Clone BS05171 Report

Search the DGRC for BS05171

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCals-RA
Protein status:BS05171.pep: full length peptide match
Sequenced Size:2969

Clone Sequence Records

BS05171.3prime Sequence

950 bp (823 high quality bases) assembled on 2005-12-02

> BS05171.3prime
ATGGTCTAGAAAGCTTTTACTGTTGGAAAATATTAGAGTTATCCCATTCG
AGTTGATTGATGTGAGTGAATCCGTCCTTTAAAGCTTCTTCATCTTCAGA
TTCAGAATTTTCTGATTCAGAACTCGCGTCCGATGTAACATCTGCTTGCA
TGGGATTTATAGTTATAGTCAAAGCTGAGTCATCCCAAATTAAACCATCA
TCAGAAATTTTTGGACATGGTTGATGGTGTTCAATATATTTTTGGTTGTT
TTTTAAACGTGCAATCGAGACTCCACAAAGTAAGACCGCCAAAAAAACAC
TTACAAGAATTATAAGCATTGTAACATGTGACCCTTCAGCTTTGTGTATG
AAAGAATGAATGTGAGATTTTGGTTCTTGCACATTATTGGTATGCAGAAG
GGAATATGAATATACCTTAGACTCTGTTGGCTGATTATTATCATTGCCAT
TTACCGAACCACTATTCCGGTGAAATGATGTTTCATTATCGGTGTTGCCA
ATAAAGTTTACTTTAGATAACGATGAAGGGAGTACATTTGTAGACTTAAA
CAATGTCTGTTTAGGATGCAACACAGTAAGTGTTAGTGTATATTCACCGC
TTTTGTACTGGGAACTTTGTTGGGCACAAGAAAGCTTAAATACACGGTTA
AGATAATATGCAGGTTTTTTGTTACTGTATACAAGAGATCGTAATACATT
TATATAATTGCTAATGGTATCCTTTCCAATCATTTCGACTCCATCCTTAT
TAATATTAGTCTTAATGTCCATGCTAGATGACAATGACTCGTCACCATCT
ATTTTAATGTCTTCATGATCGGGATTCAAAGAGGGAAATACAACGACGCT
GCATGAGTCGATATGATTTTTCTCTTCTAATTTTTCATTGTTTTTAGATA
CCGAGTCAATGCAAGTTTTTTCCCAAATGTGTACGCCCAATTTATTTTCT

BS05171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11059-PA 2937 cals-RA 2004..2937 950..17 4595 99.6 Minus
CG11059-PB 2937 cals-RB 2004..2937 950..17 4595 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cals-RD 6077 CG11059-RD 2191..3125 950..16 4630 99.7 Minus
Cals-RB 3872 CG11059-RB 2191..3125 950..16 4630 99.7 Minus
Cals-RA 3693 CG11059-RA 2188..3122 950..16 4630 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1116660..1117186 424..950 2590 99.4 Plus
4 1348131 4 1116326..1116458 209..341 665 100 Plus
4 1348131 4 1115956..1116079 85..208 620 100 Plus
4 1348131 4 1116515..1116600 340..425 430 100 Plus
4 1348131 4 1115826..1115896 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:15:14 has no hits.

BS05171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:45 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
cals-PA 2004..2937 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:59 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11059-PB 2004..2937 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:38 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
Cals-RA 2188..3122 16..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:42 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
Cals-RA 2188..3122 16..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:42 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1116326..1116456 209..339 100 <- Plus
4 1116515..1116598 340..423 100 <- Plus
4 1115826..1115894 16..84 100 <- Plus
4 1115956..1116079 85..208 100 <- Plus
4 1116660..1117186 424..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:38 Download gff for BS05171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1136452..1136520 16..84 100 <- Plus
arm_4 1136582..1136705 85..208 100 <- Plus
arm_4 1136952..1137082 209..339 100 <- Plus
arm_4 1137141..1137224 340..423 100 <- Plus
arm_4 1137286..1137812 424..950 99   Plus

BS05171.5prime Sequence

852 bp (732 high quality bases) assembled on 2005-12-02

> BS05171.5prime
GAAGTTATCAGTCGACATGACGTTTCACAAAACCTTTGGTTACGGATGCA
TTGTATTAATATGTTTTGAACTCCTGTTTGCTGGAGTTGAAACGTCCAGC
GAAAATGATGATGAATATTTAACACAGAAAGAAATCATATTAGAAAAGTC
ATATCACGGTTTAATTCGAGAAAATGAAACACTTGTAGAAATAACTCCCC
TTATTAAAGTGAACGAAGAGAAAATTTGTAACTTCCATATTCTCAAAAAA
CCGTATCACGAAATTCCATTTAAGATTGAACTGGTAAATAACCTAGGTAT
TTTAAAAGCACGTCGGACACTAAATTGCGAGAATCGTAAAAGTTATCACT
TTGAAATCTGTGCAATCTATTGTGATGGAACACCTTCAAATACAGCCAAT
GTTCATATTACTGTTATCGACGTAAATGAGTATGCTCCAACATTCTTAGA
ACCGTCTTACGTAATTGAAGTAGACGAGGGAAGACTTTATAACGAGATCC
TAAGAGTCGAAGCTTCCGATAAAGACTGCACTCCGCTCTTTGGTGATGTT
TGCAAATATGAGATTCTTAACAATGATGAACCATTTTCAATAGATAACGA
AGGTTCAATTAAAAACACTGAACCACTTTCTCACAAAGCTTCTCATAACC
ACATTCTGTCCGTGGTTGCCTATGATTGTGCAATGAAAGAATCTGCACCC
ATTATGGTCAGCATTAAAGTTCGACGCGTTTGTGAAACAAAGTTTGTAGG
CATGCCAGAACGCATTGACTACACGTCTGGAAGCACCGAAAGCCTTCAAT
TGTTTCCCAATGCTCGCCTAGACTTATGTGACATTTCTTGCAAAAATGAA
GA

BS05171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11059-PA 2937 cals-RA 1..836 17..852 4180 100 Plus
CG11059-PB 2937 cals-RB 1..836 17..852 4180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cals-RD 6077 CG11059-RD 187..1023 16..852 4185 100 Plus
Cals-RC 3696 CG11059-RC 184..1020 16..852 4185 100 Plus
Cals-RB 3872 CG11059-RB 187..1023 16..852 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1120106..1120613 775..268 2525 99.8 Minus
4 1348131 4 1120659..1120803 274..130 725 100 Minus
4 1348131 4 1121459..1121574 131..16 580 100 Minus
4 1348131 4 1119971..1120048 852..775 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:20:20 has no hits.

BS05171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:46 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
cals-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:01 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11059-PB 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:58:27 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
Cals-RA 177..1019 7..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:29 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
Cals-RB 180..1022 7..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:29 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1119972..1120047 776..851 100 <- Minus
4 1120106..1120606 275..775 100 <- Minus
4 1120659..1120801 132..274 100 <- Minus
4 1121459..1121581 7..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:58:27 Download gff for BS05171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1140598..1140673 776..851 100 <- Minus
arm_4 1140732..1141232 275..775 100 <- Minus
arm_4 1141285..1141427 132..274 100 <- Minus
arm_4 1142085..1142207 7..131 96   Minus

BS05171.complete Sequence

2969 bp assembled on 2010-05-10

GenBank Submission: KX797841

> BS05171.complete
GAAGTTATCAGTCGACATGACGTTTCACAAAACCTTTGGTTACGGATGCA
TTGTATTAATATGTTTTGAACTCCTGTTTGCTGGAGTTGAAACGTCCAGC
GAAAATGATGATGAATATTTAACACAGAAAGAAATCATATTAGAAAAGTC
ATATCACGGTTTAATTCGAGAAAATGAAACACTTGTAGAAATAACTCCCC
TTATTAAAGTGAACGAAGAGAAAATTTGTAACTTCCATATTCTCAAAAAA
CCGTATCACGAAATTCCATTTAAGATTGAACTGGTAAATAACCTAGGTAT
TTTAAAAGCACGTCGGACACTAAATTGCGAGAATCGTAAAAGTTATCACT
TTGAAATCTGTGCAATCTATTGTGATGGAACACCTTCAAATACAGCCAAT
GTTCATATTACTGTTATCGACGTAAATGAGTATGCTCCAACATTCTTAGA
ACCGTCTTACGTAATTGAAGTAGACGAGGGAAGACTTTATAACGAGATCC
TAAGAGTCGAAGCTTCCGATAAAGACTGCACTCCGCTCTTTGGTGATGTT
TGCAAATATGAGATTCTTAACAATGATGAACCATTTTCAATAGATAACGA
AGGTTCAATTAAAAACACTGAACCACTTTCTCACAAAGCTTCTCATAACC
ACATTCTGTCCGTGGTTGCCTATGATTGTGCAATGAAAGAATCTGCACCC
ATTATGGTCAGCATTAAAGTTCGACGCGTTTGTGAAACAAAGTTTGTAGG
CATGCCAGAACGCATTGACTACACGTCTGGAAGCACCGAAAGCCTTCAAT
TGTTTCCCAATGCTCGCCTAGACTTATGTGACATTTCTTGCAAAAATGAA
GAAGACCTTAGGATTCATTCTTCCATAGCCCTTAAGACAAAGCACATCTC
ATTTGGGTGCGATCGGGATATATCTAATTGCACTTCAGGCCAAAAAGTGA
AAGACCTTTTGCCACATGGGGCAGAATGGACTAAAGAGTTAAGTTATGAC
GAAGGTCTAGAACCCATATTTCACTTTGATGGGTCTACTGGAGTAGTAGT
TCCTGCAACTGTTATTGATCATTACGATTTTTCATCGCAACCTTTTAGCA
TTCTTACCTTATTTCGACACAACAGTCAGGTTGAAATTAATAAACATGTA
AAGGAGCATATTGTCTGCAGCGCGGACGACCACAAAATGAACCGTCATCA
TATGGCACTATTCGTTCGCAATTGTCGCCTTATTTTTTTATTAAGAAAAA
ATTTTAACGAAGGTGATTTAAATATCTTTAGTCCTGCTGAATGGCGTTGG
AAAATACCGGAGGTCTGTGACAACGAATGGCATCACTATGTTCTCAATGT
TGAAGATTCGTCCAAAGTAGATTTATTTATTGACGGCGTACGTTTCGAAA
ATTCTATTGAAAATCGTCATAGCAACCCAGAAGTAATTGACGATTGGCCC
TTACACGCAGCCCACGGAGTAAATACTTCCTTAGCTATTGGTGCCTGTTA
CCAAAGCTTGGAAAATAGACTTAAACATGGCTTTAATGGAGATATTTCAG
AAGTGAAGGTCTCCCTCAACAGTGTTTTGACGGCAGAGGACATTAAATGT
GGAACAACTTGTGCCGAGCATTTATTAGCTCCAAAGCCGCTGCAAAGTAA
CAATGAAAAATCGTATTCTGATAACAGCCAGATTAAAGAAAACATTGAAA
TGAACGAAATTTATATTTCGGCGAAAAACAAACATGATATTGAACAATTT
ATGCGAAAAGTTCAGTATATTAATACTAAACAAAAGCCCACGGTAGGACG
TCGAAACATAGAAGTGCTTACAACACTGAATTGTAAAAATGAAAGTTCCC
TTCGCTTACCGCCAATTGAGACTTATATCATGGTTAACGAACCGATAGCT
CCACTCGGGATCGATATTGATGTCGTCTCAGCGTCGCTGGAAACCTCCGA
TCTAACTCCGCCATCGTATTCCCCCAAAATAGCAATATCTGGAACTTCAA
ACAAGCTTGTATCATATCAAGAAATTAAATTGGGCGTACACATTTTGGAA
AAAACTTGCATTGACTCGGTATCTAAAAACAATGGAAAATTAGAAGAGAA
AAATCATATCGACTCATGCAGCGTCGTTGTATTTCCCTCTTTGAATCCCG
ATCATGAAGACATTAAAATAGATGGTGACGAGTCATTGTCATCTAGCATG
GACATTAAGACTAATATTAATAAGGATGGAGTCGAAATGATTGGAAAGGA
TACCATTAGCAATTATATAAATGTATTACGATCTCTTGTATACAGTAACA
AAAAACCTGCATATTATCTTAACCGTGTATTTAAGCTTTCTTGTGCCCAA
CAAAGTTCCCAGTACAAAAGCGGTGAATATACACTAACACTTACTGTGTT
GCATCCTAAACAGACATTGTTTAAGTCTACAAATGTACTCCCTTCATCGT
TATCTAAAGTAAACTTTATTGGCAACACCGATAATGAAACATCATTTCAC
CGGAATAGTGGTTCGGTAAATGGCAATGATAATAATCAGCCAACAGAGTC
TAAGGTATATTCATATTCCCTTCTGCATACCAATAATGTGCAAGAACCAA
AATCTCACATTCATTCTTTCATACACAAAGCTGAAGGGTCACATGTTACA
ATGCTTATAATTCTTGTAAGTGTTTTTTTGGCGGTCTTACTTTGTGGAGT
CTCGATTGCACGTTTAAAAAACAACCAAAAATATATTGAACACCATCAAC
CATGTCCAAAAATTTCTGATGATGGTTTAATTTGGGATGACTCAGCTTTG
ACTATAACTATAAATCCCATGCAAGCAGATGTTACATCGGACGCGAGTTC
TGAATCAGAAAATTCTGAATCTGAAGATGAAGAAGCTTTAAAGGACGGAT
TCACTCACATCAATCAACTCGAATGGGATAACTCTAATATTTTCCAACAG
TAAAAGCTTTCTAGACCAT

BS05171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cals-RD 2937 CG11059-PD 1..2937 17..2953 14685 100 Plus
Cals-RB 2937 CG11059-PB 1..2937 17..2953 14685 100 Plus
Cals-RA 2937 CG11059-PA 1..2937 17..2953 14685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cals-RD 6077 CG11059-RD 187..3125 16..2954 14695 100 Plus
Cals-RB 3872 CG11059-RB 187..3125 16..2954 14695 100 Plus
Cals-RA 3693 CG11059-RA 184..3122 16..2954 14695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1117968..1119019 1936..885 5260 100 Minus
4 1348131 4 1116660..1117215 2546..1991 2780 100 Minus
4 1348131 4 1120106..1120613 775..268 2525 99.8 Minus
4 1348131 4 1120659..1120803 274..130 725 100 Minus
4 1348131 4 1116326..1116458 2761..2629 665 100 Minus
4 1348131 4 1115956..1116079 2885..2762 620 100 Minus
4 1348131 4 1121459..1121574 131..16 580 100 Minus
4 1348131 4 1119937..1120048 886..775 560 100 Minus
4 1348131 4 1116515..1116600 2630..2545 430 100 Minus
4 1348131 4 1115826..1115896 2954..2884 355 100 Minus
4 1348131 4 1117850..1117906 1992..1936 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:41:44 has no hits.

BS05171.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:57 Download gff for BS05171.complete
Subject Subject Range Query Range Percent Splice Strand
cals-RB 180..3114 17..2951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:15 Download gff for BS05171.complete
Subject Subject Range Query Range Percent Splice Strand
Cals-RA 185..3119 17..2951 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:14 Download gff for BS05171.complete
Subject Subject Range Query Range Percent Splice Strand
Cals-RA 185..3119 17..2951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:14 Download gff for BS05171.complete
Subject Subject Range Query Range Percent Splice Strand
4 1115829..1115894 2886..2951 100 <- Minus
4 1115956..1116079 2762..2885 100 <- Minus
4 1116326..1116456 2631..2761 100 <- Minus
4 1116515..1116598 2547..2630 100 <- Minus
4 1116660..1117214 1992..2546 100 <- Minus
4 1117851..1117905 1937..1991 100 <- Minus
4 1117968..1119017 887..1936 100 <- Minus
4 1119937..1120047 776..886 100 <- Minus
4 1120106..1120606 275..775 100 <- Minus
4 1120659..1120801 132..274 100 <- Minus
4 1121459..1121573 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:15 Download gff for BS05171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1136455..1136520 2886..2951 100 <- Minus
arm_4 1136582..1136705 2762..2885 100 <- Minus
arm_4 1136952..1137082 2631..2761 100 <- Minus
arm_4 1137141..1137224 2547..2630 100 <- Minus
arm_4 1137286..1137840 1992..2546 100 <- Minus
arm_4 1138477..1138531 1937..1991 100 <- Minus
arm_4 1138594..1139643 887..1936 100 <- Minus
arm_4 1140563..1140673 776..886 100 <- Minus
arm_4 1142085..1142199 17..131 100   Minus
arm_4 1140732..1141232 275..775 100 <- Minus
arm_4 1141285..1141427 132..274 100 <- Minus

BS05171.pep Sequence

Translation from 16 to 2952

> BS05171.pep
MTFHKTFGYGCIVLICFELLFAGVETSSENDDEYLTQKEIILEKSYHGLI
RENETLVEITPLIKVNEEKICNFHILKKPYHEIPFKIELVNNLGILKARR
TLNCENRKSYHFEICAIYCDGTPSNTANVHITVIDVNEYAPTFLEPSYVI
EVDEGRLYNEILRVEASDKDCTPLFGDVCKYEILNNDEPFSIDNEGSIKN
TEPLSHKASHNHILSVVAYDCAMKESAPIMVSIKVRRVCETKFVGMPERI
DYTSGSTESLQLFPNARLDLCDISCKNEEDLRIHSSIALKTKHISFGCDR
DISNCTSGQKVKDLLPHGAEWTKELSYDEGLEPIFHFDGSTGVVVPATVI
DHYDFSSQPFSILTLFRHNSQVEINKHVKEHIVCSADDHKMNRHHMALFV
RNCRLIFLLRKNFNEGDLNIFSPAEWRWKIPEVCDNEWHHYVLNVEDSSK
VDLFIDGVRFENSIENRHSNPEVIDDWPLHAAHGVNTSLAIGACYQSLEN
RLKHGFNGDISEVKVSLNSVLTAEDIKCGTTCAEHLLAPKPLQSNNEKSY
SDNSQIKENIEMNEIYISAKNKHDIEQFMRKVQYINTKQKPTVGRRNIEV
LTTLNCKNESSLRLPPIETYIMVNEPIAPLGIDIDVVSASLETSDLTPPS
YSPKIAISGTSNKLVSYQEIKLGVHILEKTCIDSVSKNNGKLEEKNHIDS
CSVVVFPSLNPDHEDIKIDGDESLSSSMDIKTNINKDGVEMIGKDTISNY
INVLRSLVYSNKKPAYYLNRVFKLSCAQQSSQYKSGEYTLTLTVLHPKQT
LFKSTNVLPSSLSKVNFIGNTDNETSFHRNSGSVNGNDNNQPTESKVYSY
SLLHTNNVQEPKSHIHSFIHKAEGSHVTMLIILVSVFLAVLLCGVSIARL
KNNQKYIEHHQPCPKISDDGLIWDDSALTITINPMQADVTSDASSESENS
ESEDEEALKDGFTHINQLEWDNSNIFQQ*

BS05171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cals-PD 978 CG11059-PD 1..978 1..978 5148 100 Plus
Cals-PB 978 CG11059-PB 1..978 1..978 5148 100 Plus
Cals-PA 978 CG11059-PA 1..978 1..978 5148 100 Plus
Cals-PC 979 CG11059-PC 1..979 1..978 5136 99.9 Plus