Clone Sequence Records
BS05216.complete Sequence
2567 bp assembled on 2009-12-07
GenBank Submission: KX793754
> BS05216.complete
GAAGTTATCAGTCGACATGTCGAAGCCCCAATCCGACGCCGATCGGCGCA
AACAGATCTCGGTGCGCGGGATCGCCGAGGTGGGCAATGTCACCGAAGTG
AAGAAGAACTTCAATCGCCACCTGCACTACACCCTGGTCAAGGATCGCAA
TGTGTCCACCCTGAGGGACTACTACTTCGCCCTGGCCAACACCGTCAAGG
ACAACATGGTGGGCCGCTGGATTCGCACGCAGCAGCACTACTACGAGAAG
GATCCCAAGCGCGTCTACTATCTGTCGCTGGAGTACTACATGGGTCGCTC
ACTGACCAACACCATGATCAACCTGGGAATCCAGAGCGAGTGCGAGGAGG
CCATGTACCAGTTGGGTCTGGATATCGAGAACCTGGAGGAGATGGAGGAG
GACGCCGGTCTGGGCAATGGTGGTCTGGGTCGTTTGGCCGCCTGTTTCCT
CGACTCGATGGCCACTCTGGGTCTGGCCGCCTATGGCTATGGCATCCGTT
ATGAGTACGGTATCTTCGCCCAGAAGATCAAGAACGGCGAGCAGGTGGAG
GAGCCCGATGATTGGCTGCGTTATGGCAATCCCTGGGAGAAGGCTCGTCC
GGAGTTCATGCTGCCGGTCAACTTCTACGGCCGTGTGATCGACACGCCCG
AGGGCAAGAAGTGGGTGGACACCCAAAGGGTGTTTGCCATGCCCTACGAC
AACCCCATTCCCGGATACAACAACAACCACGTAAACACGCTGCGTCTGTG
GTCCGCCAAGTCGCCCATCGACTTCAACCTCAAGTTCTTCAACGATGGTG
ACTACATCCAGGCCGTGCTGGACCGCAATCTGGCTGAGAACATCTCACGT
GTCCTGTACCCCAACGACAACTTCTTCGAGGGCAAGGAGCTGCGTCTGAA
GCAGGAATACTTCATGTGCGCCGCCACGCTGCAGGATATCATCCGCCGCT
ACAAGGCCTCGAAGTTCGGATCCCGGGAGGCGGTCCGCAACACCTTCGAT
CACTTCCCCGACAAGGTGGCCATTCAGCTGAACGATACCCATCCATCGCT
GGCCATCCCTGAGCTGATGCGCATCCTGGTCGATGAGGAGCATCTGACCT
GGGAGAAGGCATGGGACATCACCGTCAGGAGTTGCGCGTACACCAACCAC
ACCGTGCTCCCAGAGGCCCTGGAGCGCTGGCCCGTCTCCCTGCTGGAGTC
GATCCTGCCCCGCCATCTGCAAATCATCTATCACATCAACTTCCTGCACA
TGGAGAATGTGAAGAAGAAGTTCCCCGACGATTTGGACCGCATGCGCCGC
ATGTCGATGGTGGAGGAGGATGGCGAGAAGCGCATCAACATGGCTCATCT
GTCCATCGTCGGCTCCCACGCCGTCAACGGTGTGGCCGCCATCCACTCGC
AGATCCTAAAGGACTCGCTGTTCCATGACTTCTACGAAATGGAGCCCCAG
AAGTTCCAGAACAAGACGAACGGTATTACCCCGCGTCGTTGGTTGCTGCT
CTGCAATCCCGGACTCTCCGACCTGATCGCCGAGAAGATCGGCGACGAGT
GGCCAGTGCATCTGGACCAACTGGTTGCTCTGAAGAAGTGGGCAAAGGAC
CCCAACTTCCAGCGCAATGTAGCCCGCGTCAAGCAGGAGAACAAGCTGAA
GCTGGCCGCCATTCTGGAGAAGGACTACGGCGTTAAGATCAACCCCTCTT
CCATGTTCGACATTCAGGTGAAACGTATTCACGAGTACAAGCGCCAGCTG
CTGAACTGCCTGCACATCATCACCCTGTACAACAGGATCAAGAAGGATCC
CACAGCCAACTTCACCCCGAGGACAATCATGATCGGAGGCAAGGCTGCTC
CGGGCTACTATGTGGCCAAGCAGATCATCAAGCTCATCTGCGCCGTGGGC
AACGTTGTGAACAACGATCCCATTGTGGGCGATAAGCTCAAGGTTATCTT
CCTGGAGAACTACCGTGTCACCCTGGCCGAGAAGATTATGCCCGCCGCCG
ATCTGTCCGAGCAGATCTCGACCGCCGGCACAGAGGCCTCTGGTACCGGC
AACATGAAGTTCCAGCTTAACGGCGCCCTCACCATCGGCACCCTGGACGG
TGCCAACGTTGAGATGGCCGAGGAGATGGGTCTGGACAACATCTTTATCT
TCGGCATGACCGTCGACGAGGTGGAGGCGCTCAAGAAGAAGGGCTACAAT
GCCTACGACTACTACAACGCCAACCCCGAGGTCAAGCAGGTGATTGACCA
AATCCAGGGCGGATTCTTCAGCCCCGGCAATCCCAACGAGTTCAAGAACA
TTGCCGACATTCTGCTTAAGTACGACCACTACTACTTGCTGGCCGACTAC
GATGCGTACATCAAGGCCCAGGATCTGGTCTCCAAGACCTACCAGAACCA
AGCCAAGTGGCTGGAGATGTCCATCAACAACATTGCGTCCAGCGGCAAAT
TCTCGTCGGATCGCACCATCGCCGAGTACGCCCGCGAGATTTGGGGAGTG
GAGCCCACCTGGGAGAAGCTGCCAGCGCCGGAGGATCAGCCACAGAACTA
AAAGCTTTCTAGACCAT
BS05216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2535 | CG7254-PB | 1..2535 | 17..2551 | 12675 | 100 | Plus |
| GlyP-RA | 2535 | CG7254-PA | 1..2535 | 17..2551 | 12675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 199..2735 | 16..2552 | 12685 | 100 | Plus |
| GlyP-RA | 3144 | CG7254-RA | 199..2735 | 16..2552 | 12685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2135038..2136644 | 789..2395 | 8035 | 100 | Plus |
| 2L | 23513712 | 2L | 2134437..2134967 | 258..788 | 2655 | 100 | Plus |
| 2L | 23513712 | 2L | 2131011..2131254 | 16..259 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 2136728..2136887 | 2393..2552 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:12 has no hits.
BS05216.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:57 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RB | 198..2730 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:11 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 200..2732 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:23 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RB | 198..2730 | 17..2549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:32 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 200..2732 | 17..2549 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:32 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2131012..2131254 | 17..259 | 100 | -> | Plus |
| 2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| 2L | 2135038..2136644 | 789..2395 | 100 | -> | Plus |
| 2L | 2136731..2136884 | 2396..2549 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:11 Download gff for
BS05216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2131012..2131254 | 17..259 | 100 | -> | Plus |
| arm_2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| arm_2L | 2135038..2136644 | 789..2395 | 100 | -> | Plus |
| arm_2L | 2136731..2136884 | 2396..2549 | 100 | | Plus |
BS05216.3prime Sequence
857 bp (855 high quality bases) assembled on 2005-12-02
> BS05216.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGTGGCTGATCCTCCGGCGCTGGCAGC
TTCTCCCAGGTGGGCTCCACTCCCCAAATCTCGCGGGCGTACTCGGCGAT
GGTGCGATCCGACGAGAATTTGCCGCTGGACGCAATGTTGTTGATGGACA
TCTCCAGCCACTTGGCTTGGTTCTGGTAGGTCTTGGAGACCAGATCCTGG
GCCTTGATGTACGCATCGTAGTCGGCCAGCAAGTAGTAGTGGTCGTACTT
AAGCAGAATGTCGGCAATGTTCTTGAACTCGTTGGGATTGCCGGGGCTGA
AGAATCCGCCCTGGATTTGGTCAATCACCTGCTTGACCTCGGGGTTGGCG
TTGTAGTAGTCGTAGGCATTGTAGCCCTTCTTCTTGAGCGCCTCCACCTC
GTCGACGGTCATGCCGAAGATAAAGATGTTGTCCAGACCCATCTCCTCGG
CCATCTCAACGTTGGCACCGTCCAGGGTGCCGATGGTGAGGGCGCCGTTA
AGCTGGAACTTCATGTTGCCGGTACCAGAGGCCTCTGTGCCGGCGGTCGA
GATCTGCTCGGACAGATCGGCGGCGGGCATAATCTTCTCGGCCAGGGTGA
CACGGTAGTTCTCCAGGAAGATAACCTTGAGCTTATCGCCCACAATGGGA
TCGTTGTTCACAACGTTGCCCACGGCGCAGATGAGCTTGATGATCTGCTT
GGCCACATAGTAGCCCGGAGCAGCCTTGCCTCCGATCATGATTGTCCTCG
GGGTGAAGTTGGCTGTGGGATCCTTCTTGATCCTGTTGTACAGGGTGATG
ATGTGCAGGCAGTTCAGCAGCTGGCGCTTGTACTCGTGAATACGTTTCAC
CTGAATG
BS05216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7254-PA | 2535 | GlyP-RA | 1695..2535 | 857..17 | 4205 | 100 | Minus |
| CG7254-PB | 2535 | GlyP-RB | 1695..2535 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 1894..2735 | 857..16 | 4210 | 100 | Minus |
| GlyP-RA | 3144 | CG7254-RA | 1894..2735 | 857..16 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2135960..2136644 | 857..173 | 3425 | 100 | Minus |
| 2L | 23513712 | 2L | 2136728..2136887 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:10:32 has no hits.
BS05216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:46 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1695..2535 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:17 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1695..2535 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:07 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 1894..2735 | 16..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:53 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 1894..2735 | 16..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:53 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2135960..2136644 | 173..857 | 100 | -> | Minus |
| 2L | 2136731..2136887 | 16..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:07 Download gff for
BS05216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2135960..2136644 | 173..857 | 100 | -> | Minus |
| arm_2L | 2136731..2136887 | 16..172 | 100 | | Minus |
BS05216.5prime Sequence
873 bp (835 high quality bases) assembled on 2005-12-02
> BS05216.5prime
GAAGTTATCAGTCGACATGTCGAAGCCCCAATCCGACGCCGATCGGCGCA
AACAGATCTCGGTGCGCGGGATCGCCGAGGTGGGCAATGTCACCGAAGTG
AAGAAGAACTTCAATCGCCACCTGCACTACACCCTGGTCAAGGATCGCAA
TGTGTCCACCCTGAGGGACTACTACTTCGCCCTGGCCAACACCGTCAAGG
ACAACATGGTGGGCCGCTGGATTCGCACGCAGCAGCACTACTACGAGAAG
GATCCCAAGCGCGTCTACTATCTGTCGCTGGAGTACTACATGGGTCGCTC
ACTGACCAACACCATGATCAACCTGGGAATCCAGAGCGAGTGCGAGGAGG
CCATGTACCAGTTGGGTCTGGATATCGAGAACCTGGAGGAGATGGAGGAG
GACGCCGGTCTGGGCAATGGTGGTCTGGGTCGTTTGGCCGCCTGTTTCCT
CGACTCGATGGCCACTCTGGGTCTGGCCGCCTATGGCTATGGCATCCGTT
ATGAGTACGGTATCTTCGCCCAGAAGATCAAGAACGGCGAGCAGGTGGAG
GAGCCCGATGATTGGCTGCGTTATGGCAATCCCTGGGAGAAGGCTCGTCC
GGAGTTCATGCTGCCGGTCAACTTCTACGGCCGTGTGATCGACACGCCCG
AGGGCAAGAAGTGGGTGGACACCCAAAGGGTGTTTGCCATGCCCTACGAC
AACCCCATTCCCGGATACAACAACAACCACGTAAACACGCTGCGTCTGTG
GTCCGCCAAGTCGCCCATCGACTTCAACCTCAAGTTCTTCAACGATGGTG
ACTACATCCAGGCCGTGCTGGACCGCAATCTGGCTGAGAACATCTCACGT
GTCCTGTACCCCAACGACAACTT
BS05216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7254-PA | 2535 | GlyP-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG7254-PB | 2535 | GlyP-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 199..1056 | 16..873 | 4290 | 100 | Plus |
| GlyP-RA | 3144 | CG7254-RA | 199..1056 | 16..873 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2134437..2134967 | 258..788 | 2655 | 100 | Plus |
| 2L | 23513712 | 2L | 2131011..2131254 | 16..259 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 2135038..2135122 | 789..873 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:58:00 has no hits.
BS05216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:47 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:18 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:17 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 199..1056 | 16..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:13 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 199..1056 | 16..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:13 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2131011..2131254 | 16..259 | 100 | -> | Plus |
| 2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| 2L | 2135038..2135122 | 789..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:17 Download gff for
BS05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2131011..2131254 | 16..259 | 100 | -> | Plus |
| arm_2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| arm_2L | 2135038..2135122 | 789..873 | 100 | | Plus |
BS05216.pep Sequence
Translation from 16 to 2550
> BS05216.pep
MSKPQSDADRRKQISVRGIAEVGNVTEVKKNFNRHLHYTLVKDRNVSTLR
DYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTM
INLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMAT
LGLAAYGYGIRYEYGIFAQKIKNGEQVEEPDDWLRYGNPWEKARPEFMLP
VNFYGRVIDTPEGKKWVDTQRVFAMPYDNPIPGYNNNHVNTLRLWSAKSP
IDFNLKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFM
CAATLQDIIRRYKASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPEL
MRILVDEEHLTWEKAWDITVRSCAYTNHTVLPEALERWPVSLLESILPRH
LQIIYHINFLHMENVKKKFPDDLDRMRRMSMVEEDGEKRINMAHLSIVGS
HAVNGVAAIHSQILKDSLFHDFYEMEPQKFQNKTNGITPRRWLLLCNPGL
SDLIAEKIGDEWPVHLDQLVALKKWAKDPNFQRNVARVKQENKLKLAAIL
EKDYGVKINPSSMFDIQVKRIHEYKRQLLNCLHIITLYNRIKKDPTANFT
PRTIMIGGKAAPGYYVAKQIIKLICAVGNVVNNDPIVGDKLKVIFLENYR
VTLAEKIMPAADLSEQISTAGTEASGTGNMKFQLNGALTIGTLDGANVEM
AEEMGLDNIFIFGMTVDEVEALKKKGYNAYDYYNANPEVKQVIDQIQGGF
FSPGNPNEFKNIADILLKYDHYYLLADYDAYIKAQDLVSKTYQNQAKWLE
MSINNIASSGKFSSDRTIAEYAREIWGVEPTWEKLPAPEDQPQN*
BS05216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-PB | 844 | CG7254-PB | 1..844 | 1..844 | 4461 | 100 | Plus |
| GlyP-PA | 844 | CG7254-PA | 1..844 | 1..844 | 4461 | 100 | Plus |
