Clone Sequence Records
BS05207.5prime Sequence
531 bp (530 high quality bases) assembled on 2005-11-29
> BS05207.5prime
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCTAAAAGCTTTCTAGACC
BS05207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9035-PA | 501 | Tapdelta-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tapdelta-RB | 977 | CG9035-RB | 324..824 | 17..517 | 2505 | 100 | Plus |
Tapdelta-RA | 805 | CG9035-RA | 152..652 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11370453..11370715 | 517..255 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 11370767..11371012 | 262..17 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:16:00 has no hits.
BS05207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:32 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9035-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:58 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9035-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:19 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 147..652 | 12..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:09 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 147..652 | 12..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:09 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11370773..11371017 | 12..256 | 99 | | Minus |
2R | 11370453..11370713 | 257..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:19 Download gff for
BS05207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7257958..7258218 | 257..517 | 100 | <- | Minus |
arm_2R | 7258278..7258522 | 12..256 | 99 | | Minus |
BS05207.3prime Sequence
531 bp (530 high quality bases) assembled on 2005-12-02
> BS05207.3prime
ATGGTCTAGAAAGCTTTTAGGACTGCACCTTGCCCTTGGTGGTGAAGGCG
AAGTATGCGAATCCGCCGACCAAGAAGGCGGCCAAAAGCTCAGCCTTGAT
CCAGGGACCCTTGTAGGCACCCTTGGTGGGCACGGAAATGTCGAGCAGCG
ACTTCACCGATGAAACCTTGTCGCCATCCCGCTGGGCCTTGCGCACATTG
GCATAGCCATCCTCGTCGAAGAGACGCACCTGAACATTGCCGCTGCTGCC
CTGCTTGATATCCTCCACCCAGCTCACCTGGTACTTGTTGTCGCCCACCT
TGGCCACCGGCACCACCTTGCCGCAGGGGAACTCGGCGAACAGGCTGGCG
GGAGCGGCTCCGCTGCACTGCAGCGTGAACTCGCCCACATGGGCCAGCTG
GGTCAGAATCGTGGCATCCTGGGTGCTGAAAGAGCTCACGGTGGCCTTGC
AGCTACCGTAGACGCCGGACGCACAAACGGCGGCAATCAGGCAAATGGCG
AACAGTTGACGGGACATGTCGACTGATAACT
BS05207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9035-PA | 501 | Tapdelta-RA | 1..501 | 517..17 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tapdelta-RB | 977 | CG9035-RB | 324..824 | 517..17 | 2505 | 100 | Minus |
Tapdelta-RA | 805 | CG9035-RA | 152..652 | 517..17 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11370453..11370715 | 17..279 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 11370767..11371012 | 272..517 | 1230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:02 has no hits.
BS05207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:31 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9035-PA | 1..501 | 17..517 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:30:56 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9035-PA | 1..501 | 17..517 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:01 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 147..652 | 17..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:18 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 147..652 | 17..522 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:18 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11370453..11370713 | 17..277 | 100 | <- | Plus |
2R | 11370773..11371017 | 278..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:01 Download gff for
BS05207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7257958..7258218 | 17..277 | 100 | <- | Plus |
arm_2R | 7258278..7258522 | 278..522 | 99 | | Plus |
BS05207.complete Sequence
533 bp (533 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635072
> BS05207.complete
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCTAAAAGCTTTCTAGACCAT
BS05207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tapdelta-RB | 501 | CG9035-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
Tapdelta-RA | 501 | CG9035-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tapdelta-RB | 977 | CG9035-RB | 324..824 | 17..517 | 2505 | 100 | Plus |
Tapdelta-RA | 805 | CG9035-RA | 152..652 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11370453..11370715 | 517..255 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 11370767..11371012 | 262..17 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:05:13 has no hits.
BS05207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:19 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:25 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 154..659 | 12..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:00 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 152..650 | 17..515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:20 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 154..659 | 12..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:06 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tapdelta-RA | 152..650 | 17..515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:06 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11370773..11371012 | 17..256 | 100 | | Minus |
2R | 11370455..11370713 | 257..515 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:00 Download gff for
BS05207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7257960..7258218 | 257..515 | 100 | <- | Minus |
arm_2R | 7258278..7258517 | 17..256 | 100 | | Minus |
BS05207.pep Sequence
Translation from 16 to 516
> BS05207.pep
MSRQLFAICLIAAVCASGVYGSCKATVSSFSTQDATILTQLAHVGEFTLQ
CSGAAPASLFAEFPCGKVVPVAKVGDNKYQVSWVEDIKQGSSGNVQVRLF
DEDGYANVRKAQRDGDKVSSVKSLLDISVPTKGAYKGPWIKAELLAAFLV
GGFAYFAFTTKGKVQS*
BS05207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tapdelta-PB | 166 | CG9035-PB | 1..166 | 1..166 | 849 | 100 | Plus |
Tapdelta-PA | 166 | CG9035-PA | 1..166 | 1..166 | 849 | 100 | Plus |