Clone Sequence Records
BS05204.3prime Sequence
933 bp (797 high quality bases) assembled on 2005-12-02
> BS05204.3prime
ATGGTCTAGAAAGCTTTTAGTTTGTAGTAATCGTTATGGCCTGGGCCGGC
GATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGG
CTTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGG
AGCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCC
GATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTG
GAGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCA
GGTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCA
CTGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCGCGCCGACGATCCAAC
TCCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGT
CGCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGG
GGACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCT
GAGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCA
TCCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCA
TTGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGAT
GAATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAAT
TCCGGACCGTAGAATCGTGGAACGGGTGCTTCAGTGACTCGTCATCGCAG
AAGAAGCCCCGCTTGTACGGCTCGCCCAGCAGGAAAAACAGCAGTATGGG
AAATCCAGCGCAGAGCAAGATTAAAACATCAAAGCCCACGCGGCAGAGGA
TTCTTTTTGTGGTATCCATGTCGACTGATAACT
BS05204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 237..1140 | 920..17 | 4445 | 99.6 | Minus |
CG8804-PA | 903 | wun-RA | 13..903 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 219..1122 | 920..17 | 4475 | 99.7 | Minus |
wun-RB | 2026 | CG8804-RB | 619..1522 | 920..17 | 4475 | 99.7 | Minus |
wun-RC | 1563 | CG8804-RC | 619..1408 | 920..131 | 3905 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 486..707 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 9402656..9402836 | 308..488 | 905 | 100 | Plus |
2R | 25286936 | 2R | 9402408..9402586 | 130..308 | 895 | 100 | Plus |
2R | 25286936 | 2R | 9404307..9404459 | 707..859 | 765 | 100 | Plus |
2R | 25286936 | 2R | 9401035..9401149 | 17..131 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9409213..9409274 | 859..920 | 265 | 95.2 | Plus |
3L | 28110227 | 3L | 22472833..22473048 | 367..152 | 210 | 73.1 | Minus |
2R | 25286936 | 2R | 9417435..9417540 | 267..162 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:06:04 has no hits.
BS05204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:24 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-PA | 1..903 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:49 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PB | 231..1140 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:54:46 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1522 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:16 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1522 | 17..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:16 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9402409..9402585 | 131..307 | 100 | <- | Plus |
2R | 9402656..9402835 | 308..487 | 100 | <- | Plus |
2R | 9403707..9403925 | 488..706 | 100 | <- | Plus |
2R | 9404307..9404458 | 707..858 | 100 | <- | Plus |
2R | 9409213..9409280 | 859..927 | 91 | | Plus |
2R | 9401035..9401148 | 17..130 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:54:46 Download gff for
BS05204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5288540..5288653 | 17..130 | 100 | <- | Plus |
arm_2R | 5289914..5290090 | 131..307 | 100 | <- | Plus |
arm_2R | 5290161..5290340 | 308..487 | 100 | <- | Plus |
arm_2R | 5291212..5291430 | 488..706 | 100 | <- | Plus |
arm_2R | 5291812..5291963 | 707..858 | 100 | <- | Plus |
arm_2R | 5296718..5296785 | 859..927 | 91 | | Plus |
BS05204.5prime Sequence
884 bp (841 high quality bases) assembled on 2005-12-02
> BS05204.5prime
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCAT
BS05204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 237..1105 | 16..884 | 4345 | 100 | Plus |
CG8804-PA | 903 | wun-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 219..1087 | 16..884 | 4345 | 100 | Plus |
wun-RB | 2026 | CG8804-RB | 619..1487 | 16..884 | 4345 | 100 | Plus |
wun-RC | 1563 | CG8804-RC | 619..1408 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 450..229 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 628..448 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9402408..9402586 | 806..628 | 895 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 229..77 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9401070..9401149 | 884..805 | 400 | 100 | Minus |
2R | 25286936 | 2R | 9409213..9409274 | 77..16 | 310 | 100 | Minus |
3L | 28110227 | 3L | 22472833..22473048 | 569..784 | 210 | 73.1 | Plus |
2R | 25286936 | 2R | 9417435..9417540 | 669..774 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:34 has no hits.
BS05204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:25 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-PB | 231..1105 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:50 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PB | 231..1105 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:49:46 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1487 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:01 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1487 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:01 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9401070..9401148 | 806..884 | 100 | <- | Minus |
2R | 9402409..9402585 | 629..805 | 100 | <- | Minus |
2R | 9402656..9402835 | 449..628 | 100 | <- | Minus |
2R | 9403707..9403925 | 230..448 | 100 | <- | Minus |
2R | 9404307..9404458 | 78..229 | 100 | <- | Minus |
2R | 9409213..9409280 | 9..77 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:49:46 Download gff for
BS05204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5290161..5290340 | 449..628 | 100 | <- | Minus |
arm_2R | 5288575..5288653 | 806..884 | 100 | <- | Minus |
arm_2R | 5289914..5290090 | 629..805 | 100 | <- | Minus |
arm_2R | 5291212..5291430 | 230..448 | 100 | <- | Minus |
arm_2R | 5291812..5291963 | 78..229 | 100 | <- | Minus |
arm_2R | 5296718..5296785 | 9..77 | 95 | | Minus |
BS05204.complete Sequence
935 bp (935 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635069
> BS05204.complete
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCAT
AACGATTACTACAAACTAAAAGCTTTCTAGACCAT
BS05204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RB | 1140 | CG8804-PB | 237..1140 | 16..919 | 4520 | 100 | Plus |
wun-RA | 903 | CG8804-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
wun-RC | 1095 | CG8804-PC | 237..1026 | 16..805 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 219..1122 | 16..919 | 4520 | 100 | Plus |
wun-RB | 2026 | CG8804-RB | 619..1522 | 16..919 | 4520 | 100 | Plus |
wun-RC | 1563 | CG8804-RC | 619..1408 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 450..229 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 628..448 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9402408..9402586 | 806..628 | 895 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 229..77 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9401035..9401149 | 919..805 | 575 | 100 | Minus |
2R | 25286936 | 2R | 9409213..9409274 | 77..16 | 310 | 100 | Minus |
3L | 28110227 | 3L | 22472833..22473048 | 569..784 | 210 | 73.1 | Plus |
2R | 25286936 | 2R | 9417435..9417540 | 669..774 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:27:39 has no hits.
BS05204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:15 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 231..1140 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:20 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RA | 197..1106 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:59 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 620..1520 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:15 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RA | 197..1106 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:16 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 620..1520 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:16 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9403707..9403925 | 230..448 | 100 | <- | Minus |
2R | 9401037..9401148 | 806..917 | 100 | <- | Minus |
2R | 9402409..9402585 | 629..805 | 100 | <- | Minus |
2R | 9402656..9402835 | 449..628 | 100 | <- | Minus |
2R | 9404307..9404458 | 78..229 | 100 | <- | Minus |
2R | 9409213..9409273 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:59 Download gff for
BS05204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5291812..5291963 | 78..229 | 100 | <- | Minus |
arm_2R | 5296718..5296778 | 17..77 | 100 | | Minus |
arm_2R | 5288542..5288653 | 806..917 | 100 | <- | Minus |
arm_2R | 5289914..5290090 | 629..805 | 100 | <- | Minus |
arm_2R | 5290161..5290340 | 449..628 | 100 | <- | Minus |
arm_2R | 5291212..5291430 | 230..448 | 100 | <- | Minus |
BS05204.pep Sequence
Translation from 16 to 918
> BS05204.pep
MDTNKRILCRVGLDVLILLCAGFPILLFFLLGEPYKRGFFCDDESLKHPF
HDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNGNATSRRYVFMN
YELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQM
ADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAM
VYLALYLQARMTWRGSKLLRHLLQFLFIMVAWYTALSRVSDYKHHWSDVL
AGSLIGSISALVVANYVSDLFQKPNTKPYLARTVQDMNASPAQAITITTN
*
BS05204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-PA | 300 | CG8804-PA | 1..300 | 1..300 | 1573 | 100 | Plus |
wun-PB | 379 | CG8804-PB | 80..379 | 1..300 | 1573 | 100 | Plus |
wun-PC | 364 | CG8804-PC | 80..343 | 1..264 | 1385 | 99.6 | Plus |
wun2-PA | 350 | CG8805-PA | 85..347 | 5..265 | 755 | 52.9 | Plus |
wun2-PB | 246 | CG8805-PB | 1..243 | 25..265 | 716 | 54.3 | Plus |