Clone Sequence Records
BS05165.3prime Sequence
850 bp (798 high quality bases) assembled on 2005-12-02
> BS05165.3prime
ATGGTCTAGAAAGCTTTCAAGCTTTCTCTTGTTCGCCTACAGGTTTTTTC
TTATTTTCCCGGACCACCTCCTCTGAGTTATCCTTATCCACAGCTTTCCC
CACGATCTCCTTCTTTTCAGATTTCGCCGAAACTTCCTTCTTTTCCGGTT
TCTCTCTGATTTCATTTGTTTTAGTTTCGCCTGTGACCGACACCGCTTCT
TCATCACCTGAATGTGACTCATTGTCTTTGTCCAATCCACCTTCGTCCTG
ATCCTCATCTCCCAGTACATATTCGATCACATCGTCGATGGGGAAATTAT
TGAGCAGCGACTTGATGGAATCGTTGTGAATGACCACGGTAAAGAGCAGT
TTGCAGTACTCTCGCATGCGGCTACCGTAGTCAAGCTCAGCGTAGTTTTC
GCCACCTTTGGTTAGGTCGTGGCCACAGTTCTCGATCACTTTGCAGAGCA
CCGTCTCCTCGGGGGCATTGGGCCAGCCGTATTTCTTTAGGATCGGTGGA
TCCACTAGCATATCAATAAGTTTACCCACATTCTCTTTGAGCTTTATGTC
CTCCTCAGTTAGAATTTCGCCACTGAAGTCATCCTCGCTACATGATTCTT
CCAAATTATCTGCGATGGCAGCGGCCAGACTGGCGGCCAGGGATTTACGC
TGCTCTTTCTTTACCACCGGCGAGACCTGCGCCTCCTCCTTCTTCGCCTC
GGGCTTAACGCCAGCCTCATCCGTCAGCTGCTCTCCCTCGATGGCCCCGT
CCAGGGGCAGAATTGTGTATGTTTCGTTTTCTAGTGTAATGGTCTGGGCC
GCGCCATCGCCTTCGTCCACGAGGAAATTCCGCACCACAACGCCATTCCC
BS05165.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8573-PA | 2826 | su(Hw)-RA | 2017..2826 | 826..17 | 4050 | 100 | Minus |
| CG8573-PB | 2826 | su(Hw)-RB | 2017..2826 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-RC | 3682 | CG8573-RC | 2496..3329 | 850..17 | 4125 | 99.8 | Minus |
| su(Hw)-RB | 3508 | CG8573-RB | 2322..3155 | 850..17 | 4125 | 99.8 | Minus |
| su(Hw)-RA | 3260 | CG8573-RA | 2074..2907 | 850..17 | 4125 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14304808..14305641 | 17..850 | 4125 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:23:55 has no hits.
BS05165.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:33 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8573-PA | 1993..2826 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:44 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8573-PB | 1993..2826 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:04:17 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 2052..2890 | 9..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:52 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 2074..2912 | 9..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:52 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14304803..14305641 | 9..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:04:17 Download gff for
BS05165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10130525..10131363 | 9..850 | 99 | | Plus |
BS05165.5prime Sequence
812 bp (784 high quality bases) assembled on 2005-12-02
> BS05165.5prime
GAAGTTATCAGTCGACATGAGTGCCTCCAAGGAGGGCAAGGAAAAGAAGG
GCAAGCTGCTGGGTGTGGAAAACATTTCGCCGCCTAAGGACAAACGTCCC
GCCACCAGGATGAAGCTCTTGAATGACGTGGGAGCTGGTGAGGATTCGGA
GGCAAGCACTACTACTACCACATCAAGAACTCCCTCCAACAAGCAGGAGA
AGCGTGGCAGTGTCGCTGGATCGCGCATCAAAATACTCAATGAAGAAATA
CTGGGCACTCCGAAAACTGAGAAACGGGGCGCCACAAAGAGCACAGCTCC
GGCTGCTTCCACTGTGAAGATTCTGAACGAGAAAAAGACACCCAGTGCTA
CCGTGACAGCCGTGGAAACTACCAAGATCAAGACGTCTCCCAGTAAAAGA
AAGAAAATGGAGCACTATGTACTTCAGGCTGTGAAATCAGAAAATACCAA
GGCGGACACCACGGTTACCGTGGTCACCGAAGAAGATGACACCATTGATT
TCATTCTAGCGGATGATGAGGAAGTAGTTCCGGGCAGAATAGAAAATAAC
AACGGCCAGGAGATCGTTGTCACCGAGGACGATGAGGATCTAGGGGAGGA
TGGTGATGAGGACGGTGAAGACTCCTCAGGCAAGGGCAACTCTAGCCAGA
CAAAGATCAAGGAGATCGTGGAGCATGTGTGTGGCAAATGCTACAAGACC
TTCCGTCGCGTTCAGAGTCTGAAAAAGCATCTAGAGTTCTGTCGCTATGA
CAGTGGGTATCATTTGCGCAAAGCCGACATGCTTAAGAACCTGGAGAAGA
TCGAGAAGGATG
BS05165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8573-PA | 2826 | su(Hw)-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
| CG8573-PB | 2826 | su(Hw)-RB | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-RC | 3682 | CG8573-RC | 502..1299 | 15..812 | 3990 | 100 | Plus |
| su(Hw)-RB | 3508 | CG8573-RB | 328..1125 | 15..812 | 3990 | 100 | Plus |
| su(Hw)-RA | 3260 | CG8573-RA | 80..877 | 15..812 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14307160..14307957 | 812..15 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:06:01 has no hits.
BS05165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:34 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8573-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:45 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8573-PB | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:38 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 50..855 | 6..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:35 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 72..877 | 6..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:35 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14307160..14307965 | 6..812 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:38 Download gff for
BS05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10132882..10133687 | 6..812 | 99 | | Minus |
BS05165.complete Sequence
2858 bp assembled on 2010-05-10
GenBank Submission: KX795217
> BS05165.complete
GAAGTTATCAGTCGACATGAGTGCCTCCAAGGAGGGCAAGGAAAAGAAGG
GCAAGCTGCTGGGTGTGGAAAACATTTCGCCGCCTAAGGACAAACGTCCC
GCCACCAGGATGAAGCTCTTGAATGACGTGGGAGCTGGTGAGGATTCGGA
GGCAAGCACTACTACTACCACATCAAGAACTCCCTCCAACAAGCAGGAGA
AGCGTGGCAGTGTCGCTGGATCGCGCATCAAAATACTCAATGAAGAAATA
CTGGGCACTCCGAAAACTGAGAAACGGGGCGCCACAAAGAGCACAGCTCC
GGCTGCTTCCACTGTGAAGATTCTGAACGAGAAAAAGACACCCAGTGCTA
CCGTGACAGCCGTGGAAACTACCAAGATCAAGACGTCTCCCAGTAAAAGA
AAGAAAATGGAGCACTATGTACTTCAGGCTGTGAAATCAGAAAATACCAA
GGCGGACACCACGGTTACCGTGGTCACCGAAGAAGATGACACCATTGATT
TCATTCTAGCGGATGATGAGGAAGTAGTTCCGGGCAGAATAGAAAATAAC
AACGGCCAGGAGATCGTTGTCACCGAGGACGATGAGGATCTAGGGGAGGA
TGGTGATGAGGACGGTGAAGACTCCTCAGGCAAGGGCAACTCTAGCCAGA
CAAAGATCAAGGAGATCGTGGAGCATGTGTGTGGCAAATGCTACAAGACC
TTCCGTCGCGTTCAGAGTCTGAAAAAGCATCTAGAGTTCTGTCGCTATGA
CAGTGGGTATCATTTGCGCAAAGCCGACATGCTTAAGAACCTGGAGAAGA
TCGAGAAGGATGCCGTGGTGATGGAGAAGAAGGACATATGCTTCTGCTGC
AGCGAAAGTTACGACACCTTCCATCTGGGTCACATTAACTGTCCCGACTG
CCCCAAGTCGTTTAAGACACAGACCAGTTACGAACGCCACATTTTCATCA
CTCACTCCGAGTTCAGCGATTTTCCTTGCTCCATTTGCAATGCCAACTTG
CGCAGCGAGGCCTTGTTGGCGCTCCACGAGGAACAGCACAAGTCACGTGG
CAAGCCGTATGCATGCAAGATCTGCGGCAAGGACTTCACCCGCTCGTACC
ACTTGAAGCGCCACCAGAAGTACTCATCGTGCTCATCGAACGAGACCGAT
ACCATGAGCTGCAAGGTGTGCGATCGTGTCTTCTATCGGCTGGACAACCT
GCGATCGCATTTGAAGCAGCATTTGGGTACACAGGTGGTTAAAAAGCCGG
AGTACATGTGCCACACGTGCAAGAATTGTTTCTACAGCCTGTCCACGCTG
AACATTCACATACGCACTCATACGGGGGAGAAACCATTTGACTGCGATCT
TTGCGACAAGAAGTTTTCTGCATTGGTGGCCCTTAAAAAGCATCGACGCT
ATCACACTGGCGAGAAACCATACAGTTGCACTGTGTGCAACCAAGCATTT
GCCGTAAAGGAAGTGCTCAATCGTCACATGAAACGGCACACTGGAGAGCG
TCCGCACAAGTGTGATGAATGTGGCAAGAGTTTTATCCAGGCCACCCAGC
TGCGCACCCATTCCAAAACCCATATTCGCCCCTTTCCCTGTGAGCAATGC
GACGAAAAATTCAAAACAGAGAAACAACTTGAGCGCCATGTGAAGACCCA
TTCTCGCACAAAACGCCCCGTCTTTTCCTGCGCCGAGTGCAAGCGTAATT
TCCGCACTCCAGCATTGCTCAAGGAGCATATGGACGAGGGAAAACACAGC
CCGAAACAACAACGGTCATCAATGCGATCGGCCGTCAAAATTATGGAACG
CACGGATTGCGCCATTTGCGATAAGAACTTTGACAGCAGCGATACCCTGC
GACGGCACATACGCACCGTTCACGAATGCGATCCGGATGACATTTTTGGC
GTTGAGCCGCATCCATCAAAGCGGGCAAAGAAGGACATCGAATCGGAGGA
GGTTGTACCAGTGGCGTTAAACACATCGGCGGGCTCGTTAATTTCTAGCC
AAACGGACGGGAATGGCGTTGTGGTGCGTGAATTCCTCGTGGACGAAGGC
GATGGCGCGGCCCAGACCATTACACTAGAAAACGAAACATACACAATTCT
GCCCCTGGACGGGGCCATCGAGGGAGAGCAGCTGACGGATGAGGCTGGCG
TTAAGCCCGAGGCGAAGAAGGAGGAGGCGCAGGTCTCGCCGGTGGTAAAG
AAAGAGCAGCGTAAATCCCTGGCCGCCAGTCTGGCCGCTGCCATCGCAGA
TAATTTGGAAGAATCATGTAGCGAGGATGACTTCAGTGGCGAAATTCTAA
CTGAGGAGGACATAAAGCTCAAAGAGAATGTGGGTAAACTTATTGATATG
CTAGTGGATCCACCGATCCTAAAGAAATACGGCTGGCCCAATGCCCCCGA
GGAGACGGTGCTCTGCAAAGTGATCGAGAACTGTGGCCACGACCTAACCA
AAGGTGGCGAAAACTACGCTGAGCTTGACTACGGTAGCCGCATGCGAGAG
TACTGCAAACTGCTCTTTACCGTGGTCATTCACAACGATTCCATCAAGTC
GCTGCTCAATAATTTCCCCATCGACGATGTGATCGAATATGTACTGGGAG
ATGAGGATCAGGACGAAGGTGGATTGGACAAAGACAATGAGTCACATTCA
GGTGATGAAGAAGCGGTGTCGGTCACAGGCGAAACTAAAACAAATGAAAT
CAGAGAGAAACCGGAAAAGAAGGAAGTTTCGGCGAAATCTGAAAAGAAGG
AGATCGTGGGGAAAGCTGTGGATAAGGATAACTCAGAGGAGGTGGTCCGG
GAAAATAAGAAAAAACCTGTAGGCGAACAAGAGAAAGCTTGAAAGCTTTC
TAGACCAT
BS05165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-RC | 2826 | CG8573-PC | 1..2826 | 17..2842 | 14130 | 100 | Plus |
| su(Hw)-RB | 2826 | CG8573-PB | 1..2826 | 17..2842 | 14130 | 100 | Plus |
| su(Hw)-RA | 2826 | CG8573-PA | 1..2826 | 17..2842 | 14130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-RC | 3682 | CG8573-RC | 502..3329 | 15..2842 | 14140 | 100 | Plus |
| su(Hw)-RB | 3508 | CG8573-RB | 328..3155 | 15..2842 | 14140 | 100 | Plus |
| su(Hw)-RA | 3260 | CG8573-RA | 80..2907 | 15..2842 | 14140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14304808..14305898 | 2842..1752 | 5455 | 100 | Minus |
| 3R | 32079331 | 3R | 14307098..14307957 | 874..15 | 4300 | 100 | Minus |
| 3R | 32079331 | 3R | 14306604..14307039 | 1302..867 | 2150 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14306153..14306344 | 1626..1435 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 14306414..14306546 | 1435..1303 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 14305960..14306084 | 1751..1627 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:32 has no hits.
BS05165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:42 Download gff for
BS05165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RB | 328..3152 | 17..2841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:23 Download gff for
BS05165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 60..2884 | 17..2841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:53 Download gff for
BS05165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(Hw)-RA | 82..2906 | 17..2841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:53 Download gff for
BS05165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14304809..14305898 | 1752..2841 | 100 | <- | Minus |
| 3R | 14305960..14306084 | 1627..1751 | 100 | <- | Minus |
| 3R | 14306153..14306343 | 1436..1626 | 100 | <- | Minus |
| 3R | 14306414..14306546 | 1303..1435 | 100 | <- | Minus |
| 3R | 14306604..14307031 | 875..1302 | 100 | <- | Minus |
| 3R | 14307098..14307955 | 17..874 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:23 Download gff for
BS05165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10130531..10131620 | 1752..2841 | 100 | <- | Minus |
| arm_3R | 10131682..10131806 | 1627..1751 | 100 | <- | Minus |
| arm_3R | 10131875..10132065 | 1436..1626 | 100 | <- | Minus |
| arm_3R | 10132136..10132268 | 1303..1435 | 100 | <- | Minus |
| arm_3R | 10132326..10132753 | 875..1302 | 100 | <- | Minus |
| arm_3R | 10132820..10133677 | 17..874 | 100 | | Minus |
BS05165.pep Sequence
Translation from 16 to 2841
> BS05165.pep
MSASKEGKEKKGKLLGVENISPPKDKRPATRMKLLNDVGAGEDSEASTTT
TTSRTPSNKQEKRGSVAGSRIKILNEEILGTPKTEKRGATKSTAPAASTV
KILNEKKTPSATVTAVETTKIKTSPSKRKKMEHYVLQAVKSENTKADTTV
TVVTEEDDTIDFILADDEEVVPGRIENNNGQEIVVTEDDEDLGEDGDEDG
EDSSGKGNSSQTKIKEIVEHVCGKCYKTFRRVQSLKKHLEFCRYDSGYHL
RKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFK
TQTSYERHIFITHSEFSDFPCSICNANLRSEALLALHEEQHKSRGKPYAC
KICGKDFTRSYHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLK
QHLGTQVVKKPEYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKF
SALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCD
ECGKSFIQATQLRTHSKTHIRPFPCEQCDEKFKTEKQLERHVKTHSRTKR
PVFSCAECKRNFRTPALLKEHMDEGKHSPKQQRSSMRSAVKIMERTDCAI
CDKNFDSSDTLRRHIRTVHECDPDDIFGVEPHPSKRAKKDIESEEVVPVA
LNTSAGSLISSQTDGNGVVVREFLVDEGDGAAQTITLENETYTILPLDGA
IEGEQLTDEAGVKPEAKKEEAQVSPVVKKEQRKSLAASLAAAIADNLEES
CSEDDFSGEILTEEDIKLKENVGKLIDMLVDPPILKKYGWPNAPEETVLC
KVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKSLLNNF
PIDDVIEYVLGDEDQDEGGLDKDNESHSGDEEAVSVTGETKTNEIREKPE
KKEVSAKSEKKEIVGKAVDKDNSEEVVRENKKKPVGEQEKA*
BS05165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(Hw)-PC | 941 | CG8573-PC | 1..941 | 1..941 | 4957 | 100 | Plus |
| su(Hw)-PB | 941 | CG8573-PB | 1..941 | 1..941 | 4957 | 100 | Plus |
| su(Hw)-PA | 941 | CG8573-PA | 1..941 | 1..941 | 4957 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 230..565 | 292..616 | 491 | 30.4 | Plus |
| Meics-PA | 583 | CG8474-PA | 242..577 | 292..616 | 491 | 30.4 | Plus |
| Meics-PB | 571 | CG8474-PB | 230..544 | 321..648 | 421 | 28 | Plus |
| Meics-PB | 571 | CG8474-PB | 164..571 | 152..549 | 415 | 26.9 | Plus |
