Clone BS05196 Report

Search the DGRC for BS05196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptnerfin-1-RA
Protein status:BS05196.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05196.3prime Sequence

904 bp (786 high quality bases) assembled on 2005-12-02

> BS05196.3prime
ATGGTCTAGAAAGCTTTCAGTGGGCCATGGTTGTGTGTTGGATGACGGAG
GCGCAGTTCCTCAAGTTGGTCAGAGCTGCGGCAGCAATGCTTTCCTCCTC
CGTGAGACCATGTTCCACAATCTGAAGCCGTCCGTATCCCGCAGATGAGG
CGGAGGAGCTGGAGTCCGAGAGGTAGTCGTTGTCATAGTCGTAGTTCTCC
CTGGCATTCGATCCCACCACGTAGACTCCCTCATCGGAGTGCGAACTGCT
GGCGGAGGAGGAGGTGGACACCGCCTGGTTAAAGTGAAAACTGCCTGTGA
TAGTTGTGGTGGTGGGCTTCATTTCCAACTGTTTTTCCGCTGGCTTTTCC
TTTTTCTGATGGGTCAGCTGGTGCTTCCTCAGGTAGGCGGCTCTCTTAAA
CTTCTTGCCGCACTCCTGGCAATCGAAGGCCAGTTCCTCCTCCGACTTTT
TCTCCACCTGCTGCTGTTTCTCCGGCTGGTTGGTGGTATTGCGATTCTCC
TTTTTAGACGCCTCCTTCCTCGGCTTGTGCCACCGGCGATGGGAGGCCAA
GTTAGCAGGACAATTGAACTGCTTGCCGCACTCGGGACACCGGTACTCCA
GCAGGACGATGCAGGCGCACCTGTGCCGGGCCAGGCCGAAGGCGTCCTCG
AACTTGATCTTGCACAGTCGGCAGACATAGTCCCCGATCACGTTCTTGAT
GGCGGCCAGTTCCGCCTTGGTCTCCTCCGTGATCTCGACTATGTTGTACT
TGGGGTCAATGTCGCCGTTGCTGTACTGCATCGATCCATCGGTGATGTCC
TCGAGCGGTCGGATGACGGTGCCCGAGACGGGGGAACTGGTCTCCTCATC
GAACTTCAGCTTGCGGGTGGCTTTATTGCGGGAGGGCTTCCCGAGGAAGT
GGAG

BS05196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13906-PA 1410 nerfin-1-RA 538..1410 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3208 CG13906-RA 708..1598 904..15 4430 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909819..910709 904..15 4405 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:29:30 has no hits.

BS05196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:15 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 522..1410 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:38 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 522..1410 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:49:41 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 708..1598 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:18 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 708..1598 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:18 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 909819..910709 15..904 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:49:41 Download gff for BS05196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909819..910709 15..904 99   Minus

BS05196.5prime Sequence

894 bp (767 high quality bases) assembled on 2005-11-29

> BS05196.5prime
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACG
CCTTCGGCCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTAC
CGGTGTCCCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTT

BS05196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13906-PA 1410 nerfin-1-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3208 CG13906-RA 186..1064 16..894 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909297..910175 16..894 4395 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:08 has no hits.

BS05196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:16 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:40 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:34 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 178..1064 7..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:51 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 178..1064 7..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:51 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 909289..910175 7..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:34 Download gff for BS05196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909289..910175 7..894 99   Plus

BS05196.complete Sequence

1442 bp (1442 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635065

> BS05196.complete
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACG
CCTTCGGCCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTAC
CGGTGTCCCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTTGGCCTC
CCATCGCCGGTGGCACAAGCCGAGGAAGGAGGCGTCTAAAAAGGAGAATC
GCAATACCACCAACCAGCCGGAGAAACAGCAGCAGGTGGAGAAAAAGTCG
GAGGAGGAACTGGCCTTCGATTGCCAGGAGTGCGGCAAGAAGTTTAAGAG
AGCCGCCTACCTGAGGAAGCACCAGCTGACCCATCAGAAAAAGGAAAAGC
CAGCGGAAAAACAGTTGGAAATGAAGCCCACCACCACAACTATCACAGGC
AGTTTTCACTTTAACCAGGCGGTGTCCACCTCCTCCTCCGCCAGCAGTTC
GCACTCCGATGAGGGAGTCTACGTGGTGGGATCGAATGCCAGGGAGAACT
ACGACTATGACAACGACTACCTCTCGGACTCCAGCTCCTCCGCCTCATCT
GCGGGATACGGACGGCTTCAGATTGTGGAACATGGTCTCACGGAGGAGGA
AAGCATTGCTGCCGCAGCTCTGACCAACTTGAGGAACTGCGCCTCCGTCA
TCCAACACACAACCATGGCCCACTGAAAGCTTTCTAGACCAT

BS05196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 1410 CG13906-PA 1..1410 17..1426 7050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3208 CG13906-RA 186..1598 16..1428 7065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909297..910709 16..1428 7065 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:32 has no hits.

BS05196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:37 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 17..1426 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:51 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 151..1571 7..1428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:42 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 187..1595 17..1425 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:37 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 151..1571 7..1428 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:34 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 187..1595 17..1425 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:34 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 909298..910706 17..1425 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:42 Download gff for BS05196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909298..910706 17..1425 100   Plus

BS05196.pep Sequence

Translation from 16 to 1425

> BS05196.pep
MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP
KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS
SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP
VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV
SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY
VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH
KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR
KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG
VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA
ALTNLRNCASVIQHTTMAH*

BS05196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-PA 469 CG13906-PA 1..469 1..469 2434 100 Plus
nerfin-2-PA 695 CG12809-PA 334..567 90..357 482 39.3 Plus
nerfin-2-PB 775 CG12809-PB 334..567 90..357 482 39.3 Plus