | Minus |
CG5973-RE | 2204 | CG5973-RE | 511..1295 | 801..17 | 3925 | 100 | Minus |
CG5973-RG | 1313 | CG5973-RG | 233..1017 | 801..17 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7444463..7444643 | 395..215 | 905 | 100 | Minus |
2L | 23513712 | 2L | 7444059..7444213 | 674..520 | 775 | 100 | Minus |
2L | 23513712 | 2L | 7444708..7444859 | 215..64 | 760 | 100 | Minus |
2L | 23513712 | 2L | 7444273..7444399 | 519..393 | 635 | 100 | Minus |
2L | 23513712 | 2L | 7443894..7443985 | 765..674 | 460 | 100 | Minus |
2L | 23513712 | 2L | 7444927..7444973 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:35:39 has no hits.
BS05151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:08 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-PC | 152..936 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:10 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-PC | 152..936 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:15:28 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RD | 1850..2637 | 14..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:50 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RG | 233..1020 | 14..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:50 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7444465..7444643 | 215..393 | 100 | -> | Minus |
2L | 7444709..7444859 | 64..214 | 100 | -> | Minus |
2L | 7444927..7444976 | 14..63 | 98 | | Minus |
2L | 7443797..7443832 | 766..801 | 100 | -> | Minus |
2L | 7444273..7444398 | 394..519 | 100 | -> | Minus |
2L | 7443894..7443985 | 674..765 | 100 | -> | Minus |
2L | 7444060..7444213 | 520..673 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:15:28 Download gff for
BS05151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7444273..7444398 | 394..519 | 100 | -> | Minus |
arm_2L | 7443797..7443832 | 766..801 | 100 | -> | Minus |
arm_2L | 7443894..7443985 | 674..765 | 100 | -> | Minus |
arm_2L | 7444060..7444213 | 520..673 | 100 | -> | Minus |
arm_2L | 7444465..7444643 | 215..393 | 100 | -> | Minus |
arm_2L | 7444709..7444859 | 64..214 | 100 | -> | Minus |
arm_2L | 7444927..7444976 | 14..63 | 98 | | Minus |
BS05151.5prime Sequence
851 bp (780 high quality bases) assembled on 2005-11-29
> BS05151.5prime
GAAGTTATCAGTCGACATGGGCAAGGCAGAGTGCATTAGCTACGATGAGC
ACAAGTTGCCCTACATCGATCTGGGCTCGGCACAGATCCGCATGGAGAAG
GAACAAGCGCCGGAATGGGCACTGAAGAAGGCACAGGATGAGTTGCGGGA
AGTGCCCGGCGTCAAGGAGCAGGCCATCAAGGAACTCAGGGAACTCATTC
AAAATGAAAAGTACCTGAACCTGCCATTGGATGATGAGTATATGATGATG
TTCCTGCGTCCCACCCATTACTATCCAGAAAGTGCCTTGAAAAGGCTCAA
GAACTTTTATCACATGAAATTGAAGTATGGAGCCGCTTGCGAGAACATAA
TCCCCAGCAAGTTGAGAAACGTTTTCGAGGCAAATATTCTGAATTTGCTG
CCCCAAAGAGATCAACACGGCCGTCGGCTTTTGGTGCTGGAAGCTGGCAA
AAAATGGAAGCCATCGCAAGTGCCCTTGGTGGATCTATTCCGCGGCATTC
AATTGACCGTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGC
TCAGTTGTCATTATCGATATGGAAGGGCTGCCACTTAGCCACATTACACA
ATTTACACCGTCATTTGCCGCCATGTTGCTGGATTACATTCAAGAATGCA
TCTGCATGCGTTTGAAAGCAGTTCACATAGTGAATAATTCATATATATTC
AATATGCTCTTTGCCGTATTCAAGCCATTCATTCGCGAAAAGCTGCGCAA
GAGGATCTTCTTCCATGGCAAGGACTACAAGTCCCTGATCTCCCATATTG
AGGCGAAGGCTTTGCCTCCGAAATACGGTGGTTCTGCCACATGGGAACTG
C
BS05151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-PA | 936 | CG5973-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
CG5973-PB | 936 | CG5973-RB | 1..835 | 17..851 | 4175 | 100 | Plus |
CG5973-PC | 936 | CG5973-RC | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-RF | 1463 | CG5973-RF | 231..1066 | 16..851 | 4180 | 100 | Plus |
CG5973-RE | 2204 | CG5973-RE | 359..1194 | 16..851 | 4180 | 100 | Plus |
CG5973-RG | 1313 | CG5973-RG | 81..916 | 16..851 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7443645..7443832 | 16..203 | 940 | 100 | Plus |
2L | 23513712 | 2L | 7444463..7444643 | 574..754 | 905 | 100 | Plus |
2L | 23513712 | 2L | 7444059..7444213 | 295..449 | 775 | 100 | Plus |
2L | 23513712 | 2L | 7444273..7444399 | 450..576 | 635 | 100 | Plus |
2L | 23513712 | 2L | 7444708..7444805 | 754..851 | 490 | 100 | Plus |
2L | 23513712 | 2L | 7443894..7443985 | 204..295 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:58:21 has no hits.
BS05151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:09 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-PC | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:12 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-PC | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:02 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RD | 1693..2533 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:58:16 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RG | 76..916 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:58:16 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7443640..7443832 | 9..203 | 97 | -> | Plus |
2L | 7443894..7443985 | 204..295 | 100 | -> | Plus |
2L | 7444060..7444213 | 296..449 | 100 | -> | Plus |
2L | 7444273..7444398 | 450..575 | 100 | -> | Plus |
2L | 7444465..7444643 | 576..754 | 100 | -> | Plus |
2L | 7444709..7444805 | 755..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:02 Download gff for
BS05151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7443640..7443832 | 9..203 | 97 | -> | Plus |
arm_2L | 7443894..7443985 | 204..295 | 100 | -> | Plus |
arm_2L | 7444060..7444213 | 296..449 | 100 | -> | Plus |
arm_2L | 7444273..7444398 | 450..575 | 100 | -> | Plus |
arm_2L | 7444465..7444643 | 576..754 | 100 | -> | Plus |
arm_2L | 7444709..7444805 | 755..851 | 100 | | Plus |
BS05151.complete Sequence
968 bp (968 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635064
> BS05151.complete
GAAGTTATCAGTCGACATGGGCAAGGCAGAGTGCATTAGCTACGATGAGC
ACAAGTTGCCCTACATCGATCTGGGCTCGGCACAGATCCGCATGGAGAAG
GAACAAGCGCCGGAATGGGCACTGAAGAAGGCACAGGATGAGTTGCGGGA
AGTGCCCGGCGTCAAGGAGCAGGCCATCAAGGAACTCAGGGAACTCATTC
AAAATGAAAAGTACCTGAACCTGCCATTGGATGATGAGTATATGATGATG
TTCCTGCGTCCCACCCATTACTATCCAGAAAGTGCCTTGAAAAGGCTCAA
GAACTTTTATCACATGAAATTGAAGTATGGAGCCGCTTGCGAGAACATAA
TCCCCAGCAAGTTGAGAAACGTTTTCGAGGCAAATATTCTGAATTTGCTG
CCCCAAAGAGATCAACACGGCCGTCGGCTTTTGGTGCTGGAAGCTGGCAA
AAAATGGAAGCCATCGCAAGTGCCCTTGGTGGATCTATTCCGCGGCATTC
AATTGACCGTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGC
TCAGTTGTCATTATCGATATGGAAGGGCTGCCACTTAGCCACATTACACA
ATTTACACCGTCATTTGCCGCCATGTTGCTGGATTACATTCAAGAATGCA
TCTGCATGCGTTTGAAAGCAGTTCACATAGTGAATAATTCATATATATTC
AATATGCTCTTTGCCGTATTCAAGCCATTCATTCGCGAAAAGCTGCGCAA
GAGGATCTTCTTCCATGGCAAGGACTACAAGTCCCTGATCTCCCATATTG
AGGCGAAGGCTTTGCCTCCGAAATACGGTGGTTCTGCCACATGGGAACTG
CCACACGGCAAAGTTTTGGGCGAATTCTTTGAGTGCTATTCCAAGGATTA
TGAACTGGCTGACAGCTATGGGTATACTGAGGGGTATAAGATGAAGAAGT
AAAAGCTTTCTAGACCAT
BS05151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-RF | 936 | CG5973-PF | 1..936 | 17..952 | 4680 | 100 | Plus |
CG5973-RE | 936 | CG5973-PE | 1..936 | 17..952 | 4680 | 100 | Plus |
CG5973-RG | 936 | CG5973-PG | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-RF | 1463 | CG5973-RF | 231..1167 | 16..952 | 4685 | 100 | Plus |
CG5973-RE | 2204 | CG5973-RE | 359..1295 | 16..952 | 4685 | 100 | Plus |
CG5973-RG | 1313 | CG5973-RG | 81..1017 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7443645..7443832 | 16..203 | 940 | 100 | Plus |
2L | 23513712 | 2L | 7444463..7444643 | 574..754 | 905 | 100 | Plus |
2L | 23513712 | 2L | 7444059..7444213 | 295..449 | 775 | 100 | Plus |
2L | 23513712 | 2L | 7444708..7444859 | 754..905 | 760 | 100 | Plus |
2L | 23513712 | 2L | 7444273..7444399 | 450..576 | 635 | 100 | Plus |
2L | 23513712 | 2L | 7443894..7443985 | 204..295 | 460 | 100 | Plus |
2L | 23513712 | 2L | 7444927..7444973 | 906..952 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:51:50 has no hits.
BS05151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:13 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RC | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:53 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RC | 86..1030 | 9..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:11 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RD | 1699..2632 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:14 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RC | 86..1030 | 9..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:25 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5973-RG | 82..1015 | 17..950 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:25 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7443646..7443832 | 17..203 | 100 | -> | Plus |
2L | 7443894..7443985 | 204..295 | 100 | -> | Plus |
2L | 7444060..7444213 | 296..449 | 100 | -> | Plus |
2L | 7444273..7444398 | 450..575 | 100 | -> | Plus |
2L | 7444465..7444643 | 576..754 | 100 | -> | Plus |
2L | 7444709..7444859 | 755..905 | 100 | -> | Plus |
2L | 7444927..7444971 | 906..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:11 Download gff for
BS05151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7443646..7443832 | 17..203 | 100 | -> | Plus |
arm_2L | 7443894..7443985 | 204..295 | 100 | -> | Plus |
arm_2L | 7444060..7444213 | 296..449 | 100 | -> | Plus |
arm_2L | 7444273..7444398 | 450..575 | 100 | -> | Plus |
arm_2L | 7444465..7444643 | 576..754 | 100 | -> | Plus |
arm_2L | 7444709..7444859 | 755..905 | 100 | -> | Plus |
arm_2L | 7444927..7444971 | 906..950 | 100 | | Plus |
BS05151.pep Sequence
Translation from 16 to 951
> BS05151.pep
MGKAECISYDEHKLPYIDLGSAQIRMEKEQAPEWALKKAQDELREVPGVK
EQAIKELRELIQNEKYLNLPLDDEYMMMFLRPTHYYPESALKRLKNFYHM
KLKYGAACENIIPSKLRNVFEANILNLLPQRDQHGRRLLVLEAGKKWKPS
QVPLVDLFRGIQLTVLGSMVEPYSQICGSVVIIDMEGLPLSHITQFTPSF
AAMLLDYIQECICMRLKAVHIVNNSYIFNMLFAVFKPFIREKLRKRIFFH
GKDYKSLISHIEAKALPPKYGGSATWELPHGKVLGEFFECYSKDYELADS
YGYTEGYKMKK*
BS05151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5973-PF | 311 | CG5973-PF | 1..311 | 1..311 | 1641 | 100 | Plus |
CG5973-PE | 311 | CG5973-PE | 1..311 | 1..311 | 1641 | 100 | Plus |
CG5973-PG | 311 | CG5973-PG | 1..311 | 1..311 | 1641 | 100 | Plus |
CG5973-PD | 311 | CG5973-PD | 1..311 | 1..311 | 1641 | 100 | Plus |
CG5973-PC | 311 | CG5973-PC | 1..311 | 1..311 | 1641 | 100 | Plus |