Clone Sequence Records
BS05215.3prime Sequence
921 bp (875 high quality bases) assembled on 2005-12-02
> BS05215.3prime
ATGGTCTAGAAAGCTTTTAGTCGGTATCCTTTTTGCGCTGCGCCTGCTCG
CGTTCTAGCGCCCTCTGCTTGGCCTTCTCGTAGATGGGCATTAGTTGTCC
GTTCTCGCCCAGAATTTTTAAGAGCTCCACGATGAAGGGCAAATAGTTGT
GCTTGCGCCGCACATTCTCCACTTTGTAGCGCTTCTTTTTCTGAATCTCG
TACTCTATGTACGTGCGCAAGCTACTGATCTCCGCCTGTCGATCCTCCTC
AGTGTCCATAGCATTGGGCGCCGGATTAAGCAGCTTCTCAATCTGCTGTT
CATAAATGCGCTGCCTGTCCGAGATCAGAGCCATCAGATTGAAGTGGATC
TCGCCGTCGCTGTAGCGCTGCATGCGCTTCTCAATAATCGGACGCACCAC
ATCGATCCAGTTCTGCTCCGACTTGATCTCACCAAGATCAATGGGTCCCT
CCCTCAGGCCGTCCAGCTCGTACAGTCTTCCTCCGATGGGCATATAGCCG
ACAAAGTGGTACACGTCATCGTCCTTCTTCTGGTTCTTAGTGTCCAGCTC
GAAGAGTGTTGGGCGAGCAAAGGAGTTGTGCACCGTGCGAATCTGGCTAG
CGTTGCTCAAAGTTAATCCCTTGTTGTACGGATCGAAGCACTGGCAGAAC
TCCTTAAAATTGGTGAGGGTCTCGCCCAATTTGATGTCCTCATGATCCAG
GTTCATCAGGAGGCTCAAGATCGCCTGGGTGGCGCATGCGTTGTTGATCA
CCTGCTTGGCAAAGAAGATGTTCTCCCGATCCAGGACCACTTTTCCAGCG
GGTTCATCCTCCTGCACCCACTTGAACAGGAAGATCAGACCATGGATGGG
CTCTAGGTTCTTGAAGGACTCGCTGTCGAGACTCCAGATCTCCTCCACCT
GTGCCCCATCGCATCCGAATT
BS05215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3431-PA | 975 | Uch-L3-RA | 71..975 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-L5-RB | 1153 | CG3431-RB | 189..1093 | 921..17 | 4525 | 100 | Minus |
Uch-L5-RA | 1394 | CG3431-RA | 189..1093 | 921..17 | 4525 | 100 | Minus |
Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 511..318 | 295 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9475794..9476693 | 17..916 | 4500 | 100 | Plus |
X | 23542271 | X | 12055801..12055994 | 318..511 | 295 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:17:35 has no hits.
BS05215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:44 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3431-PA | 71..975 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:14 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3431-PA | 71..975 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 09:59:18 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 189..1100 | 7..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:33:40 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 189..1100 | 7..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:33:40 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9475787..9476694 | 7..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 09:59:18 Download gff for
BS05215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9468887..9469794 | 7..921 | 99 | | Plus |
BS05215.5prime Sequence
903 bp (757 high quality bases) assembled on 2005-11-29
> BS05215.5prime
GAAGTTATCAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTG
AATCCGATCCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGAT
GGGGCACAGGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAA
CCTAGAGCCCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGG
ATGAACCCGCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCC
AAGCAGGTGATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCT
GATGAACCTGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATT
TTAAGGAGTTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTG
AGCAACGCTAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAAC
ACTCTTCGAGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACC
ACTTTGTCGGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGC
CTGAGGGAGGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTG
GATCGATGTGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCG
ACGGCGAGATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGC
ATTTATGAACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTAT
GGACACTGAGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACA
TAGAGTACGAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGG
CGCAAGCACAACTATTTGCCCTTCATCGTGGAGCTCTTAAAAATTCTGGG
CGA
BS05215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3431-PA | 975 | Uch-L3-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-L5-RB | 1153 | CG3431-RB | 117..1005 | 15..903 | 4445 | 100 | Plus |
Uch-L5-RA | 1394 | CG3431-RA | 117..1005 | 15..903 | 4445 | 100 | Plus |
Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 497..690 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9475882..9476693 | 903..92 | 4060 | 100 | Minus |
3L | 28110227 | 3L | 9476771..9476849 | 93..15 | 395 | 100 | Minus |
X | 23542271 | X | 12055801..12055994 | 690..497 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:25:55 has no hits.
BS05215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:45 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3431-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:15 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3431-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:36:32 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 117..1004 | 15..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:10 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 117..1004 | 15..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:10 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9476772..9476849 | 15..92 | 100 | | Minus |
3L | 9475883..9476692 | 93..902 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:36:32 Download gff for
BS05215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9468983..9469792 | 93..902 | 100 | <- | Minus |
arm_3L | 9469872..9469949 | 15..92 | 100 | | Minus |
BS05215.complete Sequence
1007 bp (1007 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635075
> BS05215.complete
GAAGTTATCAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTG
AATCCGATCCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGAT
GGGGCACAGGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAA
CCTAGAGCCCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGG
ATGAACCCGCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCC
AAGCAGGTGATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCT
GATGAACCTGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATT
TTAAGGAGTTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTG
AGCAACGCTAGCCAGATTCGCACGGTGCACAACTCCTTTGCTCGCCCAAC
ACTCTTCGAGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACC
ACTTTGTCGGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGC
CTGAGGGAGGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTG
GATCGATGTGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCG
ACGGCGAGATCCACTTCAATCTGATGGCTCTGATCTCGGACAGGCAGCGC
ATTTATGAACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTAT
GGACACTGAGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACA
TAGAGTACGAGATTCAGAAAAAGAAGCGCTACAAAGTGGAGAATGTGCGG
CGCAAGCACAACTATTTGCCCTTCATCGTGGAGCTCTTAAAAATTCTGGG
CGAGAACGGACAACTAATGCCCATCTACGAGAAGGCCAAGCAGAGGGCGC
TAGAACGCGAGCAGGCGCAGCGCAAAAAGGATACCGACTAAAAGCTTTCT
AGACCAT
BS05215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-L5-RB | 975 | CG3431-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
Uch-L5-RA | 975 | CG3431-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Uch-L5R-RA | 1023 | CG1950-PA | 529..722 | 497..690 | 295 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-L5-RB | 1153 | CG3431-RB | 117..1093 | 15..991 | 4885 | 100 | Plus |
Uch-L5-RA | 1394 | CG3431-RA | 117..1093 | 15..991 | 4885 | 100 | Plus |
Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 497..690 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9475794..9476693 | 991..92 | 4500 | 100 | Minus |
3L | 28110227 | 3L | 9476771..9476849 | 93..15 | 395 | 100 | Minus |
X | 23542271 | X | 12055801..12055994 | 690..497 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:33 has no hits.
BS05215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:06 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L3-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:08 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L3-RA | 125..1108 | 15..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:56 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 119..1091 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:06 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L3-RA | 125..1108 | 15..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:52 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-L5-RA | 119..1091 | 17..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:52 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9475796..9476692 | 93..989 | 100 | <- | Minus |
3L | 9476772..9476847 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:56 Download gff for
BS05215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9468896..9469792 | 93..989 | 100 | <- | Minus |
arm_3L | 9469872..9469947 | 17..92 | 100 | | Minus |
BS05215.pep Sequence
Translation from 16 to 990
> BS05215.pep
MGDGAGNWCLIESDPGVFTELIREFGCDGAQVEEIWSLDSESFKNLEPIH
GLIFLFKWVQEDEPAGKVVLDRENIFFAKQVINNACATQAILSLLMNLDH
EDIKLGETLTNFKEFCQCFDPYNKGLTLSNASQIRTVHNSFARPTLFELD
TKNQKKDDDVYHFVGYMPIGGRLYELDGLREGPIDLGEIKSEQNWIDVVR
PIIEKRMQRYSDGEIHFNLMALISDRQRIYEQQIEKLLNPAPNAMDTEED
RQAEISSLRTYIEYEIQKKKRYKVENVRRKHNYLPFIVELLKILGENGQL
MPIYEKAKQRALEREQAQRKKDTD*
BS05215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-L5-PB | 324 | CG3431-PB | 1..324 | 1..324 | 1701 | 100 | Plus |
Uch-L5-PA | 324 | CG3431-PA | 1..324 | 1..324 | 1701 | 100 | Plus |
Uch-L5R-PA | 340 | CG1950-PA | 22..325 | 5..311 | 1048 | 63.8 | Plus |
calypso-PA | 471 | CG8445-PA | 39..393 | 1..300 | 444 | 31.9 | Plus |
calypso-PB | 471 | CG8445-PB | 39..393 | 1..300 | 444 | 31.9 | Plus |