Clone Sequence Records
BS05196.3prime Sequence
904 bp (786 high quality bases) assembled on 2005-12-02
> BS05196.3prime
ATGGTCTAGAAAGCTTTCAGTGGGCCATGGTTGTGTGTTGGATGACGGAG
GCGCAGTTCCTCAAGTTGGTCAGAGCTGCGGCAGCAATGCTTTCCTCCTC
CGTGAGACCATGTTCCACAATCTGAAGCCGTCCGTATCCCGCAGATGAGG
CGGAGGAGCTGGAGTCCGAGAGGTAGTCGTTGTCATAGTCGTAGTTCTCC
CTGGCATTCGATCCCACCACGTAGACTCCCTCATCGGAGTGCGAACTGCT
GGCGGAGGAGGAGGTGGACACCGCCTGGTTAAAGTGAAAACTGCCTGTGA
TAGTTGTGGTGGTGGGCTTCATTTCCAACTGTTTTTCCGCTGGCTTTTCC
TTTTTCTGATGGGTCAGCTGGTGCTTCCTCAGGTAGGCGGCTCTCTTAAA
CTTCTTGCCGCACTCCTGGCAATCGAAGGCCAGTTCCTCCTCCGACTTTT
TCTCCACCTGCTGCTGTTTCTCCGGCTGGTTGGTGGTATTGCGATTCTCC
TTTTTAGACGCCTCCTTCCTCGGCTTGTGCCACCGGCGATGGGAGGCCAA
GTTAGCAGGACAATTGAACTGCTTGCCGCACTCGGGACACCGGTACTCCA
GCAGGACGATGCAGGCGCACCTGTGCCGGGCCAGGCCGAAGGCGTCCTCG
AACTTGATCTTGCACAGTCGGCAGACATAGTCCCCGATCACGTTCTTGAT
GGCGGCCAGTTCCGCCTTGGTCTCCTCCGTGATCTCGACTATGTTGTACT
TGGGGTCAATGTCGCCGTTGCTGTACTGCATCGATCCATCGGTGATGTCC
TCGAGCGGTCGGATGACGGTGCCCGAGACGGGGGAACTGGTCTCCTCATC
GAACTTCAGCTTGCGGGTGGCTTTATTGCGGGAGGGCTTCCCGAGGAAGT
GGAG
BS05196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13906-PA | 1410 | nerfin-1-RA | 538..1410 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 3208 | CG13906-RA | 708..1598 | 904..15 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 909819..910709 | 904..15 | 4405 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:29:30 has no hits.
BS05196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:15 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 522..1410 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:38 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 522..1410 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:49:41 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 708..1598 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:18 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 708..1598 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:18 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 909819..910709 | 15..904 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:49:41 Download gff for
BS05196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 909819..910709 | 15..904 | 99 | | Minus |
BS05196.5prime Sequence
894 bp (767 high quality bases) assembled on 2005-11-29
> BS05196.5prime
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACG
CCTTCGGCCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTAC
CGGTGTCCCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTT
BS05196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13906-PA | 1410 | nerfin-1-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 3208 | CG13906-RA | 186..1064 | 16..894 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 909297..910175 | 16..894 | 4395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:08 has no hits.
BS05196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:16 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:40 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:34 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 178..1064 | 7..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:51 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 178..1064 | 7..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:51 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 909289..910175 | 7..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:34 Download gff for
BS05196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 909289..910175 | 7..894 | 99 | | Plus |
BS05196.complete Sequence
1442 bp (1442 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635065
> BS05196.complete
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACG
CCTTCGGCCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTAC
CGGTGTCCCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTTGGCCTC
CCATCGCCGGTGGCACAAGCCGAGGAAGGAGGCGTCTAAAAAGGAGAATC
GCAATACCACCAACCAGCCGGAGAAACAGCAGCAGGTGGAGAAAAAGTCG
GAGGAGGAACTGGCCTTCGATTGCCAGGAGTGCGGCAAGAAGTTTAAGAG
AGCCGCCTACCTGAGGAAGCACCAGCTGACCCATCAGAAAAAGGAAAAGC
CAGCGGAAAAACAGTTGGAAATGAAGCCCACCACCACAACTATCACAGGC
AGTTTTCACTTTAACCAGGCGGTGTCCACCTCCTCCTCCGCCAGCAGTTC
GCACTCCGATGAGGGAGTCTACGTGGTGGGATCGAATGCCAGGGAGAACT
ACGACTATGACAACGACTACCTCTCGGACTCCAGCTCCTCCGCCTCATCT
GCGGGATACGGACGGCTTCAGATTGTGGAACATGGTCTCACGGAGGAGGA
AAGCATTGCTGCCGCAGCTCTGACCAACTTGAGGAACTGCGCCTCCGTCA
TCCAACACACAACCATGGCCCACTGAAAGCTTTCTAGACCAT
BS05196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 1410 | CG13906-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 3208 | CG13906-RA | 186..1598 | 16..1428 | 7065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 909297..910709 | 16..1428 | 7065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:32 has no hits.
BS05196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:37 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 1..1410 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:51 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 151..1571 | 7..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:42 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 187..1595 | 17..1425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:37 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 151..1571 | 7..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:34 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 187..1595 | 17..1425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:34 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 909298..910706 | 17..1425 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:42 Download gff for
BS05196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 909298..910706 | 17..1425 | 100 | | Plus |
BS05196.pep Sequence
Translation from 16 to 1425
> BS05196.pep
MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP
KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS
SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP
VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV
SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY
VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH
KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR
KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG
VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA
ALTNLRNCASVIQHTTMAH*
BS05196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-PA | 469 | CG13906-PA | 1..469 | 1..469 | 2434 | 100 | Plus |
nerfin-2-PA | 695 | CG12809-PA | 334..567 | 90..357 | 482 | 39.3 | Plus |
nerfin-2-PB | 775 | CG12809-PB | 334..567 | 90..357 | 482 | 39.3 | Plus |