Clone BS05204 Report

Search the DGRC for BS05204

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptwun-RA
Protein status:BS05204.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05204.3prime Sequence

933 bp (797 high quality bases) assembled on 2005-12-02

> BS05204.3prime
ATGGTCTAGAAAGCTTTTAGTTTGTAGTAATCGTTATGGCCTGGGCCGGC
GATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGG
CTTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGG
AGCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCC
GATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTG
GAGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCA
GGTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCA
CTGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCGCGCCGACGATCCAAC
TCCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGT
CGCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGG
GGACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCT
GAGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCA
TCCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCA
TTGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGAT
GAATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAAT
TCCGGACCGTAGAATCGTGGAACGGGTGCTTCAGTGACTCGTCATCGCAG
AAGAAGCCCCGCTTGTACGGCTCGCCCAGCAGGAAAAACAGCAGTATGGG
AAATCCAGCGCAGAGCAAGATTAAAACATCAAAGCCCACGCGGCAGAGGA
TTCTTTTTGTGGTATCCATGTCGACTGATAACT

BS05204.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8804-PB 1140 wun-RB 237..1140 920..17 4445 99.6 Minus
CG8804-PA 903 wun-RA 13..903 907..17 4430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 219..1122 920..17 4475 99.7 Minus
wun-RB 2026 CG8804-RB 619..1522 920..17 4475 99.7 Minus
wun-RC 1563 CG8804-RC 619..1408 920..131 3905 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 486..707 1110 100 Plus
2R 25286936 2R 9402656..9402836 308..488 905 100 Plus
2R 25286936 2R 9402408..9402586 130..308 895 100 Plus
2R 25286936 2R 9404307..9404459 707..859 765 100 Plus
2R 25286936 2R 9401035..9401149 17..131 575 100 Plus
2R 25286936 2R 9409213..9409274 859..920 265 95.2 Plus
3L 28110227 3L 22472833..22473048 367..152 210 73.1 Minus
2R 25286936 2R 9417435..9417540 267..162 200 79.2 Minus
Blast to na_te.dros performed on 2015-02-11 23:06:04 has no hits.

BS05204.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:24 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-PA 1..903 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:49 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8804-PB 231..1140 17..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:54:46 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1522 17..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:16 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1522 17..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:16 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9402409..9402585 131..307 100 <- Plus
2R 9402656..9402835 308..487 100 <- Plus
2R 9403707..9403925 488..706 100 <- Plus
2R 9404307..9404458 707..858 100 <- Plus
2R 9409213..9409280 859..927 91   Plus
2R 9401035..9401148 17..130 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:54:46 Download gff for BS05204.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5288540..5288653 17..130 100 <- Plus
arm_2R 5289914..5290090 131..307 100 <- Plus
arm_2R 5290161..5290340 308..487 100 <- Plus
arm_2R 5291212..5291430 488..706 100 <- Plus
arm_2R 5291812..5291963 707..858 100 <- Plus
arm_2R 5296718..5296785 859..927 91   Plus

BS05204.5prime Sequence

884 bp (841 high quality bases) assembled on 2005-12-02

> BS05204.5prime
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCAT

BS05204.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8804-PB 1140 wun-RB 237..1105 16..884 4345 100 Plus
CG8804-PA 903 wun-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 219..1087 16..884 4345 100 Plus
wun-RB 2026 CG8804-RB 619..1487 16..884 4345 100 Plus
wun-RC 1563 CG8804-RC 619..1408 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 450..229 1110 100 Minus
2R 25286936 2R 9402656..9402836 628..448 905 100 Minus
2R 25286936 2R 9402408..9402586 806..628 895 100 Minus
2R 25286936 2R 9404307..9404459 229..77 765 100 Minus
2R 25286936 2R 9401070..9401149 884..805 400 100 Minus
2R 25286936 2R 9409213..9409274 77..16 310 100 Minus
3L 28110227 3L 22472833..22473048 569..784 210 73.1 Plus
2R 25286936 2R 9417435..9417540 669..774 200 79.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:18:34 has no hits.

BS05204.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:25 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-PB 231..1105 9..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:50 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8804-PB 231..1105 9..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:49:46 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1487 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:01 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1487 9..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:01 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9401070..9401148 806..884 100 <- Minus
2R 9402409..9402585 629..805 100 <- Minus
2R 9402656..9402835 449..628 100 <- Minus
2R 9403707..9403925 230..448 100 <- Minus
2R 9404307..9404458 78..229 100 <- Minus
2R 9409213..9409280 9..77 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:49:46 Download gff for BS05204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5290161..5290340 449..628 100 <- Minus
arm_2R 5288575..5288653 806..884 100 <- Minus
arm_2R 5289914..5290090 629..805 100 <- Minus
arm_2R 5291212..5291430 230..448 100 <- Minus
arm_2R 5291812..5291963 78..229 100 <- Minus
arm_2R 5296718..5296785 9..77 95   Minus

BS05204.complete Sequence

935 bp (935 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635069

> BS05204.complete
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCAT
AACGATTACTACAAACTAAAAGCTTTCTAGACCAT

BS05204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RB 1140 CG8804-PB 237..1140 16..919 4520 100 Plus
wun-RA 903 CG8804-PA 1..903 17..919 4515 100 Plus
wun-RC 1095 CG8804-PC 237..1026 16..805 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 219..1122 16..919 4520 100 Plus
wun-RB 2026 CG8804-RB 619..1522 16..919 4520 100 Plus
wun-RC 1563 CG8804-RC 619..1408 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 450..229 1110 100 Minus
2R 25286936 2R 9402656..9402836 628..448 905 100 Minus
2R 25286936 2R 9402408..9402586 806..628 895 100 Minus
2R 25286936 2R 9404307..9404459 229..77 765 100 Minus
2R 25286936 2R 9401035..9401149 919..805 575 100 Minus
2R 25286936 2R 9409213..9409274 77..16 310 100 Minus
3L 28110227 3L 22472833..22473048 569..784 210 73.1 Plus
2R 25286936 2R 9417435..9417540 669..774 200 79.2 Plus
Blast to na_te.dros performed on 2014-11-27 15:27:39 has no hits.

BS05204.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:15 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 231..1140 9..919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:20 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 197..1106 9..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:59 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 620..1520 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:15 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 197..1106 9..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:16 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 620..1520 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:16 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9403707..9403925 230..448 100 <- Minus
2R 9401037..9401148 806..917 100 <- Minus
2R 9402409..9402585 629..805 100 <- Minus
2R 9402656..9402835 449..628 100 <- Minus
2R 9404307..9404458 78..229 100 <- Minus
2R 9409213..9409273 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:59 Download gff for BS05204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5291812..5291963 78..229 100 <- Minus
arm_2R 5296718..5296778 17..77 100   Minus
arm_2R 5288542..5288653 806..917 100 <- Minus
arm_2R 5289914..5290090 629..805 100 <- Minus
arm_2R 5290161..5290340 449..628 100 <- Minus
arm_2R 5291212..5291430 230..448 100 <- Minus

BS05204.pep Sequence

Translation from 16 to 918

> BS05204.pep
MDTNKRILCRVGLDVLILLCAGFPILLFFLLGEPYKRGFFCDDESLKHPF
HDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNGNATSRRYVFMN
YELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQM
ADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAM
VYLALYLQARMTWRGSKLLRHLLQFLFIMVAWYTALSRVSDYKHHWSDVL
AGSLIGSISALVVANYVSDLFQKPNTKPYLARTVQDMNASPAQAITITTN
*

BS05204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
wun-PA 300 CG8804-PA 1..300 1..300 1573 100 Plus
wun-PB 379 CG8804-PB 80..379 1..300 1573 100 Plus
wun-PC 364 CG8804-PC 80..343 1..264 1385 99.6 Plus
wun2-PA 350 CG8805-PA 85..347 5..265 755 52.9 Plus
wun2-PB 246 CG8805-PB 1..243 25..265 716 54.3 Plus