Clone BS05207 Report

Search the DGRC for BS05207

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptTapdelta-RA
Protein status:BS05207.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05207.5prime Sequence

531 bp (530 high quality bases) assembled on 2005-11-29

> BS05207.5prime
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCTAAAAGCTTTCTAGACC

BS05207.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9035-PA 501 Tapdelta-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-RB 977 CG9035-RB 324..824 17..517 2505 100 Plus
Tapdelta-RA 805 CG9035-RA 152..652 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11370453..11370715 517..255 1315 100 Minus
2R 25286936 2R 11370767..11371012 262..17 1230 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:16:00 has no hits.

BS05207.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:32 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9035-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:58 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9035-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:19 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 147..652 12..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:09 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 147..652 12..517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:09 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11370773..11371017 12..256 99   Minus
2R 11370453..11370713 257..517 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:19 Download gff for BS05207.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7257958..7258218 257..517 100 <- Minus
arm_2R 7258278..7258522 12..256 99   Minus

BS05207.3prime Sequence

531 bp (530 high quality bases) assembled on 2005-12-02

> BS05207.3prime
ATGGTCTAGAAAGCTTTTAGGACTGCACCTTGCCCTTGGTGGTGAAGGCG
AAGTATGCGAATCCGCCGACCAAGAAGGCGGCCAAAAGCTCAGCCTTGAT
CCAGGGACCCTTGTAGGCACCCTTGGTGGGCACGGAAATGTCGAGCAGCG
ACTTCACCGATGAAACCTTGTCGCCATCCCGCTGGGCCTTGCGCACATTG
GCATAGCCATCCTCGTCGAAGAGACGCACCTGAACATTGCCGCTGCTGCC
CTGCTTGATATCCTCCACCCAGCTCACCTGGTACTTGTTGTCGCCCACCT
TGGCCACCGGCACCACCTTGCCGCAGGGGAACTCGGCGAACAGGCTGGCG
GGAGCGGCTCCGCTGCACTGCAGCGTGAACTCGCCCACATGGGCCAGCTG
GGTCAGAATCGTGGCATCCTGGGTGCTGAAAGAGCTCACGGTGGCCTTGC
AGCTACCGTAGACGCCGGACGCACAAACGGCGGCAATCAGGCAAATGGCG
AACAGTTGACGGGACATGTCGACTGATAACT

BS05207.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9035-PA 501 Tapdelta-RA 1..501 517..17 2505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-RB 977 CG9035-RB 324..824 517..17 2505 100 Minus
Tapdelta-RA 805 CG9035-RA 152..652 517..17 2505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11370453..11370715 17..279 1315 100 Plus
2R 25286936 2R 11370767..11371012 272..517 1230 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:02 has no hits.

BS05207.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:31 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9035-PA 1..501 17..517 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:56 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9035-PA 1..501 17..517 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:01 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 147..652 17..522 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:18 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 147..652 17..522 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:18 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11370453..11370713 17..277 100 <- Plus
2R 11370773..11371017 278..522 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:01 Download gff for BS05207.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7257958..7258218 17..277 100 <- Plus
arm_2R 7258278..7258522 278..522 99   Plus

BS05207.complete Sequence

533 bp (533 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635072

> BS05207.complete
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCTAAAAGCTTTCTAGACCAT

BS05207.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-RB 501 CG9035-PB 1..501 17..517 2505 100 Plus
Tapdelta-RA 501 CG9035-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-RB 977 CG9035-RB 324..824 17..517 2505 100 Plus
Tapdelta-RA 805 CG9035-RA 152..652 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11370453..11370715 517..255 1315 100 Minus
2R 25286936 2R 11370767..11371012 262..17 1230 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:05:13 has no hits.

BS05207.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:19 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:25 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 154..659 12..517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:00 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 152..650 17..515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:20 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 154..659 12..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:06 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 152..650 17..515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:06 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11370773..11371012 17..256 100   Minus
2R 11370455..11370713 257..515 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:00 Download gff for BS05207.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7257960..7258218 257..515 100 <- Minus
arm_2R 7258278..7258517 17..256 100   Minus

BS05207.pep Sequence

Translation from 16 to 516

> BS05207.pep
MSRQLFAICLIAAVCASGVYGSCKATVSSFSTQDATILTQLAHVGEFTLQ
CSGAAPASLFAEFPCGKVVPVAKVGDNKYQVSWVEDIKQGSSGNVQVRLF
DEDGYANVRKAQRDGDKVSSVKSLLDISVPTKGAYKGPWIKAELLAAFLV
GGFAYFAFTTKGKVQS*

BS05207.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-PB 166 CG9035-PB 1..166 1..166 849 100 Plus
Tapdelta-PA 166 CG9035-PA 1..166 1..166 849 100 Plus