Clone Sequence Records
BS05202.3prime Sequence
910 bp (845 high quality bases) assembled on 2005-12-02
> BS05202.3prime
ATGGTCTAGAAAGCTTCTAAGCGTAGTAGTTAAGATTAGCCTTCTTCTTC
GCCTGCACTTCCATGATGGCGTCCATGAAGTCTTCGTGCGTAACCGAATT
GGCGGAGCGACGCAGTGCGATCATACCAGCTTCCACACAGACGGCTTTGC
ACTGGGCGCCGTTGAAGTCATCCGTGGATCGGGACAATTCCTCGAAATTC
ACATCATTGCTAACGTTCATTTTACGCGAGTGAATCTGCATAATACGGGC
ACGGGCTTCCTCGTTGGGATGTGGGAACTCGATCTTACGATCCAGACGAC
CAGAGCGCAGCAGAGCAGGATCCAGAATGTCTACGCGATTGGTGGCCGCA
ATCACCTTAATATCTGCAGTGGAACTGAAGCCATCGAGCTGATTAAGAAG
CTCCAACATAGTTCGCTGGACCTCACGGTCACCGGCCTTCTCCGAATCGA
AACGCTTGGTGCCAATGGCGTCCAACTCGTCAATGAAGATAATGGCAGGC
GCCTTCTCCTTGGCCAAGGCGAAGGCATCGCGCACCAGCTTGGCACCATC
ACCGATGAACATTTGCACCAACTGGGGACCTGCCAGCTTGAGGAAGGTGG
ACTTTGTCTGAGCGGCGCAGGCACGGGCCAGCAATGTTTTGCCAGTTCCA
GGGGGGCCGTACAAAAGGACACCTTTGGGTGGGTGAATGCCAAGGTTTTT
GAACTTCTCCTTGTGCGTCATGGGCAGCACCACTGCCTCGATGAGCTCCT
GTATCTGCTTGTCCAAACCTCCAATGTCGGAGTACTGCTCTGTAGGTCGC
TCGTCCACTTCCATGGCTTTTACGCGGGCATCATACTCTGCCGGCAGGGT
TTCCAGGATCAAATAGGAGTCTTTGTTGACTCCGACCAGATCACCTGGCT
TCAGTTTCTC
BS05202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10370-PA | 1287 | Tbp-1-RA | 394..1287 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 532..1426 | 910..16 | 4475 | 100 | Minus |
Rpt3-RB | 1553 | CG16916-RB | 955..1198 | 516..273 | 290 | 75.1 | Minus |
Rpt3-RA | 1423 | CG16916-RA | 825..1068 | 516..273 | 290 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753764..23754422 | 674..16 | 3295 | 100 | Minus |
3R | 32079331 | 3R | 23753471..23753711 | 910..670 | 1205 | 100 | Minus |
X | 23542271 | X | 11126187..11126430 | 516..273 | 290 | 74.6 | Minus |
X | 23542271 | X | 21317184..21317357 | 424..251 | 285 | 77.6 | Minus |
3R | 32079331 | 3R | 30582518..30582688 | 254..424 | 195 | 74.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:17:56 has no hits.
BS05202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:19 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-PA | 394..1287 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:44 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10370-PA | 394..1287 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:14 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 532..1428 | 12..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:25 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 532..1428 | 12..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:25 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753471..23753708 | 673..910 | 100 | -> | Minus |
3R | 23753766..23754424 | 12..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:14 Download gff for
BS05202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19579193..19579430 | 673..910 | 100 | -> | Minus |
arm_3R | 19579488..19580146 | 12..672 | 99 | | Minus |
BS05202.5prime Sequence
897 bp (736 high quality bases) assembled on 2005-11-29
> BS05202.5prime
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAAGGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATTCGGAGAAGGCCGGTGACCGTGA
BS05202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10370-PA | 1287 | Tbp-1-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 136..1019 | 14..897 | 4420 | 100 | Plus |
Rpt3-RB | 1553 | CG16916-RB | 955..1032 | 804..881 | 225 | 85.9 | Plus |
Rpt3-RA | 1423 | CG16916-RA | 825..902 | 804..881 | 225 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753286..23753711 | 225..650 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 23753764..23754015 | 646..897 | 1260 | 100 | Plus |
3R | 32079331 | 3R | 23753011..23753225 | 14..228 | 1075 | 100 | Plus |
X | 23542271 | X | 11126187..11126264 | 804..881 | 225 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:24:31 has no hits.
BS05202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:20 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:45 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10370-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:57 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 136..1018 | 14..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:40 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 136..1018 | 14..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:40 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753011..23753223 | 14..226 | 100 | -> | Plus |
3R | 23753288..23753708 | 227..647 | 100 | -> | Plus |
3R | 23753766..23754014 | 648..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:57 Download gff for
BS05202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19578733..19578945 | 14..226 | 100 | -> | Plus |
arm_3R | 19579010..19579430 | 227..647 | 100 | -> | Plus |
arm_3R | 19579488..19579736 | 648..896 | 100 | | Plus |
BS05202.complete Sequence
1319 bp (1319 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635067
> BS05202.complete
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAAGGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATTCGGAGAAGGCCGGTGACCGTGAGGT
CCAGCGAACTATGTTGGAGCTTCTTAATCAGCTCGATGGCTTCAGTTCCA
CTGCAGATATTAAGGTGATTGCGGCCACCAATCGCGTAGACATTCTGGAT
CCTGCTCTGCTGCGCTCTGGTCGTCTGGATCGTAAGATCGAGTTCCCACA
TCCCAACGAGGAAGCCCGTGCCCGTATTATGCAGATTCACTCGCGTAAAA
TGAACGTTAGCAATGATGTGAATTTCGAGGAATTGTCCCGATCCACGGAT
GACTTCAACGGCGCCCAGTGCAAAGCCGTCTGTGTGGAAGCTGGTATGAT
CGCACTGCGTCGCTCCGCCAATTCGGTTACGCACGAAGACTTCATGGACG
CCATCATGGAAGTGCAGGCGAAGAAGAAGGCTAATCTTAACTACTACGCT
TAGAAGCTTTCTAGACCAT
BS05202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1287 | CG10370-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Rpt3-RB | 1242 | CG16916-PB | 743..986 | 804..1047 | 290 | 74.6 | Plus |
Rpt3-RA | 1242 | CG16916-PA | 743..986 | 804..1047 | 290 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 136..1426 | 14..1304 | 6455 | 100 | Plus |
Rpt3-RB | 1553 | CG16916-RB | 955..1198 | 804..1047 | 290 | 74.6 | Plus |
Rpt3-RA | 1423 | CG16916-RA | 825..1068 | 804..1047 | 290 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753764..23754422 | 646..1304 | 3295 | 100 | Plus |
3R | 32079331 | 3R | 23753286..23753711 | 225..650 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 23753011..23753225 | 14..228 | 1075 | 100 | Plus |
X | 23542271 | X | 11126187..11126430 | 804..1047 | 290 | 74.6 | Plus |
X | 23542271 | X | 21317184..21317357 | 896..1069 | 285 | 77.6 | Plus |
3R | 32079331 | 3R | 30582518..30582688 | 1066..896 | 195 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:52 has no hits.
BS05202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:14 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:19 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 134..1426 | 14..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:28 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 139..1425 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:14 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 134..1426 | 14..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:19 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 139..1425 | 17..1303 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:19 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753014..23753223 | 17..226 | 100 | -> | Plus |
3R | 23753288..23753708 | 227..647 | 100 | -> | Plus |
3R | 23753766..23754421 | 648..1303 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:28 Download gff for
BS05202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19578736..19578945 | 17..226 | 100 | -> | Plus |
arm_3R | 19579010..19579430 | 227..647 | 100 | -> | Plus |
arm_3R | 19579488..19580143 | 648..1303 | 100 | | Plus |
BS05202.pep Sequence
Translation from 16 to 1302
> BS05202.pep
MAQTLEDKSIWEDGEESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIR
ITHEIQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVT
VLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL
ETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEK
FKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML
ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA
RARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS
ANSVTHEDFMDAIMEVQAKKKANLNYYA*
BS05202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-PA | 428 | CG10370-PA | 1..428 | 1..428 | 2156 | 100 | Plus |
Rpt2-PB | 439 | CG5289-PB | 72..430 | 43..421 | 909 | 47 | Plus |
Rpt2-PA | 439 | CG5289-PA | 72..430 | 43..421 | 909 | 47 | Plus |
Rpt6-PA | 405 | CG1489-PA | 82..392 | 109..419 | 812 | 51.8 | Plus |
Rpt3-PB | 413 | CG16916-PB | 49..394 | 55..409 | 804 | 44.5 | Plus |