Clone BS05201 Report

Search the DGRC for BS05201

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptNimB1-RA
Protein status:BS05201.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05201.3prime Sequence

950 bp (863 high quality bases) assembled on 2005-12-02

> BS05201.3prime
ATGGTCTAGAAAGCTTTCAGAAATTAAATAGACGCCCTATCAGGGCATTA
AACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTT
GAGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGG
TTTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTC
CGGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACA
ACGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCAC
CGTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCAC
ACCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGT
GGTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCG
ACTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACA
TTCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGG
CGCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATC
CCAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGC
GCCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCA
GAACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGG
TGCCATTTAAATAACATCTGCCATGCTGACAGGCAATCGGACAGGTGTGA
ATACAGGCACCATGTTCGTTACGGACAAACTCTGCGAAGCACTCGCAAAC
GCCAGGACTGCGACAGAAGCCATTACGGCAGTTGTCTGGCGAAGATGCGG
AGCAGTCCGGCACACATTCATTGGCATACGGATCGCGACGGTAGCCTGCA

BS05201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 276..1209 950..17 4670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1286 CG33119-RA 317..1250 950..17 4670 100 Minus
NimB1-RB 1289 CG33119-RB 317..1253 950..17 4630 99.7 Minus
NimB2-RA 1435 CG31839-RA 1395..1435 17..57 205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963983..13964457 950..476 2375 100 Minus
2L 23513712 2L 13964795..13965052 274..17 1290 100 Minus
2L 23513712 2L 13964535..13964738 476..273 1020 100 Minus
2L 23513712 2L 13968941..13969023 521..603 205 83.1 Plus
Blast to na_te.dros performed on 2015-02-09 02:26:44 has no hits.

BS05201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:17 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 277..1209 17..949 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:41 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 277..1209 17..949 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:04:53 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 318..1250 17..949 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:18 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 318..1250 17..949 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:18 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13963984..13964456 477..949 100 -> Minus
2L 13964535..13964738 273..476 100 -> Minus
2L 13964797..13965052 17..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:04:53 Download gff for BS05201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963984..13964456 477..949 100 -> Minus
arm_2L 13964535..13964738 273..476 100 -> Minus
arm_2L 13964797..13965052 17..272 100   Minus

BS05201.5prime Sequence

865 bp (861 high quality bases) assembled on 2005-12-02

> BS05201.5prime
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGC

BS05201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RB 1289 CG33119-RB 42..890 17..865 4245 100 Plus
NimB1-RA 1286 CG33119-RA 42..890 17..865 4245 100 Plus
NimB4-RA 1478 CG33115-RA 796..878 639..721 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963899..13964457 208..766 2795 100 Plus
2L 23513712 2L 13963548..13963738 17..207 955 100 Plus
2L 23513712 2L 13964535..13964634 766..865 500 100 Plus
2L 23513712 2L 13968941..13969023 721..639 205 83.1 Minus
Blast to na_te.dros performed on 2015-02-02 12:10:06 has no hits.

BS05201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:18 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:43 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:46:18 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 35..890 10..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:12 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 35..890 10..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:12 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13963541..13963738 10..207 98 -> Plus
2L 13963899..13964456 208..765 100 -> Plus
2L 13964535..13964634 766..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:46:18 Download gff for BS05201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963541..13963738 10..207 98 -> Plus
arm_2L 13963899..13964456 208..765 100 -> Plus
arm_2L 13964535..13964634 766..865 100   Plus

BS05201.complete Sequence

1241 bp (1241 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635066

> BS05201.complete
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGT
GTCGGCCAAAGTGTGAGAGATTCTGCGGCAAATACGGGCGTTGTGTGGCT
CCCGAAATCTGCGGCTGTGGTGAGGGTCAACAGCATTGCCGGAACGGAAG
CTGTGACGATATCGAGCACTGCAGTTGCCCATCGGGGGAAACCCACTTCA
TCGATCGCTGTTTGAAGGCGGACCGCCTCAGTCAGCATCTCAACACTAGC
GAAAAGAGAAAGCACTTCAATCGCCAACTTGCTTATGAGTTTAATGCCCT
GATAGGGCGTCTATTTAATTTCTGAAAGCTTTCTAGACCAT

BS05201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1209 CG33119-PA 1..1209 17..1225 6045 100 Plus
NimB1-RB 1212 CG33119-PB 1..1212 17..1225 5980 99.8 Plus
NimB4-RA 1347 CG33115-PA 728..810 639..721 205 83.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1286 CG33119-RA 42..1250 17..1225 6045 100 Plus
NimB1-RB 1289 CG33119-RB 42..1253 17..1225 5980 99.8 Plus
NimB2-RA 1435 CG31839-RA 1395..1435 1225..1185 205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963899..13964457 208..766 2795 100 Plus
2L 23513712 2L 13964795..13965052 968..1225 1290 100 Plus
2L 23513712 2L 13964535..13964738 766..969 1020 100 Plus
2L 23513712 2L 13963548..13963738 17..207 955 100 Plus
2L 23513712 2L 13968941..13969023 721..639 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-27 08:17:59 has no hits.

BS05201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:13 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
CG33119-RA 1..1209 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:17 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
nimB1-RA 3..1211 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:21 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 42..1249 17..1224 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:13 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
CG33119-RA 3..1211 17..1225 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:14 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 42..1249 17..1224 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:14 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13963548..13963738 17..207 100 -> Plus
2L 13963899..13964456 208..765 100 -> Plus
2L 13964535..13964738 766..969 100 -> Plus
2L 13964797..13965051 970..1224 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:21 Download gff for BS05201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963548..13963738 17..207 100 -> Plus
arm_2L 13963899..13964456 208..765 100 -> Plus
arm_2L 13964535..13964738 766..969 100 -> Plus
arm_2L 13964797..13965051 970..1224 100   Plus

BS05201.pep Sequence

Translation from 16 to 1224

> BS05201.pep
MHCSGPLAGLTALLTLVAFPVQIKTDSTVSTELYGDIENTEYGDFESLSQ
TRERQQHLCHREVPSVFFQTERDSPVRGNGSTIYFHRIEVCCAGYRRDPY
ANECVPDCSASSPDNCRNGFCRSPGVCECFAEFVRNEHGACIHTCPIACQ
HGRCYLNGTCVCHQNFVLDQETRQFCRPKCSQSCGTHEECVAPGQCDCSP
GYRRTPDLGCQPVCAPDCGFGKCVAPNQCECFAGFIKRPNWNVCEAECYL
NCENGLCESRYKCHCREGYRYDVNTTSCLPECSDNCGQGNGVCIAPGVCR
CFRGYEVHGAECRPKCERFCGKYGRCVAPEICGCGEGQQHCRNGSCDDIE
HCSCPSGETHFIDRCLKADRLSQHLNTSEKRKHFNRQLAYEFNALIGRLF
NF*

BS05201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-PA 402 CG33119-PA 1..402 1..402 2337 100 Plus
NimB1-PB 403 CG33119-PB 1..403 1..402 2325 99.8 Plus
NimB4-PA 448 CG33115-PA 92..438 59..401 972 48.3 Plus
NimB2-PA 421 CG31839-PA 134..406 58..337 568 40 Plus
NimB5-PC 315 CG16873-PC 92..314 53..280 516 44.2 Plus
NimB2-PA 421 CG31839-PA 167..337 198..357 318 36.9 Plus
NimB2-PA 421 CG31839-PA 270..409 91..237 255 39.6 Plus
NimB2-PA 421 CG31839-PA 167..313 231..365 208 32.7 Plus
NimB2-PA 421 CG31839-PA 302..421 91..213 199 35.4 Plus