Clone BS05215 Report

Search the DGRC for BS05215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptUch-L5-RA
Protein status:BS05215.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05215.3prime Sequence

921 bp (875 high quality bases) assembled on 2005-12-02

> BS05215.3prime
ATGGTCTAGAAAGCTTTTAGTCGGTATCCTTTTTGCGCTGCGCCTGCTCG
CGTTCTAGCGCCCTCTGCTTGGCCTTCTCGTAGATGGGCATTAGTTGTCC
GTTCTCGCCCAGAATTTTTAAGAGCTCCACGATGAAGGGCAAATAGTTGT
GCTTGCGCCGCACATTCTCCACTTTGTAGCGCTTCTTTTTCTGAATCTCG
TACTCTATGTACGTGCGCAAGCTACTGATCTCCGCCTGTCGATCCTCCTC
AGTGTCCATAGCATTGGGCGCCGGATTAAGCAGCTTCTCAATCTGCTGTT
CATAAATGCGCTGCCTGTCCGAGATCAGAGCCATCAGATTGAAGTGGATC
TCGCCGTCGCTGTAGCGCTGCATGCGCTTCTCAATAATCGGACGCACCAC
ATCGATCCAGTTCTGCTCCGACTTGATCTCACCAAGATCAATGGGTCCCT
CCCTCAGGCCGTCCAGCTCGTACAGTCTTCCTCCGATGGGCATATAGCCG
ACAAAGTGGTACACGTCATCGTCCTTCTTCTGGTTCTTAGTGTCCAGCTC
GAAGAGTGTTGGGCGAGCAAAGGAGTTGTGCACCGTGCGAATCTGGCTAG
CGTTGCTCAAAGTTAATCCCTTGTTGTACGGATCGAAGCACTGGCAGAAC
TCCTTAAAATTGGTGAGGGTCTCGCCCAATTTGATGTCCTCATGATCCAG
GTTCATCAGGAGGCTCAAGATCGCCTGGGTGGCGCATGCGTTGTTGATCA
CCTGCTTGGCAAAGAAGATGTTCTCCCGATCCAGGACCACTTTTCCAGCG
GGTTCATCCTCCTGCACCCACTTGAACAGGAAGATCAGACCATGGATGGG
CTCTAGGTTCTTGAAGGACTCGCTGTCGAGACTCCAGATCTCCTCCACCT
GTGCCCCATCGCATCCGAATT

BS05215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3431-PA 975 Uch-L3-RA 71..975 921..17 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-L5-RB 1153 CG3431-RB 189..1093 921..17 4525 100 Minus
Uch-L5-RA 1394 CG3431-RA 189..1093 921..17 4525 100 Minus
Uch-L5R-RA 1298 CG1950-RA 642..835 511..318 295 76.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9475794..9476693 17..916 4500 100 Plus
X 23542271 X 12055801..12055994 318..511 295 76.8 Plus
Blast to na_te.dros performed on 2015-02-10 18:17:35 has no hits.

BS05215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:44 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3431-PA 71..975 17..921 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:14 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3431-PA 71..975 17..921 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 09:59:18 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 189..1100 7..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:33:40 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 189..1100 7..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:33:40 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9475787..9476694 7..921 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 09:59:18 Download gff for BS05215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9468887..9469794 7..921 99   Plus

BS05215.5prime Sequence

903 bp (757 high quality bases) assembled on 2005-11-29

> BS05215.5prime
GAAGTTATCAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTG
AATCCGATCCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGAT
GGGGCACAGGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAA
CCTAGAGCCCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGG
ATGAACCCGCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCC
AAGCAGGTGATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCT
GATGAACCTGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATT
TTAAGGAGTTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTG
AGCAACGCTAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAAC
ACTCTTCGAGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACC
ACTTTGTCGGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGC
CTGAGGGAGGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTG
GATCGATGTGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCG
ACGGCGAGATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGC
ATTTATGAACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTAT
GGACACTGAGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACA
TAGAGTACGAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGG
CGCAAGCACAACTATTTGCCCTTCATCGTGGAGCTCTTAAAAATTCTGGG
CGA

BS05215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3431-PA 975 Uch-L3-RA 1..887 17..903 4435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-L5-RB 1153 CG3431-RB 117..1005 15..903 4445 100 Plus
Uch-L5-RA 1394 CG3431-RA 117..1005 15..903 4445 100 Plus
Uch-L5R-RA 1298 CG1950-RA 642..835 497..690 295 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9475882..9476693 903..92 4060 100 Minus
3L 28110227 3L 9476771..9476849 93..15 395 100 Minus
X 23542271 X 12055801..12055994 690..497 295 76.8 Minus
Blast to na_te.dros performed on 2015-02-12 06:25:55 has no hits.

BS05215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:45 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3431-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:15 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3431-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:32 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 117..1004 15..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:10 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 117..1004 15..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:10 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9476772..9476849 15..92 100   Minus
3L 9475883..9476692 93..902 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:32 Download gff for BS05215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9468983..9469792 93..902 100 <- Minus
arm_3L 9469872..9469949 15..92 100   Minus

BS05215.complete Sequence

1007 bp (1007 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635075

> BS05215.complete
GAAGTTATCAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTG
AATCCGATCCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGAT
GGGGCACAGGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAA
CCTAGAGCCCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGG
ATGAACCCGCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCC
AAGCAGGTGATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCT
GATGAACCTGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATT
TTAAGGAGTTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTG
AGCAACGCTAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAAC
ACTCTTCGAGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACC
ACTTTGTCGGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGC
CTGAGGGAGGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTG
GATCGATGTGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCG
ACGGCGAGATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGC
ATTTATGAACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTAT
GGACACTGAGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACA
TAGAGTACGAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGG
CGCAAGCACAACTATTTGCCCTTCATCGTGGAGCTCTTAAAAATTCTGGG
CGAGAACGGACAACTAATGCCCATCTACGAGAAGGCCAAGCAGAGGGCGC
TAGAACGCGAGCAGGCGCAGCGCAAAAAGGATACCGACTAAAAGCTTTCT
AGACCAT

BS05215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-L5-RB 975 CG3431-PB 1..975 17..991 4875 100 Plus
Uch-L5-RA 975 CG3431-PA 1..975 17..991 4875 100 Plus
Uch-L5R-RA 1023 CG1950-PA 529..722 497..690 295 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-L5-RB 1153 CG3431-RB 117..1093 15..991 4885 100 Plus
Uch-L5-RA 1394 CG3431-RA 117..1093 15..991 4885 100 Plus
Uch-L5R-RA 1298 CG1950-RA 642..835 497..690 295 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9475794..9476693 991..92 4500 100 Minus
3L 28110227 3L 9476771..9476849 93..15 395 100 Minus
X 23542271 X 12055801..12055994 690..497 295 76.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:36:33 has no hits.

BS05215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:06 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-L3-RA 1..975 17..991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:08 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-L3-RA 125..1108 15..1001 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:56 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 119..1091 17..989 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:06 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-L3-RA 125..1108 15..1001 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:52 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-L5-RA 119..1091 17..989 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:52 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9475796..9476692 93..989 100 <- Minus
3L 9476772..9476847 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:56 Download gff for BS05215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9468896..9469792 93..989 100 <- Minus
arm_3L 9469872..9469947 17..92 100   Minus

BS05215.pep Sequence

Translation from 16 to 990

> BS05215.pep
MGDGAGNWCLIESDPGVFTELIREFGCDGAQVEEIWSLDSESFKNLEPIH
GLIFLFKWVQEDEPAGKVVLDRENIFFAKQVINNACATQAILSLLMNLDH
EDIKLGETLTNFKEFCQCFDPYNKGLTLSNASQIRTVHNSFARPTLFELD
TKNQKKDDDVYHFVGYMPIGGRLYELDGLREGPIDLGEIKSEQNWIDVVR
PIIEKRMQRYSDGEIHFNLMALISDRQRIYEQQIEKLLNPAPNAMDTEED
RQAEISSLRTYIEYEIQKKKRYKVENVRRKHNYLPFIVELLKILGENGQL
MPIYEKAKQRALEREQAQRKKDTD*

BS05215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-L5-PB 324 CG3431-PB 1..324 1..324 1701 100 Plus
Uch-L5-PA 324 CG3431-PA 1..324 1..324 1701 100 Plus
Uch-L5R-PA 340 CG1950-PA 22..325 5..311 1048 63.8 Plus
calypso-PA 471 CG8445-PA 39..393 1..300 444 31.9 Plus
calypso-PB 471 CG8445-PB 39..393 1..300 444 31.9 Plus