Clone BS05206 Report

Search the DGRC for BS05206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCct5-RA
Protein status:BS05206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05206.3prime Sequence

911 bp (885 high quality bases) assembled on 2005-12-02

> BS05206.3prime
ATGGTCTAGAAAGCTTTTACATGCCGCCTTCGTTCTTGGAGCGCACGTCG
TCGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTG
CTTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAAT
CACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACC
TGTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTT
CTCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGA
AGGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCC
AACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTC
CTTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAG
CCTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCC
TTGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCC
GAATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGA
GCTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGC
TCGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAG
CAACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGG
TGGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGC
TCGTACTCGCGCAGCGCCCTGTAGTCTTCCGCGGAGGTAACATCGAGCTT
ATGCTTGGTCTTTGGCTTCGGGGGCTCAAACGGGCAGGTGAGAATGGGCA
GCTTGACGTCC

BS05206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 737..1629 909..17 4415 99.7 Minus
CG8439-PB 1539 Cct5-RB 647..1539 909..17 4415 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RB 1754 CG8439-RB 662..1554 909..17 4435 99.8 Minus
Cct5-RA 1948 CG8439-RA 856..1748 909..17 4435 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12176777..12177316 556..17 2685 99.8 Minus
2R 25286936 2R 12176365..12176718 909..556 1755 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:05:09 has no hits.

BS05206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:29 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-PA 734..1629 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:54 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PB 644..1539 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:54:44 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 853..1748 17..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:07 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 853..1748 17..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:07 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12176362..12176718 556..911 99 -> Minus
2R 12176778..12177316 17..555 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:54:44 Download gff for BS05206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8063867..8064223 556..911 99 -> Minus
arm_2R 8064283..8064821 17..555 99   Minus

BS05206.5prime Sequence

942 bp (831 high quality bases) assembled on 2005-11-29

> BS05206.5prime
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTCACCCAGATGGTCAAGCAGGTGAAGGAC
GCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGAT

BS05206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 1..856 17..872 4280 100 Plus
CG8439-PB 1539 Cct5-RB 18..766 124..872 3745 100 Plus
CG8439-PA 1629 Cct5-RA 857..927 872..942 355 100 Plus
CG8439-PB 1539 Cct5-RB 767..837 872..942 355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1948 CG8439-RA 119..1046 16..942 4615 99.9 Plus
Cct5-RB 1754 CG8439-RB 33..852 124..942 4075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176555 123..942 4055 99.9 Plus
2R 25286936 2R 12174920..12175028 16..124 545 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:49:36 has no hits.

BS05206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:30 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-PA 1..927 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:55 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PA 1..927 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:48 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..1046 16..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:16 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..1046 16..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:16 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12174920..12175028 16..124 100 -> Plus
2R 12175737..12176555 125..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:48 Download gff for BS05206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062425..8062533 16..124 100 -> Plus
arm_2R 8063242..8064060 125..942 99   Plus

BS05206.complete Sequence

1661 bp (1661 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635071

> BS05206.complete
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGATGAGGCCA
ACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTGGGTTGGCGGT
CCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCATCGTGCCGCG
TTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGACTCGTTCGCG
AAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCATCGAGGAGTGC
AAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTAACGCCATGAT
CATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGCGTGGTGCGTT
CGCTTGTGAAGGACTCGCGAATTGTTTACGGTGGTGGAGCTGCCGAGATT
AGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGTCCACGCTGGA
GCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGCATTCCGCTGG
CTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTTGTCGGAGCTG
AAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTGTCGACTGCAT
GCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTGGAGTCGCTGC
ACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGTCAAGATGATA
CTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCATGTAAAAGCT
TTCTAGACCAT

BS05206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1629 CG8439-PA 1..1629 17..1645 8130 99.9 Plus
Cct5-RB 1539 CG8439-PB 18..1539 124..1645 7595 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1948 CG8439-RA 119..1748 16..1645 8135 99.9 Plus
Cct5-RB 1754 CG8439-RB 33..1554 124..1645 7595 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176718 123..1106 4920 100 Plus
2R 25286936 2R 12176777..12177316 1106..1645 2685 99.8 Plus
2R 25286936 2R 12174920..12175028 16..124 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:15:05 has no hits.

BS05206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:18 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 17..1645 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:24 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 145..1774 16..1645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:36 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 120..1746 17..1643 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:18 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 145..1774 16..1645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:00 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 120..1746 17..1643 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:00 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12174921..12175028 17..124 100 -> Plus
2R 12175737..12176718 125..1106 100 -> Plus
2R 12176778..12177314 1107..1643 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:36 Download gff for BS05206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062426..8062533 17..124 100 -> Plus
arm_2R 8063242..8064223 125..1106 100 -> Plus
arm_2R 8064283..8064819 1107..1643 99   Plus

BS05206.pep Sequence

Translation from 16 to 1644

> BS05206.pep
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGM*

BS05206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-PA 542 CG8439-PA 1..542 1..542 2717 100 Plus
Cct5-PB 512 CG8439-PB 7..512 37..542 2530 100 Plus
CG5525-PA 533 CG5525-PA 24..528 32..534 820 37.5 Plus
CG7033-PA 535 CG7033-PA 7..520 16..534 707 34.4 Plus
T-cp1-PA 557 CG5374-PA 14..537 28..538 674 32 Plus