Clone Sequence Records
BS05205.3prime Sequence
820 bp (818 high quality bases) assembled on 2005-12-02
> BS05205.3prime
ATGGTCTAGAAAGCTTCTATCCCTGCTTGTTCGGCGGCTCCTTTAGCCGC
ATGTGCGGCTCCGCGGAAATGGGTTTTGCCACTTTCGTGGGATCGAACTT
GTACGTCTTGACCAGCGGACCCTTGCCGGCCTTGGCGAATCGGATCTCGT
CCAGGCGCTGTCGCTCCTCGATTTCTTTCGAGATCTTCATGTTGTCCCAG
GACTCCTTCATTCCGCCGACGAATCCCTTCTTAGGTGGCAGTGCACTGGG
CGCATGGGTCAGCATCTTTTCGATCTTGAAGTACTCCCTCACGGAGGGAA
TCCTTAGCACCGCAACCTGCCCCAACGATATAAAGTTACTGCACGCCCAA
TAGGTCAAAATGGCAGCGGGGAAGTTCATCGTAAACGGGAAGATAACAAT
GGGCAGGGCTCTGAGCACATATTTCATGGTGTTCATGTTGGCAGCCGATA
AGCGAGCCGAATCCGTTCCGATCTCAATGGTCAGGTACAACGTGGCACTG
GTGATTAAGGGCAGTAGATAGAAGGGATCCGCCATTGTGAGATCCGTGAA
CCAGAAGAGTCCGCCATCCCGCATTGATTCGACCGGCGCGTTAGCCATCT
GTCGCAGTCCCATGAAGAAGCTAATGAAGAGCGGTGCCTGGGCCAAGGGA
ACTACCATGTTCTTGAGCGGATTGACACCCTTCTCCCGCATGAACAGCAT
CATTTCCTGGGCATAACGAGCGGACTCAATGGCGTTTCCCGACTGCCTGG
CCTCGGTCATTTTCAGCTGCAGCATCTGCATCTGCGGCATATTGTTGTTC
ATCTTGGCAGAGTTCCTTTG
BS05205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-PB | 1326 | CG6404-RB | 523..1326 | 820..17 | 4020 | 100 | Minus |
| CG6404-PA | 1326 | CG6404-RA | 523..1326 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1605 | CG6404-RA | 588..1391 | 820..17 | 4020 | 100 | Minus |
| CG6404-RB | 1815 | CG6404-RB | 799..1602 | 820..17 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10884734..10885352 | 202..820 | 3095 | 100 | Plus |
| 3L | 28110227 | 3L | 10884475..10884659 | 17..201 | 925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:15:26 has no hits.
BS05205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:27 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-PB | 523..1326 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:52 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-PA | 523..1326 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:48 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 799..1607 | 12..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:30 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 799..1607 | 12..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:30 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10884470..10884659 | 12..201 | 98 | <- | Plus |
| 3L | 10884734..10885352 | 202..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:48 Download gff for
BS05205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10877570..10877759 | 12..201 | 98 | <- | Plus |
| arm_3L | 10877834..10878452 | 202..820 | 100 | | Plus |
BS05205.5prime Sequence
941 bp (803 high quality bases) assembled on 2005-12-02
> BS05205.5prime
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGGTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAAACGATTC
NGCTCGCTTATCGGCTGCCAACATGAACACCATGAAATATG
BS05205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-PB | 1326 | CG6404-RB | 1..925 | 17..941 | 4531 | 99.5 | Plus |
| CG6404-PA | 1326 | CG6404-RA | 1..925 | 17..941 | 4531 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1605 | CG6404-RA | 66..990 | 17..941 | 4569 | 99.6 | Plus |
| CG6404-RB | 1815 | CG6404-RB | 277..1201 | 17..941 | 4569 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10884950..10885793 | 941..98 | 4164 | 99.5 | Minus |
| 3L | 28110227 | 3L | 10885901..10885985 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:47:25 has no hits.
BS05205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:28 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-PB | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:53 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:49 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1201 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:24 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 277..1201 | 17..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:24 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10884950..10885790 | 101..941 | 99 | <- | Minus |
| 3L | 10885902..10885985 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:49 Download gff for
BS05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10878050..10878890 | 101..941 | 99 | <- | Minus |
| arm_3L | 10879002..10879085 | 17..100 | 100 | | Minus |
BS05205.complete Sequence
1358 bp assembled on 2006-11-01
GenBank Submission: FJ635070
> BS05205.complete
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTC
GGCTCGCTTATCGGCTGCCAACATGAACACCATGAAATATGTGCTCAGAG
CCCTGCCCATTGTTATCTTCCCGTTTACGATGAACTTCCCCGCTGCCATT
TTGACCTATTGGGCGTGCAGTAACTTTATATCGTTGGGGCAGGTTGCGGT
GCTAAGGATTCCCTCCGTGAGGGAGTACTTCAAGATCGAAAAGATGCTGA
CCCATGCGCCCAGTGCACTGCCACCTAAGAAGGGATTCGTCGGCGGAATG
AAGGAGTCCTGGGACAACATGAAGATCTCGAAAGAAATCGAGGAGCGACA
GCGCCTGGACGAGATCCGATTCGCCAAGGCCGGCAAGGGTCCGCTGGTCA
AGACGTACAAGTTCGATCCCACGAAAGTGGCAAAACCCATTTCCGCGGAG
CCGCACATGCGGCTAAAGGAGCCGCCGAACAAGCAGGGATAGAAGCTTTC
TAGACCAT
BS05205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1326 | CG6404-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| CG6404-RB | 1326 | CG6404-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-RA | 1605 | CG6404-RA | 66..1391 | 17..1342 | 6630 | 100 | Plus |
| CG6404-RB | 1815 | CG6404-RB | 277..1602 | 17..1342 | 6630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10884734..10885793 | 1157..98 | 5300 | 100 | Minus |
| 3L | 28110227 | 3L | 10884475..10884659 | 1342..1158 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 10885901..10885985 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:44:41 has no hits.
BS05205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:21 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RA | 1..1326 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:00 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RA | 307..1637 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:24 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 282..1602 | 22..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:21 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RA | 307..1637 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:50 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6404-RB | 282..1602 | 22..1342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:50 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10885902..10885980 | 22..100 | 100 | | Minus |
| 3L | 10884475..10884659 | 1158..1342 | 100 | <- | Minus |
| 3L | 10884734..10885790 | 101..1157 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:24 Download gff for
BS05205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10877575..10877759 | 1158..1342 | 100 | <- | Minus |
| arm_3L | 10877834..10878890 | 101..1157 | 100 | <- | Minus |
| arm_3L | 10879002..10879080 | 22..100 | 100 | | Minus |
BS05205.pep Sequence
Translation from 16 to 1341
> BS05205.pep
MLAHRMQLWRTTNAAMAMTSAAGRFTPQASTGSRRDLYLQRITRGSSLPL
AAPEKWSNLGQLRFASGGATAAGVSATKGEEFMQAVPKTELVDLPDIPAA
PVPPPADGLNVMDVMNAAGEPSFASIGLGGWSPVGMVQNCLEFLHCTWDI
PWWGTIAIGTLAVRTIIFPLVILAQRNSAKMNNNMPQMQMLQLKMTEARQ
SGNAIESARYAQEMMLFMREKGVNPLKNMVVPLAQAPLFISFFMGLRQMA
NAPVESMRDGGLFWFTDLTMADPFYLLPLITSATLYLTIEIGTDSARLSA
ANMNTMKYVLRALPIVIFPFTMNFPAAILTYWACSNFISLGQVAVLRIPS
VREYFKIEKMLTHAPSALPPKKGFVGGMKESWDNMKISKEIEERQRLDEI
RFAKAGKGPLVKTYKFDPTKVAKPISAEPHMRLKEPPNKQG*
BS05205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6404-PA | 441 | CG6404-PA | 1..441 | 1..441 | 2286 | 100 | Plus |
| CG6404-PB | 441 | CG6404-PB | 1..441 | 1..441 | 2286 | 100 | Plus |
| CG4942-PA | 351 | CG4942-PA | 62..320 | 128..362 | 205 | 26.5 | Plus |
