Clone Sequence Records
BS05201.3prime Sequence
950 bp (863 high quality bases) assembled on 2005-12-02
> BS05201.3prime
ATGGTCTAGAAAGCTTTCAGAAATTAAATAGACGCCCTATCAGGGCATTA
AACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTT
GAGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGG
TTTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTC
CGGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACA
ACGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCAC
CGTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCAC
ACCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGT
GGTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCG
ACTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACA
TTCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGG
CGCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATC
CCAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGC
GCCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCA
GAACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGG
TGCCATTTAAATAACATCTGCCATGCTGACAGGCAATCGGACAGGTGTGA
ATACAGGCACCATGTTCGTTACGGACAAACTCTGCGAAGCACTCGCAAAC
GCCAGGACTGCGACAGAAGCCATTACGGCAGTTGTCTGGCGAAGATGCGG
AGCAGTCCGGCACACATTCATTGGCATACGGATCGCGACGGTAGCCTGCA
BS05201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 276..1209 | 950..17 | 4670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1286 | CG33119-RA | 317..1250 | 950..17 | 4670 | 100 | Minus |
NimB1-RB | 1289 | CG33119-RB | 317..1253 | 950..17 | 4630 | 99.7 | Minus |
NimB2-RA | 1435 | CG31839-RA | 1395..1435 | 17..57 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963983..13964457 | 950..476 | 2375 | 100 | Minus |
2L | 23513712 | 2L | 13964795..13965052 | 274..17 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 13964535..13964738 | 476..273 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 13968941..13969023 | 521..603 | 205 | 83.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:26:44 has no hits.
BS05201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:17 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 277..1209 | 17..949 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:41 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 277..1209 | 17..949 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:04:53 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 318..1250 | 17..949 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:18 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 318..1250 | 17..949 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:18 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963984..13964456 | 477..949 | 100 | -> | Minus |
2L | 13964535..13964738 | 273..476 | 100 | -> | Minus |
2L | 13964797..13965052 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:04:53 Download gff for
BS05201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963984..13964456 | 477..949 | 100 | -> | Minus |
arm_2L | 13964535..13964738 | 273..476 | 100 | -> | Minus |
arm_2L | 13964797..13965052 | 17..272 | 100 | | Minus |
BS05201.5prime Sequence
865 bp (861 high quality bases) assembled on 2005-12-02
> BS05201.5prime
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGC
BS05201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RB | 1289 | CG33119-RB | 42..890 | 17..865 | 4245 | 100 | Plus |
NimB1-RA | 1286 | CG33119-RA | 42..890 | 17..865 | 4245 | 100 | Plus |
NimB4-RA | 1478 | CG33115-RA | 796..878 | 639..721 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963899..13964457 | 208..766 | 2795 | 100 | Plus |
2L | 23513712 | 2L | 13963548..13963738 | 17..207 | 955 | 100 | Plus |
2L | 23513712 | 2L | 13964535..13964634 | 766..865 | 500 | 100 | Plus |
2L | 23513712 | 2L | 13968941..13969023 | 721..639 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:10:06 has no hits.
BS05201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:18 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:43 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:46:18 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 35..890 | 10..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:12 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 35..890 | 10..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:12 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963541..13963738 | 10..207 | 98 | -> | Plus |
2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
2L | 13964535..13964634 | 766..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:46:18 Download gff for
BS05201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963541..13963738 | 10..207 | 98 | -> | Plus |
arm_2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
arm_2L | 13964535..13964634 | 766..865 | 100 | | Plus |
BS05201.complete Sequence
1241 bp (1241 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635066
> BS05201.complete
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGT
GTCGGCCAAAGTGTGAGAGATTCTGCGGCAAATACGGGCGTTGTGTGGCT
CCCGAAATCTGCGGCTGTGGTGAGGGTCAACAGCATTGCCGGAACGGAAG
CTGTGACGATATCGAGCACTGCAGTTGCCCATCGGGGGAAACCCACTTCA
TCGATCGCTGTTTGAAGGCGGACCGCCTCAGTCAGCATCTCAACACTAGC
GAAAAGAGAAAGCACTTCAATCGCCAACTTGCTTATGAGTTTAATGCCCT
GATAGGGCGTCTATTTAATTTCTGAAAGCTTTCTAGACCAT
BS05201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1209 | CG33119-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
NimB1-RB | 1212 | CG33119-PB | 1..1212 | 17..1225 | 5980 | 99.8 | Plus |
NimB4-RA | 1347 | CG33115-PA | 728..810 | 639..721 | 205 | 83.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1286 | CG33119-RA | 42..1250 | 17..1225 | 6045 | 100 | Plus |
NimB1-RB | 1289 | CG33119-RB | 42..1253 | 17..1225 | 5980 | 99.8 | Plus |
NimB2-RA | 1435 | CG31839-RA | 1395..1435 | 1225..1185 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963899..13964457 | 208..766 | 2795 | 100 | Plus |
2L | 23513712 | 2L | 13964795..13965052 | 968..1225 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 13964535..13964738 | 766..969 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 13963548..13963738 | 17..207 | 955 | 100 | Plus |
2L | 23513712 | 2L | 13968941..13969023 | 721..639 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:17:59 has no hits.
BS05201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:13 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-RA | 1..1209 | 17..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:17 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nimB1-RA | 3..1211 | 17..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:21 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 42..1249 | 17..1224 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:13 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-RA | 3..1211 | 17..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:14 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 42..1249 | 17..1224 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:14 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963548..13963738 | 17..207 | 100 | -> | Plus |
2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
2L | 13964535..13964738 | 766..969 | 100 | -> | Plus |
2L | 13964797..13965051 | 970..1224 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:21 Download gff for
BS05201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963548..13963738 | 17..207 | 100 | -> | Plus |
arm_2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
arm_2L | 13964535..13964738 | 766..969 | 100 | -> | Plus |
arm_2L | 13964797..13965051 | 970..1224 | 100 | | Plus |
BS05201.pep Sequence
Translation from 16 to 1224
> BS05201.pep
MHCSGPLAGLTALLTLVAFPVQIKTDSTVSTELYGDIENTEYGDFESLSQ
TRERQQHLCHREVPSVFFQTERDSPVRGNGSTIYFHRIEVCCAGYRRDPY
ANECVPDCSASSPDNCRNGFCRSPGVCECFAEFVRNEHGACIHTCPIACQ
HGRCYLNGTCVCHQNFVLDQETRQFCRPKCSQSCGTHEECVAPGQCDCSP
GYRRTPDLGCQPVCAPDCGFGKCVAPNQCECFAGFIKRPNWNVCEAECYL
NCENGLCESRYKCHCREGYRYDVNTTSCLPECSDNCGQGNGVCIAPGVCR
CFRGYEVHGAECRPKCERFCGKYGRCVAPEICGCGEGQQHCRNGSCDDIE
HCSCPSGETHFIDRCLKADRLSQHLNTSEKRKHFNRQLAYEFNALIGRLF
NF*
BS05201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-PA | 402 | CG33119-PA | 1..402 | 1..402 | 2337 | 100 | Plus |
NimB1-PB | 403 | CG33119-PB | 1..403 | 1..402 | 2325 | 99.8 | Plus |
NimB4-PA | 448 | CG33115-PA | 92..438 | 59..401 | 972 | 48.3 | Plus |
NimB2-PA | 421 | CG31839-PA | 134..406 | 58..337 | 568 | 40 | Plus |
NimB5-PC | 315 | CG16873-PC | 92..314 | 53..280 | 516 | 44.2 | Plus |
NimB2-PA | 421 | CG31839-PA | 167..337 | 198..357 | 318 | 36.9 | Plus |
NimB2-PA | 421 | CG31839-PA | 270..409 | 91..237 | 255 | 39.6 | Plus |
NimB2-PA | 421 | CG31839-PA | 167..313 | 231..365 | 208 | 32.7 | Plus |
NimB2-PA | 421 | CG31839-PA | 302..421 | 91..213 | 199 | 35.4 | Plus |