Clone Sequence Records
BS05203.3prime Sequence
834 bp (787 high quality bases) assembled on 2005-09-14
> BS05203.3prime
ATGGTCTAGAAAGCTTTTAATTTCTATTATGTTCCTTCTTCGATTTGTGA
CTACTCTTTGACTTGGACTTCTTTTGCTTGGATTTTGTACTCTTTTTGCG
TTTGCTGCGATCGTCCGACGATGAGGAGCTGCTAGAGCTGTCCTCGGAAC
TATCTGAAGATGTGGAGTCGCTTTCGGATTCCGAGGAACTTTCACTCGAA
TCTGAACTGCTGCTAGCTGCTCGTTTCGATTTCTTGGCTTGCTTTTTGCT
CTTTTCCACTGAAAGTTTTCTTTTCTTCTCATGACTCTTGTTAGGGCTTG
AGTGAGTGTCCATTCTATGGTCTTCCCGGTTCCTGGATTGTTGCCTCCGC
TCTGGCGATCTTCTTTGATTCCTGGAGGTTTCTCTATGCGATCTCTCATC
GTTACGTCTTCCTTCTTGAGGGGAATGGAATCGCCTGCTGTCATTGCGAT
CTCTGTTTTGAGTCGGTCTTTTTCCAGTTTGATCTCTAGATCTAGAACGC
CTTCTCTCATTTTGTTCCCTTGGCCTAGAGCGTCTTCTTTCCTTTTGGTC
CCTTGACCTAGAACGTCTTCCTAATTGGTCTCTAGGCCTAGAAGGCCTTC
TCTCTTCTCGATCTCTTGACCTAGAGTACCTTCTATGTGTTGCATCCCGA
GACCTCGATGACCTTTTTTCATTGCGATTCCTTTCGCGATTTGAGTTCTC
TCTGACTGACTCATTTTGCGATTTTTTCGATCTATAAACACTTTTTTCAT
CTTTTTCCTTCGATCTGGTGCGTCTTTGCAAATTCTTTCGAACATCTCGT
TCGCTTTGCTCCTGGTGTCGCTGTTCTCTCGCTT
BS05203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-PA | 1962 | CG5808-RA | 1145..1962 | 834..17 | 4065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-RA | 2043 | CG5808-RA | 1200..2018 | 834..16 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24815311..24815808 | 337..834 | 2460 | 99.6 | Plus |
3R | 32079331 | 3R | 24814928..24815258 | 16..346 | 1640 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:17:24 has no hits.
BS05203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:22 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-PA | 1145..1962 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:47 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-PA | 1145..1962 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:26 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 1200..2018 | 16..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:17 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 1200..2018 | 16..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:17 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24814928..24815256 | 16..344 | 99 | <- | Plus |
3R | 24815319..24815808 | 345..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:26 Download gff for
BS05203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20640650..20640978 | 16..344 | 99 | <- | Plus |
arm_3R | 20641041..20641530 | 345..834 | 100 | | Plus |
BS05203.5prime Sequence
918 bp (728 high quality bases) assembled on 2005-12-02
> BS05203.5prime
GAAGTTATCAGTCGACATGTCGGTGGTTATAGAAACCACGATGGGTGACC
TGACCGTCGACCTGTTCATCAGCGAGCGCCCAATTGCCTGCCTAAACTTC
CTCAAGCTGTGCCGGCTGAAGTACTATAACTTCAATCTATTTCACACGGT
GCAGCAGGGATTCATCGCCCAAACAGGCGATCCGAGTGGAGCTGGAGACG
GCGGATCCTCCATCTGGGGCGTGGTGGAGGGTCCGCAAAAGCGCTTCTTC
GAGGCGGAGTTCCTGCCCAAGATTAACCACTCCAGTGCCGGAATGCTATC
GCTGGTCAGTGCAGGCAAGAATCTGGTGGGATCCCAGTTCTTCCTCACGC
TGGGTGAGAACCTAACATCGCTGGACGGCAACCACTGCGTTATCGGTGAA
GTGGTGGAAGGTCACGAGGTGCTGCGCAAGCTAAACGACGCCATTGTTGA
CGACAGCTTCCGTCCTTACCAGGATATACGCATCACACACACTGTTGTGC
TTGAGGATCCGTTTCCTAATCCGCGCGGCCTTCAGGCTCCAAGTCGCTCA
CCTTCGCCCAGTGCGGAGCGTCTGAAGAACGGGCGCATCGCTGCCGACGA
GGATATCGATGACACTGATGGCATGACCGCGGAGGAGATGCAGGAGATGC
TGGCCGAACGAGAGGCCAAGGCTCGAGCCACAATCCTTGAGATTGTCGGC
GATTTACCCGATGCAGACATGGCTCCGCCAGAAAATGTCTTGTTTGTGTG
CAAACTCAATCCTGTTACAACCGACGATGATCTGGAGATAATCTTTAGTA
GCTTCGGCGTGCTTAAAGGATGTGAGGTGATTCGCGACCCGCAAAACGGA
GATTCTCTGCAATATGCTTTTGTGGAGTTCGAGGATCAAAAATCTTGTGA
GGCCGCATATTTCAAAAT
BS05203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-PA | 1962 | CG5808-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
CG5808-PA | 1962 | CG5808-RA | 832..902 | 848..918 | 355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-RA | 2043 | CG5808-RA | 56..957 | 17..918 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24816051..24816952 | 918..17 | 4435 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:02:27 has no hits.
BS05203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:23 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:48 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:05 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 49..957 | 12..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:55 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 49..957 | 12..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:55 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24816051..24816959 | 12..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:05 Download gff for
BS05203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20641773..20642681 | 12..918 | 99 | | Minus |
BS05203.complete Sequence
1994 bp assembled on 2008-01-02
GenBank Submission: FJ635068
> BS05203.complete
GAAGTTATCAGTCGACATGTCGGTGGTTATAGAAACCACGATGGGTGACC
TGACCGTCGACCTGTTCATCAGCGAGCGCCCAATTGCCTGCCTAAACTTC
CTCAAGCTGTGCCGGCTGAAGTACTATAACTTCAATCTATTTCACACGGT
GCAGCAGGGATTCATCGCCCAAACAGGCGATCCGAGTGGAGCTGGAGACG
GCGGATCCTCCATCTGGGGCGTGGTGGAGGGTCCGCAAAAGCGCTTCTTC
GAGGCGGAGTTCCTGCCCAAGATTAACCACTCCAGTGCCGGAATGCTATC
GCTGGTCAGTGCAGGCAAGAATCTGGTGGGATCCCAGTTCTTCCTCACGC
TGGGTGAGAACCTAACATCGCTGGACGGCAACCACTGCGTTATCGGTGAA
GTGGTGGAAGGTCACGAGGTGCTGCGCAAGCTAAACGACGCCATTGTTGA
CGACAGCTTCCGTCCTTACCAGGATATACGCATCACACACACTGTTGTGC
TTGAGGATCCGTTTCCTAATCCGCGCGGCCTTCAGGCTCCAAGTCGCTCA
CCTTCGCCCAGTGCGGAGCGTCTGAAGAACGGGCGCATCGCTGCCGACGA
GGATATCGATGACACTGATGGCATGACCGCGGAGGAGATGCAGGAGATGC
TGGCCGAACGAGAGGCCAAGGCTCGAGCCACAATCCTTGAGATTGTCGGC
GATTTACCCGATGCAGACATGGCTCCGCCAGAAAATGTCTTGTTTGTGTG
CAAACTCAATCCTGTTACAACCGACGATGATCTGGAGATAATCTTTAGTA
GCTTCGGCGTGCTTAAAGGATGTGAGGTGATTCGCGACCGCAAAACGGGA
GATTCTCTGCAATATGCTTTTGTGGAGTTCGAGGATCAAAAATCTTGTGA
GGCCGCATATTTCAAAATGGATAATGTGCTTATCGACGATCGACGCATCC
ACGTGGACTTCTCCCAATCCGTTTCAAAGGTCACCTGGCGGGGCAAAGGA
CGTGGTATTGAGGGCGACTATAGAAAGCTGGATTTTAACAATTTGCGAGA
CGACAAAGATCACAGGAAACCAAACAATGGCCGGTCCAGAACAGAAGACC
ATAAGGAGCGCAACAGGACGGAAGATTTTCGAAATAGGATGAGCTCTGCA
GAGCGAAGAAAAGCGAGAGAACAGCGACACCAGGAGCAAAGCGAACGAGA
TGTTCGAAAGAATTTGCAAAGACGCACCAGATCGAAGGAAAAAGATGAAA
AAAGTGTTTATAGATCGAAAAAATCGCAAAATGAGTCAGTCAGAGAGAAC
TCAAATCGCGAAAGGAATCGCAATGAAAAAAGGTCATCGAGGTCTCGGGA
TGCAACACATAGAAGGTACTCTAGGTCAAGAGATCGAGAAGAGAGAAGGC
CTTCTAGGCCTAGAGACCAATTAGGAAGACGTTCTAGGTCAAGGGACCAA
AAGGAAAGAAGACGCTCTAGGCCAAGGGAACAAAATGAGAGAAGGCGTTC
TAGATCTAGAGATCAAACTGGAAAAAGACCGACTCAAAACAGAGATCGCA
ATGACAGCAGGCGATTCCATTCCCCTCAAGAAGGAAGACGTAACGATGAG
AGATCGCATAGAGAAACCTCCAGGAATCAAAGAAGATCGCCAGAGCGGAG
GCAACAATCCAGGAACCGGGAAGACCATAGAATGGACACTCACTCAAGCC
CTAACAAGAGTCATGAGAAGAAAAGAAAACTTTCAGTGGAAAAGAGCAAA
AAGCAAGCCAAGAAATCGAAACGAGCAGCTAGCAGCAGTTCAGATTCGAG
TGAAAGTTCCTCGGAATCCGAAAGCGACTCCACATCTTCAGATAGTTCCG
AGGACAGCTCTAGCAGCTCCTCATCGTCGGACGATCGCAGCAAACGCAAA
AAGAGTACAAAATCCAAGCAAAAGAAGTCCAAGTCAAAGAGTAGTCACAA
ATCGAAGAAGAAACATAATAGAAATTAAAAGCTTTCTAGACCAT
BS05203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-RA | 1962 | CG5808-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-RA | 2043 | CG5808-RA | 56..2018 | 17..1979 | 9815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24815311..24816952 | 1658..17 | 8180 | 99.9 | Minus |
3R | 32079331 | 3R | 24814928..24815258 | 1979..1649 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:39:54 has no hits.
BS05203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:39 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 1..1962 | 17..1978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:23 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 56..2015 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:07 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 56..2015 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:39 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 49..2018 | 12..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:54 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5808-RA | 56..2015 | 17..1976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:54 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24814931..24815256 | 1651..1976 | 100 | <- | Minus |
3R | 24815319..24816952 | 17..1650 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:07 Download gff for
BS05203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20640653..20640978 | 1651..1976 | 100 | <- | Minus |
arm_3R | 20641041..20642674 | 17..1650 | 100 | | Minus |
BS05203.pep Sequence
Translation from 16 to 1977
> BS05203.pep
MSVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFI
AQTGDPSGAGDGGSSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAG
KNLVGSQFFLTLGENLTSLDGNHCVIGEVVEGHEVLRKLNDAIVDDSFRP
YQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLKNGRIAADEDIDDT
DGMTAEEMQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPV
TTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFK
MDNVLIDDRRIHVDFSQSVSKVTWRGKGRGIEGDYRKLDFNNLRDDKDHR
KPNNGRSRTEDHKERNRTEDFRNRMSSAERRKAREQRHQEQSERDVRKNL
QRRTRSKEKDEKSVYRSKKSQNESVRENSNRERNRNEKRSSRSRDATHRR
YSRSRDREERRPSRPRDQLGRRSRSRDQKERRRSRPREQNERRRSRSRDQ
TGKRPTQNRDRNDSRRFHSPQEGRRNDERSHRETSRNQRRSPERRQQSRN
REDHRMDTHSSPNKSHEKKRKLSVEKSKKQAKKSKRAASSSSDSSESSSE
SESDSTSSDSSEDSSSSSSSSDDRSKRKKSTKSKQKKSKSKSSHKSKKKH
NRN*
BS05203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5808-PA | 653 | CG5808-PA | 1..653 | 1..653 | 3355 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 282..496 | 3..235 | 334 | 34.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 395..712 | 344..652 | 321 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 448..749 | 347..641 | 310 | 26.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 419..723 | 344..652 | 308 | 24.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 360..687 | 336..652 | 307 | 23.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 464..772 | 344..649 | 306 | 28.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 440..738 | 344..649 | 304 | 23.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 312..621 | 344..652 | 300 | 24.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 348..670 | 344..652 | 296 | 24.2 | Plus |
CG7971-PG | 1062 | CG7971-PG | 186..562 | 273..649 | 293 | 27.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 265..568 | 341..649 | 286 | 22.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 336..639 | 344..649 | 285 | 21.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 288..585 | 344..649 | 279 | 22.1 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..168 | 3..156 | 278 | 39 | Plus |
CG2839-PA | 826 | CG2839-PA | 494..806 | 344..647 | 274 | 24.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 263..528 | 386..649 | 233 | 22.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 255..495 | 410..649 | 199 | 18.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 269..463 | 453..652 | 173 | 19.8 | Plus |