Clone Sequence Records
BS05206.3prime Sequence
911 bp (885 high quality bases) assembled on 2005-12-02
> BS05206.3prime
ATGGTCTAGAAAGCTTTTACATGCCGCCTTCGTTCTTGGAGCGCACGTCG
TCGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTG
CTTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAAT
CACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACC
TGTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTT
CTCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGA
AGGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCC
AACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTC
CTTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAG
CCTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCC
TTGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCC
GAATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGA
GCTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGC
TCGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAG
CAACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGG
TGGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGC
TCGTACTCGCGCAGCGCCCTGTAGTCTTCCGCGGAGGTAACATCGAGCTT
ATGCTTGGTCTTTGGCTTCGGGGGCTCAAACGGGCAGGTGAGAATGGGCA
GCTTGACGTCC
BS05206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 737..1629 | 909..17 | 4415 | 99.7 | Minus |
CG8439-PB | 1539 | Cct5-RB | 647..1539 | 909..17 | 4415 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RB | 1754 | CG8439-RB | 662..1554 | 909..17 | 4435 | 99.8 | Minus |
Cct5-RA | 1948 | CG8439-RA | 856..1748 | 909..17 | 4435 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12176777..12177316 | 556..17 | 2685 | 99.8 | Minus |
2R | 25286936 | 2R | 12176365..12176718 | 909..556 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:05:09 has no hits.
BS05206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:29 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-PA | 734..1629 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:54 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PB | 644..1539 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:54:44 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 853..1748 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:07 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 853..1748 | 17..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:07 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12176362..12176718 | 556..911 | 99 | -> | Minus |
2R | 12176778..12177316 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:54:44 Download gff for
BS05206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8063867..8064223 | 556..911 | 99 | -> | Minus |
arm_2R | 8064283..8064821 | 17..555 | 99 | | Minus |
BS05206.5prime Sequence
942 bp (831 high quality bases) assembled on 2005-11-29
> BS05206.5prime
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTCACCCAGATGGTCAAGCAGGTGAAGGAC
GCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGAT
BS05206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
CG8439-PB | 1539 | Cct5-RB | 18..766 | 124..872 | 3745 | 100 | Plus |
CG8439-PA | 1629 | Cct5-RA | 857..927 | 872..942 | 355 | 100 | Plus |
CG8439-PB | 1539 | Cct5-RB | 767..837 | 872..942 | 355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1948 | CG8439-RA | 119..1046 | 16..942 | 4615 | 99.9 | Plus |
Cct5-RB | 1754 | CG8439-RB | 33..852 | 124..942 | 4075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12175735..12176555 | 123..942 | 4055 | 99.9 | Plus |
2R | 25286936 | 2R | 12174920..12175028 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:49:36 has no hits.
BS05206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:30 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:55 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:48 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..1046 | 16..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:16 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..1046 | 16..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:16 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12174920..12175028 | 16..124 | 100 | -> | Plus |
2R | 12175737..12176555 | 125..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:48 Download gff for
BS05206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8062425..8062533 | 16..124 | 100 | -> | Plus |
arm_2R | 8063242..8064060 | 125..942 | 99 | | Plus |
BS05206.complete Sequence
1661 bp (1661 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635071
> BS05206.complete
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGATGAGGCCA
ACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTGGGTTGGCGGT
CCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCATCGTGCCGCG
TTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGACTCGTTCGCG
AAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCATCGAGGAGTGC
AAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTAACGCCATGAT
CATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGCGTGGTGCGTT
CGCTTGTGAAGGACTCGCGAATTGTTTACGGTGGTGGAGCTGCCGAGATT
AGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGTCCACGCTGGA
GCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGCATTCCGCTGG
CTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTTGTCGGAGCTG
AAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTGTCGACTGCAT
GCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTGGAGTCGCTGC
ACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGTCAAGATGATA
CTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCATGTAAAAGCT
TTCTAGACCAT
BS05206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1629 | CG8439-PA | 1..1629 | 17..1645 | 8130 | 99.9 | Plus |
Cct5-RB | 1539 | CG8439-PB | 18..1539 | 124..1645 | 7595 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1948 | CG8439-RA | 119..1748 | 16..1645 | 8135 | 99.9 | Plus |
Cct5-RB | 1754 | CG8439-RB | 33..1554 | 124..1645 | 7595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12175735..12176718 | 123..1106 | 4920 | 100 | Plus |
2R | 25286936 | 2R | 12176777..12177316 | 1106..1645 | 2685 | 99.8 | Plus |
2R | 25286936 | 2R | 12174920..12175028 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:15:05 has no hits.
BS05206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:18 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 1..1629 | 17..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:24 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 145..1774 | 16..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:36 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 120..1746 | 17..1643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:18 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 145..1774 | 16..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:00 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 120..1746 | 17..1643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:00 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12174921..12175028 | 17..124 | 100 | -> | Plus |
2R | 12175737..12176718 | 125..1106 | 100 | -> | Plus |
2R | 12176778..12177314 | 1107..1643 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:36 Download gff for
BS05206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8062426..8062533 | 17..124 | 100 | -> | Plus |
arm_2R | 8063242..8064223 | 125..1106 | 100 | -> | Plus |
arm_2R | 8064283..8064819 | 1107..1643 | 99 | | Plus |
BS05206.pep Sequence
Translation from 16 to 1644
> BS05206.pep
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGM*
BS05206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-PA | 542 | CG8439-PA | 1..542 | 1..542 | 2717 | 100 | Plus |
Cct5-PB | 512 | CG8439-PB | 7..512 | 37..542 | 2530 | 100 | Plus |
CG5525-PA | 533 | CG5525-PA | 24..528 | 32..534 | 820 | 37.5 | Plus |
CG7033-PA | 535 | CG7033-PA | 7..520 | 16..534 | 707 | 34.4 | Plus |
T-cp1-PA | 557 | CG5374-PA | 14..537 | 28..538 | 674 | 32 | Plus |