Clone Sequence Records
BS05210.3prime Sequence
845 bp (844 high quality bases) assembled on 2005-12-02
> BS05210.3prime
ATGGTCTAGAAAGCTTTTAGACCCAATCCTTGGGGTTCTTCAGGACCTTC
ATCAGTTTGCCCTCCTCGGACTGGGACTTGGGCTCGTGCATGTACTCCCA
GCGGGCGTGCAGGGGCAGGGACATCAGGATGCTCTCGTACCGGGCTCCAG
GCGTGTATAGACCGAACTTGGTGCCACGATCGTAGATCAAATTGAACTCC
ACGTAGCGCCCGCGGCGCAGCAATTGCCACTGTCGTTCGTTGTTGCCATA
CTCCCGATTTTTGTGCTTTCGTACCAGCGGCACGTAGGAGGGAATCACGG
CCCTGGCGCAGCTTGACACAAAGTTGAAGGCCGCCTCCTGGTTGGGCGAA
TCGATGTCGTCGAAAAAGATTCCGCCAATGCCGCGGCTCTCGTTGCGATG
CTTGATGCGGAAGTAGTCGTCGCACCACTTCTTAAAGCGCGGGTAGTAGG
TGGGATCGTGCTCATCGCAGGCGGACTTCAGCGTCTGGTGGAAGTGGGAG
GCGTCCTTCTCGCAGAGGTAATAGGGCGTCAGATCCGTGCCGCCACCAAA
CCACCACTGCTTCTCCCCCTTGGCAGTTTCCACTTCAAAATAACGATAGT
TGAAGTGAATGGTGGGGACATGGGGATTCCTCGGATGGATCACGGCACTC
ACACCGCTGGCAAAGAACGGCAACGAGGCGCCCTCCTTCAGATTCTTGCC
GCGAGCCCGCATCTGTTGTACTGCAGCCGGGGGCAACGAACCGGTGACCA
CGGATATATTGACGCCTGCCTTCTCGAACACATCGCCATCCTGCAGGACG
CAAGTGATGCCGCCTCCGCCCTCAGGCCGCTCCCACCGGTCCACC
BS05210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3433-PA | 1173 | Coprox-RA | 345..1173 | 845..17 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 443..1271 | 845..17 | 4145 | 100 | Minus |
| Coprox-RA | 1392 | CG3433-RA | 443..1271 | 845..17 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964863..6965691 | 845..17 | 4145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:09:43 has no hits.
BS05210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:36 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 345..1173 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:02 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 345..1173 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:50:05 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 443..1274 | 12..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:57:18 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 443..1274 | 12..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:57:18 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964863..6965694 | 12..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:50:05 Download gff for
BS05210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964863..6965694 | 12..845 | 99 | | Minus |
BS05210.5prime Sequence
840 bp (817 high quality bases) assembled on 2005-11-29
> BS05210.5prime
GAAGTTATCAGTCGACATGAACGCACTCCGTCACACGATATCCCTGGTAT
CGCTGGGCACCTTTCAACTGGTGCGCCGGACCAGGGGGCCGCACGCCAGA
GGCTTTCTCCTCGGCACGGGATTGGGCCTGGCCAGCTTTTCGGCGGTCAC
GTACGCACATTCCGCGGAGGCTGTCGACCCAAAGGTCAACGGGGTGCAGA
TGAACACCTCGCGGTTCATGGCCGAGCCCATCACCGACTCCAAGGCACTG
CTGGGGGACAAGGAGAACATGCGTCATCGCATGGAGATCCTGATCATGGA
GATCCAGGCGGAGTTTTGCCGCGCCCTGGAGGCGGAGGAGAACTGTGGCC
AGAAGTTCAAGGTGGACCGGTGGGAGCGGCCTGAGGGCGGAGGCGGCATC
ACTTGCGTCCTGCAGGATGGCGATGTGTTCGAGAAGGCAGGCGTCAATAT
ATCCGTGGTCACCGGTTCGTTGCCCCCGGCTGCAGTACAACAGATGCGGG
CTCGCGGCAAGAATCTGAAGGAGGGCGCCTCGTTGCCGTTCTTTGCCAGC
GGTGTGAGTGCCGTGATCCATCCGAGGAATCCCCATGTCCCCACCATTCA
CTTCAACTATCGTTATTTTGAAGTGGAAACTGCCAAGGGGGAGAAGCAGT
GGTGGTTTGGTGGCGGCACGGATCTGACGCCCTATTACCTCTGCGAGAAG
GACGCCTCCCACTTCCACCAGACGCTGAAGTCCGCCTGCGATGAGCACGA
TCCCACCTACTACCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCA
TCAAGCATCGCAACGAGAGCCGCGGCATTGGCGGAATCTT
BS05210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3433-PA | 1173 | Coprox-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 99..922 | 17..840 | 4120 | 100 | Plus |
| Coprox-RA | 1392 | CG3433-RA | 99..922 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964519..6965342 | 17..840 | 4120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:14:29 has no hits.
BS05210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:36 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:03 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:35 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 95..922 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:44 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 95..922 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:44 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964515..6965342 | 9..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:35 Download gff for
BS05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964515..6965342 | 9..840 | 99 | | Plus |
BS05210.complete Sequence
1205 bp (1205 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635073
> BS05210.complete
GAAGTTATCAGTCGACATGAACGCACTCCGTCACACGATATCCCTGGTAT
CGCTGGGCACCTTTCAACTGGTGCGCCGGACCAGGGGGCCGCACGCCAGA
GGCTTTCTCCTCGGCACGGGATTGGGCCTGGCCAGCTTTTCGGCGGTCAC
GTACGCACATTCCGCGGAGGCTGTCGACCCAAAGGTCAACGGGGTGCAGA
TGAACACCTCGCGGTTCATGGCCGAGCCCATCACCGACTCCAAGGCACTG
CTGGGGGACAAGGAGAACATGCGTCATCGCATGGAGATCCTGATCATGGA
GATCCAGGCGGAGTTTTGCCGCGCCCTGGAGGCGGAGGAGAACTGTGGCC
AGAAGTTCAAGGTGGACCGGTGGGAGCGGCCTGAGGGCGGAGGCGGCATC
ACTTGCGTCCTGCAGGATGGCGATGTGTTCGAGAAGGCAGGCGTCAATAT
ATCCGTGGTCACCGGTTCGTTGCCCCCGGCTGCAGTACAACAGATGCGGG
CTCGCGGCAAGAATCTGAAGGAGGGCGCCTCGTTGCCGTTCTTTGCCAGC
GGTGTGAGTGCCGTGATCCATCCGAGGAATCCCCATGTCCCCACCATTCA
CTTCAACTATCGTTATTTTGAAGTGGAAACTGCCAAGGGGGAGAAGCAGT
GGTGGTTTGGTGGCGGCACGGATCTGACGCCCTATTACCTCTGCGAGAAG
GACGCCTCCCACTTCCACCAGACGCTGAAGTCCGCCTGCGATGAGCACGA
TCCCACCTACTACCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCA
TCAAGCATCGCAACGAGAGCCGCGGCATTGGCGGAATCTTTTTCGACGAC
ATCGATTCGCCCAACCAGGAGGCGGCCTTCAACTTTGTGTCAAGCTGCGC
CAGGGCCGTGATTCCCTCCTACGTGCCGCTGGTACGAAAGCACAAAAATC
GGGAGTATGGCAACAACGAACGACAGTGGCAATTGCTGCGCCGCGGGCGC
TACGTGGAGTTCAATTTGATCTACGATCGTGGCACCAAGTTCGGTCTATA
CACGCCTGGAGCCCGGTACGAGAGCATCCTGATGTCCCTGCCCCTGCACG
CCCGCTGGGAGTACATGCACGAGCCCAAGTCCCAGTCCGAGGAGGGCAAA
CTGATGAAGGTCCTGAAGAACCCCAAGGATTGGGTCTAAAAGCTTTCTAG
ACCAT
BS05210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1173 | CG3433-PB | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| Coprox-RA | 1173 | CG3433-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 99..1271 | 17..1189 | 5865 | 100 | Plus |
| Coprox-RA | 1392 | CG3433-RA | 99..1271 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964519..6965691 | 17..1189 | 5865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:06 has no hits.
BS05210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:03 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:07 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 90..1269 | 9..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:34 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 99..1269 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:03 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 90..1269 | 9..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:54 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 99..1269 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:54 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964519..6965689 | 17..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:34 Download gff for
BS05210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964519..6965689 | 17..1187 | 100 | | Plus |
BS05210.pep Sequence
Translation from 16 to 1188
> BS05210.pep
MNALRHTISLVSLGTFQLVRRTRGPHARGFLLGTGLGLASFSAVTYAHSA
EAVDPKVNGVQMNTSRFMAEPITDSKALLGDKENMRHRMEILIMEIQAEF
CRALEAEENCGQKFKVDRWERPEGGGGITCVLQDGDVFEKAGVNISVVTG
SLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRY
FEVETAKGEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYP
RFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIP
SYVPLVRKHKNREYGNNERQWQLLRRGRYVEFNLIYDRGTKFGLYTPGAR
YESILMSLPLHARWEYMHEPKSQSEEGKLMKVLKNPKDWV*
BS05210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-PB | 390 | CG3433-PB | 1..390 | 1..390 | 2099 | 100 | Plus |
| Coprox-PA | 390 | CG3433-PA | 1..390 | 1..390 | 2099 | 100 | Plus |
