Clone Sequence Records
BS05188.complete Sequence
4559 bp assembled on 2009-12-07
GenBank Submission: KX798169
> BS05188.complete
GAAGTTATCAGTCGACATGGACGCTCCAGATGTGGGACGCATTATAAGGG
CGCCGGCGAGGCGCAAACGGAACGATGAACAGTTAATGGATAGGATAAAA
CTCAAAAAGGTCCTGGGCCTCACCGTGTGCAGCAATGCGGCTCTGGATGT
GTCCCCAGTCAGCGGCCTGCTGGCCTATCCAGCTGGCTGCACCGTGGTGC
TCTTCAACGCAAAACGCCAGACACAGGCCTACCTGGTCAACACCTCCCGC
AAAGCATTCACATCCGTGGCGTTCTCCCGGTGTGGTCGCTACGTGGCCAC
CGGGGAGTGTGGCATCAATCCGGCCATCAAGGTCTGGGAGCTGGAGACTC
CGAACGGAAGTCTGGAGCACTGCAGCGGCGGCAGTGTTGTTGCAGAGTTT
GTGGACCACAAATACGCCGTCACTTGTGTGGCCTTTTCGCCCACTGGCAA
GTACCTGGTTTCGGTGGGCTCCCAGCACGACATGATTGTGAATGTGTTCG
ACTGGCGGGCCAACCTCAAGATGGCCTCGAATAAAATCAGCTCCAAGGTG
GCTGCCGTGTGCTTTTCCGAGGATGGCAGCTATTTTGTGACCGTGGGTAA
TCGCCACGTGAAATACTGGTATCTAGAGGGTGGCAGAAAGTACAAGGATC
CTATTCCCCTGATGGGTCGCAGCGCCATTCTGGGCGATTTGCGGGACAAC
GACTTTTGTGCGGTGGCGTGCGGCAAGGGGATCTGTGCGGAGAGCACGTA
CGCCATCACGCGGCAAGGACACTTGGTGGAGTTCAGCTCCCGCCGCCTGC
TCGACAAGTGGGTGCAGTGCCGCACCACCAATGCCAACTGTATCTGCGTG
AATGAGAGGTTCATTCTCGTGGGGTGTGCGGAGTCCATCATTCGCATCTT
CAATTCGGCCACGCTGGAATACGTGACCACTCTGCCTAGAACTCATTACT
TGGGCGTGGATGTGGCCCAGGGCATCCAGATCAACCACATCATGTCGGTG
CCACAGCAGGCCAAGTTCCCCGACTGCATTGCCATGGTGTTCGACGAACA
GCGTTCGAAGGTGAGTTGCGTTTACAACGATCACTCTCTTTACATCTGGG
ATCTGCGCGACATCTCACGAGTGGGCAAGTCGCACTCGTTCCTTTATCAC
TCCACTTGCATCTGGGGCGTGGAGACAGTGCCATATAACGTGGAGCGGGA
GCCATCGCAAACCCTTCCAGAGGAATGCTTCGTCACCTGCTCGTCGGACG
ACACGATCCGTGTCTGGGGTTTGGACGGATGCACCAACAACGATATCTAC
CGAAGGAACATCTACTCCAAGGAGCTGCTGAAGATCGTCTACAGCGACGA
TGAACTGCAGTTTATCAAGGATCAGGGCTCGTCTCTGTTCGACAAAGCTG
GAAACTCCTCCTACGATGGAAGGAATGGAGTGCGGTGCATCAAGATCAGT
CCGGAACTGCAGCACTTGGCAAGTGGAGATCGGTGCGGCAACATACGCGT
GTACAGTCTGGTCAATCTGCGCCTGCTCACCACCATCGAAGCCCATGAGT
CTGAGGTGCTTTGTTTGGAGTATTCCAACGAGAAGATCGAGCGAAAGTTG
TTGGCCAGTGCCAGTAGGGATCGGCTGATCCATGTGTTCGACGTGGCGCA
GAATTATCTACTGCTACAAACGCTGGACGATCACAGCTCCTCCATCACCT
CCATCAAGTTTGTAGGTGCAGGACTTAACTTCCAGATGATCAGTTGTGGC
GCCGACAAGTCCATTATGTTTAGGAGTTTTCAGGGAAATATTTTCATGAG
GGGCACCAACACCTCAGGAAAGACGACGTTGTACGACATGGAGGTGGACT
CGAATGCCAAGCACATTTTGACAGCCTGCCAGGATCGCAACGTGCGGGTT
TACGGAACCCAGAATGCCAAGCAAACAAAGACCTTCAAGGGCTCTCATTC
AGACGAAGGAAGTCTGATCAAACTCAGTCTCGATCCCAGTGGCATCTATG
TGGCCACTTCCTGCACGGATAAAACGCTTGCTGTTTATGATTACTACTCG
AACGAGTGCATGGCAAGGATGTACGGTCACAGCGAGTTGGTCACGGGACT
TAAGTTCACCAACGATTGCAGACATTTAATTTCCGCAAGTGGCGACGGTT
GCATTTTCATATGGCAAGTGCCACACGATATGATAGTGACCATGCAGGCC
AGGATGTCGCAACAGCGTCTCAGATCTGGGCATGCTCCATTGCCGCGACC
CTTGGCTCCTATTTCGCCACCGGATGGTATTGTCCTGGAATCGCCAACCA
GTGAAATAGAGCAGCCGCAATTGCAGCCCAAGTTTGGAGTGGCCGAAAGG
TTTTCCGATGTGGGTCAACTGCCTCAGTGGGCGATGCGAAAAGCAGCTGC
CGATTCGGATAGTGGGGCCTTATCCATACCCACGCCCAGTGGTGGATCTG
CGACTGTGCCTGGCATGCATGCTGCTTCATCGATGGGAAATCTAAGCTCA
TCGCCCAGTCAACAGATGACAGGACTGGCACCACGGGCCAGGGGAAGATG
GGCCCAAAGGAGCACTCAGTTGGAAACGGCCGATGACCTGCGTTCCAACT
CCGAAAGTCCTCTGGGAACCGTTTCGTCTGTAGGTGGTCACAGCGGTGTG
AATGTCCAGACTTCTGATTACAATAGTGCCTCTTCCAAGGACATTACGTA
CAATCAAACCTACTTGAGTGAGGACTCCTCCATCGATTCGGGAATGGAGA
CGCGAAGGGGCGAACTCAAGTTTATTGGCAGCAGCAACAATGGAACGGTG
GTCACTGTGTCCTCCGTTTCCTCGATTGCTGTTTCTGCCTCCAACGGTGC
CATGTCAACGGGTTCTGGAGCTGCCCAACAGCGTCTCCAGTTGCCGGATA
AACGGTTAAAGCCGGGTCTGCGATTCGATACCCATACCCATGATCACGAT
GGGGATGTGGAGGACATCTCCGATGGAGAGAGAACTAGCTCCGATCACGG
AATGTTTTACAACAACCTCGCGCCCAGCACGCCAACAGATTTCAAGGTGA
CGGCCATGAACGAGGATGAGCTGCGCAAATCGGTGCGCCGTCAGAAGTTT
GAAAAGTCCGGCCTTCAGCTTACCCCTTCGGCCCTCAGCGGAAACGGAAG
TTCGCATACTGCGAGCACCGGAACTGGGACCTCCGATACCGAAGACGAAG
GCTCCACGCCCAGTGCCGAAAATGCCGAACGGTCGCTGGCCTCGACGTTG
GGTGGCAGCTCGGAGAATCTGCCCCAGAGCAGCACCAACAGCTTCCTGCA
CGCCGCTTTGCCAGAGGGACCGGGACTAACAACGCCAATGGAAAGGGGTG
GCAGCAGTCGCCGCAGCATCAGCGCCAAGCACAATACGGAGAATGGGAAA
AGCGTGGCCGCGCCGCCCACCATCACCAAGTCGTATACAAGTACCAAAAA
GGAGGAGCTGTTGCAGGTCATCAACAAGGTCAAGCAGCAGCTGGAGAATG
TAGGCCATAGACCCCTCCGGGGAAGCCATAGCATATCGGACCTCAGTCTG
GCAGCCAACTTGGATGGATCAAGGAATGCGGGCGGAGGACCAGGACGTTA
CCAGAAGCCAGGCAATCCCAAAACGCTCAATCCCATGCCCATCGAGGAGT
CCTCCATACGCCGCGCTTGCTCGCTGAGCGACCTGCACATGGGCAACTTT
GGCAAGCCTGGAAAATCGCAGAATGGCACTCCACAGAAGCCGCAGGTCCA
GCACCGAAATGGAAACGTCTCGCGATCGGCCAGCAAAAGGAACAGTTTGC
AGGGCAAAACTGGGTTGGGTGCCTCCAGCAACTCAATGAATGTTCTCAAT
CAGGGCAGCGACTCGGAACCCGAGGATAGCAACCGCTTGCGCAGTGCCAG
CAACGGACAGGGACGCAGCAACGGACCCATTGCTGCGAATCGCCAGTACA
GCAACAAGATTAACAATGTCAACAACAATCGGCGAAAGACGCCAAACTTT
AGCAGTGCCACGCCCATGCAGGACGACTCCAGCTCCGAGGAGACGCCCAA
TAGCACTGTCAACAACAAACCCATTGTGCCACCAAGGCCTAGGAACCTGG
CATTTGATCACAAGAGCAAACTGATGATCAACAATAGTGGCAGCCCCGGC
GGAAATGCCAAACAGCGGAGCGGAGTGACTTCCACAGAGGATTTTGAGGG
CACAGATCCTGAAGCCCAAGTACACAATGTGATCAATAAACTTTATACAA
CCACACAGGCAGCTATGCAGCTGCATGCGAATCTAAAGAATACGCTACTG
CTGAAGGAACTGGAGAACGCCCTGATCATGTCCAGGAATATGCTAAGCAG
CATCACCAATCGACAAGCGGATAAGACGAACAACGGAGGTGGGGGATTAG
GAGTGGGTGGAAGTGGGGGATTGAACCACGATCAGCTGAACGCTGACAAC
GGAGACTATCTGATGATGGTCAACAACTGTGCCGATCTTTTGAGCAATTT
ACGCACGAAGCACAAACCCGATGACTGTGAGAATAACTCCTAGAAGCTTT
CTAGACCAT
BS05188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RE | 4527 | CG7337-PE | 1..4527 | 17..4543 | 22635 | 100 | Plus |
| CG7337-RA | 4527 | CG7337-PA | 1..4527 | 17..4543 | 22635 | 100 | Plus |
| CG7337-RB | 4515 | CG7337-PB | 66..4515 | 94..4543 | 22250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RE | 6049 | CG7337-RE | 1026..5553 | 16..4543 | 22640 | 100 | Plus |
| CG7337-RA | 6406 | CG7337-RA | 1026..5553 | 16..4543 | 22640 | 100 | Plus |
| CG7337-RB | 6246 | CG7337-RB | 823..5272 | 94..4543 | 22250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1935736..1936991 | 1781..3036 | 6280 | 100 | Plus |
| 2L | 23513712 | 2L | 1934959..1935684 | 1059..1784 | 3630 | 100 | Plus |
| 2L | 23513712 | 2L | 1934477..1934900 | 639..1062 | 2120 | 100 | Plus |
| 2L | 23513712 | 2L | 1937054..1937375 | 3037..3358 | 1610 | 100 | Plus |
| 2L | 23513712 | 2L | 1933805..1934050 | 186..431 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 1934118..1934328 | 430..640 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 1942250..1942451 | 4007..4208 | 1010 | 100 | Plus |
| 2L | 23513712 | 2L | 1942784..1942965 | 4362..4543 | 910 | 100 | Plus |
| 2L | 23513712 | 2L | 1942510..1942663 | 4209..4362 | 770 | 100 | Plus |
| 2L | 23513712 | 2L | 1941755..1941903 | 3708..3856 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 1937441..1937586 | 3357..3502 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 1938508..1938620 | 3500..3612 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 1941579..1941677 | 3609..3707 | 495 | 100 | Plus |
| 2L | 23513712 | 2L | 1932055..1932147 | 94..186 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 1910071..1910149 | 16..94 | 395 | 100 | Plus |
| 2L | 23513712 | 2L | 1941971..1942046 | 3857..3932 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 1942107..1942182 | 3932..4007 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:55:31 has no hits.
BS05188.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:12 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RE | 665..5191 | 17..4543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:26 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1027..5553 | 17..4543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:40 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RE | 665..5191 | 17..4543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:56 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1027..5553 | 17..4543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:56 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1941971..1942046 | 3857..3932 | 100 | -> | Plus |
| 2L | 1942108..1942182 | 3933..4007 | 100 | -> | Plus |
| 2L | 1942251..1942451 | 4008..4208 | 100 | -> | Plus |
| 2L | 1910072..1910149 | 17..94 | 100 | -> | Plus |
| 2L | 1932056..1932147 | 95..186 | 100 | -> | Plus |
| 2L | 1933806..1934049 | 187..430 | 100 | -> | Plus |
| 2L | 1934119..1934328 | 431..640 | 100 | -> | Plus |
| 2L | 1934479..1934898 | 641..1060 | 100 | -> | Plus |
| 2L | 1942510..1942663 | 4209..4362 | 100 | -> | Plus |
| 2L | 1942785..1942965 | 4363..4543 | 100 | | Plus |
| 2L | 1934961..1935683 | 1061..1783 | 100 | -> | Plus |
| 2L | 1935739..1936991 | 1784..3036 | 100 | -> | Plus |
| 2L | 1937054..1937373 | 3037..3356 | 100 | -> | Plus |
| 2L | 1937441..1937583 | 3357..3499 | 100 | -> | Plus |
| 2L | 1938508..1938619 | 3500..3611 | 100 | -> | Plus |
| 2L | 1941582..1941677 | 3612..3707 | 100 | -> | Plus |
| 2L | 1941755..1941903 | 3708..3856 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:26 Download gff for
BS05188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1942251..1942451 | 4008..4208 | 100 | -> | Plus |
| arm_2L | 1942510..1942663 | 4209..4362 | 100 | -> | Plus |
| arm_2L | 1910072..1910149 | 17..94 | 100 | -> | Plus |
| arm_2L | 1932056..1932147 | 95..186 | 100 | -> | Plus |
| arm_2L | 1933806..1934049 | 187..430 | 100 | -> | Plus |
| arm_2L | 1934119..1934328 | 431..640 | 100 | -> | Plus |
| arm_2L | 1934479..1934898 | 641..1060 | 100 | -> | Plus |
| arm_2L | 1934961..1935683 | 1061..1783 | 100 | -> | Plus |
| arm_2L | 1942785..1942965 | 4363..4543 | 100 | | Plus |
| arm_2L | 1935739..1936991 | 1784..3036 | 100 | -> | Plus |
| arm_2L | 1937054..1937373 | 3037..3356 | 100 | -> | Plus |
| arm_2L | 1937441..1937583 | 3357..3499 | 100 | -> | Plus |
| arm_2L | 1938508..1938619 | 3500..3611 | 100 | -> | Plus |
| arm_2L | 1941582..1941677 | 3612..3707 | 100 | -> | Plus |
| arm_2L | 1941755..1941903 | 3708..3856 | 100 | -> | Plus |
| arm_2L | 1941971..1942046 | 3857..3932 | 100 | -> | Plus |
| arm_2L | 1942108..1942182 | 3933..4007 | 100 | -> | Plus |
BS05188.3prime Sequence
851 bp (819 high quality bases) assembled on 2005-12-02
> BS05188.3prime
ATGGTCTAGAAAGCTTCTAGGAGTTATTCTCACAGTCATCGGGTTTGTGC
TTCGTGCGTAAATTGCTCAAAAGATCGGCACAGTTGTTGACCATCATCAG
ATAGTCTCCGTTGTCAGCGTTCAGCTGATCGTGGTTCAATCCCCCACTTC
CACCCACTCCTAATCCCCCACCTCCGTTGTTCGTCTTATCCGCTTGTCGA
TTGGTGATGCTGCTTAGCATATTCCTGGACATGATCAGGGCGTTCTCCAG
TTCCTTCAGCAGTAGCGTATTCTTTAGATTCGCATGCAGCTGCATAGCTG
CCTGTGTGGTTGTATAAAGTTTATTGATCACATTGTGTACTTGGGCTTCA
GGATCTGTGCCCTCAAAATCCTCTGTGGAAGTCACTCCGCTCCGCTGTTT
GGCATTTCCGCCGGGGCTGCCACTATTGTTGATCATCAGTTTGCTCTTGT
GATCAAATGCCAGGTTCCTAGGCCTTGGTGGCACAATGGGTTTGTTGTTG
ACAGTGCTATTGGGCGTCTCCTCGGAGCTGGAGTCGTCCTGCATGGGCGT
GGCACTGCTAAAGTTTGGCGTCTTTCGCCGATTGTTGTTGACATTGTTAA
TCTTGTTGCTGTACTGGCGATTCGCAGCAATGGGTCCGTTGCTGCGTCCC
TGTCCGTTGCTGGCACTGCGCAAGCGGTTGCTATCCTCGGGTTCCGAGTC
GCTGCCCTGATTGAGAACATTCATTGAGTTGCTGGAGGCACCCAACCCAG
TTTTGCCCTGCAAACTGTTCCTTTTGCTGGCCGATCGCGAGACGTTTCCA
TTTCGGTGCTGGACCTGCGGCTTCTGTGGAGTGCCATTCTGCGATTTTCC
A
BS05188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-PA | 4527 | CG7337-RA | 3693..4527 | 851..17 | 4175 | 100 | Minus |
| CG7337-PB | 4515 | CG7337-RB | 3681..4515 | 851..17 | 4175 | 100 | Minus |
| CG7337-PC | 7044 | CG7337-RC | 6210..7044 | 851..17 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RH | 5953 | CG7337-RH | 4623..5457 | 851..17 | 4175 | 100 | Minus |
| CG7337-RG | 8459 | CG7337-RG | 6772..7606 | 851..17 | 4175 | 100 | Minus |
| CG7337-RF | 5930 | CG7337-RF | 4243..5077 | 851..17 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1942250..1942451 | 553..352 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 1942784..1942965 | 198..17 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 1942510..1942663 | 351..198 | 770 | 100 | Minus |
| 2L | 23513712 | 2L | 1941756..1941903 | 851..704 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 1941971..1942046 | 703..628 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 1942107..1942182 | 628..553 | 380 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2629..2812 | 610..427 | 109 | 56.3 | Minus |
BS05188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:11 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-PA | 3694..4527 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:33 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-PC | 6211..7044 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:57 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RF | 4244..5077 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:13 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RF | 4244..5077 | 17..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:13 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1941757..1941903 | 704..850 | 100 | -> | Minus |
| 2L | 1941971..1942046 | 628..703 | 100 | -> | Minus |
| 2L | 1942108..1942182 | 553..627 | 100 | -> | Minus |
| 2L | 1942251..1942451 | 352..552 | 100 | -> | Minus |
| 2L | 1942510..1942663 | 198..351 | 100 | -> | Minus |
| 2L | 1942785..1942965 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:57 Download gff for
BS05188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1941757..1941903 | 704..850 | 100 | -> | Minus |
| arm_2L | 1941971..1942046 | 628..703 | 100 | -> | Minus |
| arm_2L | 1942108..1942182 | 553..627 | 100 | -> | Minus |
| arm_2L | 1942251..1942451 | 352..552 | 100 | -> | Minus |
| arm_2L | 1942510..1942663 | 198..351 | 100 | -> | Minus |
| arm_2L | 1942785..1942965 | 17..197 | 100 | | Minus |
BS05188.5prime Sequence
821 bp (763 high quality bases) assembled on 2005-12-02
> BS05188.5prime
GAAGTTATCAGTCGACATGGACGCTCCAGATGTGGGACGCATTATAAGGG
CGCCGGCGAGGCGCAAACGGAACGATGAACAGTTAATGGATAGGATAAAA
CTCAAAAAGGTCCTGGGCCTCACCGTGTGCAGCAATGCGGCTCTGGATGT
GTCCCCAGTCAGCGGCCTGCTGGCCTATCCAGCTGGCTGCACCGTGGTGC
TCTTCAACGCAAAACGCCAGACACAGGCCTACCTGGTCAACACCTCCCGC
AAAGCATTCACATCCGTGGCGTTCTCCCGGTGTGGTCGCTACGTGGCCAC
CGGGGAGTGTGGCATCAATCCGGCCATCAAGGTCTGGGAGCTGGAGACTC
CGAACGGAAGTCTGGAGCACTGCAGCGGCGGCAGTGTTGTTGCAGAGTTT
GTGGACCACAAATACGCCGTCACTTGTGTGGCCTTTTCGCCCACTGGCAA
GTACCTGGTTTCGGTGGGCTCCCAGCACGACATGATTGTGAATGTGTTCG
ACTGGCGGGCCAACCTCAAGATGGCCTCGAATAAAATCAGCTCCAAGGTG
GCTGCCGTGTGCTTTTCCGAGGATGGCAGCTATTTTGTGACCGTGGGTAA
TCGCCACGTGAAATACTGGTATCTAGAGGGTGGCAGAAAGTACAAGGATC
CTATTCCCCTGATGGGTCGCAGCGCCATTCTGGGCGATTTGCGGGACAAC
GACTTTTGTGCGGTGGCGTGCGGCAAGGGGATCTGTGCGGAGAGCACGTA
CGCCATCACGCGGCAAGGACACTTGGTGGAGTTCAGCTCCCGCCGCCTGC
TCGACAAGTGGGTGCAGTGCC
BS05188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-PA | 4527 | CG7337-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
| CG7337-PB | 4515 | CG7337-RB | 66..793 | 94..821 | 3640 | 100 | Plus |
| CG7337-PC | 7044 | CG7337-RC | 66..793 | 94..821 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-RH | 5953 | CG7337-RH | 1026..1831 | 16..821 | 4030 | 100 | Plus |
| CG7337-RE | 6049 | CG7337-RE | 1026..1831 | 16..821 | 4030 | 100 | Plus |
| CG7337-RA | 6406 | CG7337-RA | 1026..1831 | 16..821 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1933805..1934050 | 186..431 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 1934118..1934328 | 430..640 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 1934477..1934659 | 639..821 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 1932055..1932147 | 94..186 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 1910071..1910149 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:11:23 has no hits.
BS05188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:12 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:34 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:17 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1022..1831 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:37 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7337-RA | 1022..1831 | 9..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:37 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1934479..1934659 | 641..821 | 100 | | Plus |
| 2L | 1910064..1910149 | 9..94 | 96 | -> | Plus |
| 2L | 1932056..1932147 | 95..186 | 100 | -> | Plus |
| 2L | 1933806..1934049 | 187..430 | 100 | -> | Plus |
| 2L | 1934119..1934328 | 431..640 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:17 Download gff for
BS05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1910064..1910149 | 9..94 | 96 | -> | Plus |
| arm_2L | 1932056..1932147 | 95..186 | 100 | -> | Plus |
| arm_2L | 1933806..1934049 | 187..430 | 100 | -> | Plus |
| arm_2L | 1934119..1934328 | 431..640 | 100 | -> | Plus |
| arm_2L | 1934479..1934659 | 641..821 | 100 | | Plus |
BS05188.pep Sequence
Translation from 16 to 4542
> BS05188.pep
MDAPDVGRIIRAPARRKRNDEQLMDRIKLKKVLGLTVCSNAALDVSPVSG
LLAYPAGCTVVLFNAKRQTQAYLVNTSRKAFTSVAFSRCGRYVATGECGI
NPAIKVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSV
GSQHDMIVNVFDWRANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKY
WYLEGGRKYKDPIPLMGRSAILGDLRDNDFCAVACGKGICAESTYAITRQ
GHLVEFSSRRLLDKWVQCRTTNANCICVNERFILVGCAESIIRIFNSATL
EYVTTLPRTHYLGVDVAQGIQINHIMSVPQQAKFPDCIAMVFDEQRSKVS
CVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREPSQTL
PEECFVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQFI
KDQGSSLFDKAGNSSYDGRNGVRCIKISPELQHLASGDRCGNIRVYSLVN
LRLLTTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLL
QTLDDHSSSITSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTS
GKTTLYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSHSDEGSL
IKLSLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTND
CRHLISASGDGCIFIWQVPHDMIVTMQARMSQQRLRSGHAPLPRPLAPIS
PPDGIVLESPTSEIEQPQLQPKFGVAERFSDVGQLPQWAMRKAAADSDSG
ALSIPTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRST
QLETADDLRSNSESPLGTVSSVGGHSGVNVQTSDYNSASSKDITYNQTYL
SEDSSIDSGMETRRGELKFIGSSNNGTVVTVSSVSSIAVSASNGAMSTGS
GAAQQRLQLPDKRLKPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNN
LAPSTPTDFKVTAMNEDELRKSVRRQKFEKSGLQLTPSALSGNGSSHTAS
TGTGTSDTEDEGSTPSAENAERSLASTLGGSSENLPQSSTNSFLHAALPE
GPGLTTPMERGGSSRRSISAKHNTENGKSVAAPPTITKSYTSTKKEELLQ
VINKVKQQLENVGHRPLRGSHSISDLSLAANLDGSRNAGGGPGRYQKPGN
PKTLNPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQKPQVQHRNGN
VSRSASKRNSLQGKTGLGASSNSMNVLNQGSDSEPEDSNRLRSASNGQGR
SNGPIAANRQYSNKINNVNNNRRKTPNFSSATPMQDDSSSEETPNSTVNN
KPIVPPRPRNLAFDHKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEA
QVHNVINKLYTTTQAAMQLHANLKNTLLLKELENALIMSRNMLSSITNRQ
ADKTNNGGGGLGVGGSGGLNHDQLNADNGDYLMMVNNCADLLSNLRTKHK
PDDCENNS*
BS05188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7337-PE | 1508 | CG7337-PE | 1..1508 | 1..1508 | 7846 | 100 | Plus |
| CG7337-PA | 1508 | CG7337-PA | 1..1508 | 1..1508 | 7846 | 100 | Plus |
| CG7337-PD | 1539 | CG7337-PD | 56..1539 | 25..1508 | 7717 | 99.9 | Plus |
| CG7337-PB | 1504 | CG7337-PB | 23..1504 | 27..1508 | 7713 | 100 | Plus |
| CG7337-PF | 1554 | CG7337-PF | 56..1554 | 25..1508 | 7691 | 98.9 | Plus |
