Clone BS05202 Report

Search the DGRC for BS05202

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRpt5-RA
Protein status:BS05202.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05202.3prime Sequence

910 bp (845 high quality bases) assembled on 2005-12-02

> BS05202.3prime
ATGGTCTAGAAAGCTTCTAAGCGTAGTAGTTAAGATTAGCCTTCTTCTTC
GCCTGCACTTCCATGATGGCGTCCATGAAGTCTTCGTGCGTAACCGAATT
GGCGGAGCGACGCAGTGCGATCATACCAGCTTCCACACAGACGGCTTTGC
ACTGGGCGCCGTTGAAGTCATCCGTGGATCGGGACAATTCCTCGAAATTC
ACATCATTGCTAACGTTCATTTTACGCGAGTGAATCTGCATAATACGGGC
ACGGGCTTCCTCGTTGGGATGTGGGAACTCGATCTTACGATCCAGACGAC
CAGAGCGCAGCAGAGCAGGATCCAGAATGTCTACGCGATTGGTGGCCGCA
ATCACCTTAATATCTGCAGTGGAACTGAAGCCATCGAGCTGATTAAGAAG
CTCCAACATAGTTCGCTGGACCTCACGGTCACCGGCCTTCTCCGAATCGA
AACGCTTGGTGCCAATGGCGTCCAACTCGTCAATGAAGATAATGGCAGGC
GCCTTCTCCTTGGCCAAGGCGAAGGCATCGCGCACCAGCTTGGCACCATC
ACCGATGAACATTTGCACCAACTGGGGACCTGCCAGCTTGAGGAAGGTGG
ACTTTGTCTGAGCGGCGCAGGCACGGGCCAGCAATGTTTTGCCAGTTCCA
GGGGGGCCGTACAAAAGGACACCTTTGGGTGGGTGAATGCCAAGGTTTTT
GAACTTCTCCTTGTGCGTCATGGGCAGCACCACTGCCTCGATGAGCTCCT
GTATCTGCTTGTCCAAACCTCCAATGTCGGAGTACTGCTCTGTAGGTCGC
TCGTCCACTTCCATGGCTTTTACGCGGGCATCATACTCTGCCGGCAGGGT
TTCCAGGATCAAATAGGAGTCTTTGTTGACTCCGACCAGATCACCTGGCT
TCAGTTTCTC

BS05202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10370-PA 1287 Tbp-1-RA 394..1287 910..17 4470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt5-RA 1627 CG10370-RA 532..1426 910..16 4475 100 Minus
Rpt3-RB 1553 CG16916-RB 955..1198 516..273 290 75.1 Minus
Rpt3-RA 1423 CG16916-RA 825..1068 516..273 290 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23753764..23754422 674..16 3295 100 Minus
3R 32079331 3R 23753471..23753711 910..670 1205 100 Minus
X 23542271 X 11126187..11126430 516..273 290 74.6 Minus
X 23542271 X 21317184..21317357 424..251 285 77.6 Minus
3R 32079331 3R 30582518..30582688 254..424 195 74.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:17:56 has no hits.

BS05202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:19 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-1-PA 394..1287 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:44 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10370-PA 394..1287 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:14 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 532..1428 12..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:25 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 532..1428 12..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:25 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23753471..23753708 673..910 100 -> Minus
3R 23753766..23754424 12..672 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:14 Download gff for BS05202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19579193..19579430 673..910 100 -> Minus
arm_3R 19579488..19580146 12..672 99   Minus

BS05202.5prime Sequence

897 bp (736 high quality bases) assembled on 2005-11-29

> BS05202.5prime
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAAGGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATTCGGAGAAGGCCGGTGACCGTGA

BS05202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10370-PA 1287 Tbp-1-RA 1..881 17..897 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt5-RA 1627 CG10370-RA 136..1019 14..897 4420 100 Plus
Rpt3-RB 1553 CG16916-RB 955..1032 804..881 225 85.9 Plus
Rpt3-RA 1423 CG16916-RA 825..902 804..881 225 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23753286..23753711 225..650 2130 100 Plus
3R 32079331 3R 23753764..23754015 646..897 1260 100 Plus
3R 32079331 3R 23753011..23753225 14..228 1075 100 Plus
X 23542271 X 11126187..11126264 804..881 225 85.9 Plus
Blast to na_te.dros performed on 2015-02-04 04:24:31 has no hits.

BS05202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:20 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
Tbp-1-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:45 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10370-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:57 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 136..1018 14..896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:40 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 136..1018 14..896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:40 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23753011..23753223 14..226 100 -> Plus
3R 23753288..23753708 227..647 100 -> Plus
3R 23753766..23754014 648..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:57 Download gff for BS05202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19578733..19578945 14..226 100 -> Plus
arm_3R 19579010..19579430 227..647 100 -> Plus
arm_3R 19579488..19579736 648..896 100   Plus

BS05202.complete Sequence

1319 bp (1319 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635067

> BS05202.complete
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAAGGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATTCGGAGAAGGCCGGTGACCGTGAGGT
CCAGCGAACTATGTTGGAGCTTCTTAATCAGCTCGATGGCTTCAGTTCCA
CTGCAGATATTAAGGTGATTGCGGCCACCAATCGCGTAGACATTCTGGAT
CCTGCTCTGCTGCGCTCTGGTCGTCTGGATCGTAAGATCGAGTTCCCACA
TCCCAACGAGGAAGCCCGTGCCCGTATTATGCAGATTCACTCGCGTAAAA
TGAACGTTAGCAATGATGTGAATTTCGAGGAATTGTCCCGATCCACGGAT
GACTTCAACGGCGCCCAGTGCAAAGCCGTCTGTGTGGAAGCTGGTATGAT
CGCACTGCGTCGCTCCGCCAATTCGGTTACGCACGAAGACTTCATGGACG
CCATCATGGAAGTGCAGGCGAAGAAGAAGGCTAATCTTAACTACTACGCT
TAGAAGCTTTCTAGACCAT

BS05202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt5-RA 1287 CG10370-PA 1..1287 17..1303 6435 100 Plus
Rpt3-RB 1242 CG16916-PB 743..986 804..1047 290 74.6 Plus
Rpt3-RA 1242 CG16916-PA 743..986 804..1047 290 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt5-RA 1627 CG10370-RA 136..1426 14..1304 6455 100 Plus
Rpt3-RB 1553 CG16916-RB 955..1198 804..1047 290 74.6 Plus
Rpt3-RA 1423 CG16916-RA 825..1068 804..1047 290 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23753764..23754422 646..1304 3295 100 Plus
3R 32079331 3R 23753286..23753711 225..650 2130 100 Plus
3R 32079331 3R 23753011..23753225 14..228 1075 100 Plus
X 23542271 X 11126187..11126430 804..1047 290 74.6 Plus
X 23542271 X 21317184..21317357 896..1069 285 77.6 Plus
3R 32079331 3R 30582518..30582688 1066..896 195 74.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:52 has no hits.

BS05202.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:14 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-1-RA 1..1287 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:19 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-1-RA 134..1426 14..1308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:28 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 139..1425 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:14 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
Tbp-1-RA 134..1426 14..1308 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:19 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt5-RA 139..1425 17..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:19 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23753014..23753223 17..226 100 -> Plus
3R 23753288..23753708 227..647 100 -> Plus
3R 23753766..23754421 648..1303 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:28 Download gff for BS05202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19578736..19578945 17..226 100 -> Plus
arm_3R 19579010..19579430 227..647 100 -> Plus
arm_3R 19579488..19580143 648..1303 100   Plus

BS05202.pep Sequence

Translation from 16 to 1302

> BS05202.pep
MAQTLEDKSIWEDGEESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIR
ITHEIQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVT
VLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL
ETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEK
FKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML
ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA
RARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS
ANSVTHEDFMDAIMEVQAKKKANLNYYA*

BS05202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt5-PA 428 CG10370-PA 1..428 1..428 2156 100 Plus
Rpt2-PB 439 CG5289-PB 72..430 43..421 909 47 Plus
Rpt2-PA 439 CG5289-PA 72..430 43..421 909 47 Plus
Rpt6-PA 405 CG1489-PA 82..392 109..419 812 51.8 Plus
Rpt3-PB 413 CG16916-PB 49..394 55..409 804 44.5 Plus