Clone Sequence Records
BS05211.3prime Sequence
384 bp (383 high quality bases) assembled on 2005-12-02
> BS05211.3prime
ATGGTCTAGAAAGCTTCTACAGATCCAGTTGGAACTGTTCCTGGTCCTCA
ATCTTCAGCGACTTGGTCTGCTTGATCAGTTCCGTGGGGACGGGCACGCA
CTTGCGGAAGGGAGTACGCGGAGTTCCCCTCAGCAAGCAACTGGGCACGT
TGGACGGCGGAGTTTGGCTCAATGGGGAGCCACGGAGATTCTTCATGAAA
GCCCGCTCGTAGATAAGTTTGGTGCCTCCAGGAGTGGTGGAGTAGAGGGT
TCCGCCGGGCGTCGAGGAGTACACCTCGGGCATCTGGATCGGATCCGAGA
TGACAACCTTCCTGGTGATCATGGGCAGGGCCTGGGTGATGGCTTGACGG
GCGGTGGGTGAAGCGGACATGTCGACTGATAACT
BS05211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8846-PA | 354 | Thor-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..448 | 370..17 | 1770 | 100 | Minus |
| Thor-RA | 755 | CG8846-RA | 183..536 | 370..17 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479393 | 227..17 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 3478616..3478761 | 370..225 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:10:51 has no hits.
BS05211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:37 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:05 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8846-PA | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:09 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 17..380 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:30 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 17..380 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:30 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478606..3478760 | 226..380 | 97 | -> | Minus |
| 2L | 3479185..3479393 | 17..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:09 Download gff for
BS05211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478606..3478760 | 226..380 | 97 | -> | Minus |
| arm_2L | 3479185..3479393 | 17..225 | 100 | | Minus |
BS05211.5prime Sequence
384 bp (383 high quality bases) assembled on 2005-11-29
> BS05211.5prime
GAAGTTATCAGTCGACATGTCCGCTTCACCCACCGCCCGTCAAGCCATCA
CCCAGGCCCTGCCCATGATCACCAGGAAGGTTGTCATCTCGGATCCGATC
CAGATGCCCGAGGTGTACTCCTCGACGCCCGGCGGAACCCTCTACTCCAC
CACTCCTGGAGGCACCAAACTTATCTACGAGCGGGCTTTCATGAAGAATC
TCCGTGGCTCCCCATTGAGCCAAACTCCGCCGTCCAACGTGCCCAGTTGC
TTGCTGAGGGGAACTCCGCGTACTCCCTTCCGCAAGTGCGTGCCCGTCCC
CACGGAACTGATCAAGCAGACCAAGTCGCTGAAGATTGAGGACCAGGAAC
AGTTCCAACTGGATCTGTAGAAGCTTTCTAGACC
BS05211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8846-PA | 354 | Thor-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..448 | 17..370 | 1770 | 100 | Plus |
| Thor-RA | 755 | CG8846-RA | 183..536 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479393 | 160..370 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 3478616..3478761 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:53:43 has no hits.
BS05211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:38 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:06 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8846-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:33 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 7..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:42 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 7..370 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:42 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478606..3478760 | 7..161 | 97 | -> | Plus |
| 2L | 3479185..3479393 | 162..370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:33 Download gff for
BS05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478606..3478760 | 7..161 | 97 | -> | Plus |
| arm_2L | 3479185..3479393 | 162..370 | 100 | | Plus |
BS05211.complete Sequence
386 bp (386 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635074
> BS05211.complete
GAAGTTATCAGTCGACATGTCCGCTTCACCCACCGCCCGTCAAGCCATCA
CCCAGGCCCTGCCCATGATCACCAGGAAGGTTGTCATCTCGGATCCGATC
CAGATGCCCGAGGTGTACTCCTCGACGCCCGGCGGAACCCTCTACTCCAC
CACTCCTGGAGGCACCAAACTTATCTACGAGCGGGCTTTCATGAAGAATC
TCCGTGGCTCCCCATTGAGCCAAACTCCGCCGTCCAACGTGCCCAGTTGC
TTGCTGAGGGGAACTCCGCGTACTCCCTTCCGCAAGTGCGTGCCCGTCCC
CACGGAACTGATCAAGCAGACCAAGTCGCTGAAGATTGAGGACCAGGAAC
AGTTCCAACTGGATCTGTAGAAGCTTTCTAGACCAT
BS05211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 354 | CG8846-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
| Thor-RA | 354 | CG8846-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..448 | 17..370 | 1770 | 100 | Plus |
| Thor-RA | 755 | CG8846-RA | 183..536 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479393 | 160..370 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 3478616..3478761 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:04:10 has no hits.
BS05211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:04 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:48 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 7..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:43 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 183..536 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:04 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..536 | 7..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:22 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 183..536 | 17..370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:22 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478616..3478760 | 17..161 | 100 | -> | Plus |
| 2L | 3479185..3479393 | 162..370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:43 Download gff for
BS05211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478616..3478760 | 17..161 | 100 | -> | Plus |
| arm_2L | 3479185..3479393 | 162..370 | 100 | | Plus |
BS05211.pep Sequence
Translation from 16 to 369
> BS05211.pep
MSASPTARQAITQALPMITRKVVISDPIQMPEVYSSTPGGTLYSTTPGGT
KLIYERAFMKNLRGSPLSQTPPSNVPSCLLRGTPRTPFRKCVPVPTELIK
QTKSLKIEDQEQFQLDL*
BS05211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-PB | 117 | CG8846-PB | 1..117 | 1..117 | 601 | 100 | Plus |
| Thor-PA | 117 | CG8846-PA | 1..117 | 1..117 | 601 | 100 | Plus |
