Clone BS05219 Report

Search the DGRC for BS05219

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptRef1-RA
Protein status:BS05219.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05219.3prime Sequence

831 bp (830 high quality bases) assembled on 2005-12-02

> BS05219.3prime
ATGGTCTAGAAAGCTTTTAGATCTTCATGTCGTTGATGTATGAGTCCAGT
TCGGCGTCCAGCTCCTCAGCAGTGGGCGGGGCCTTGCGCTCCCGTCGCTG
GCCGCCTGCCGCCGGCTTGCCACCGACCGGACGTTTGAAGCCGCGACGCG
CCGTGCCACCAGCTTGGCCACCACCACGCTTGAATGAAGTTGGTGCAGTA
CCACCCACGCGACGCTTGACATCGGTGGCGGCTACGGGACGGGTCAACAC
GGCCACGTCTGAGACGGCCAGCTGAATGGTCATAGGGCGTCCGTCCAAAG
GTACGCCATGGTACTGTTTAATGGCCTTCAAGGCGTCGGCGCGACGTTCG
AAAATCACGTCAGCGGTGCCCAACGAGCGACCGGAGCGATCGTAGTGCAC
TGCCGCCTTCTTTATCGGACCAAAGTCGTTGAAGAGCTCCTTGATGTCCG
TGTTGGATACGCCGTAGTCCAGGTTACCGACGATGAGGCGGGTGGGTCCA
GATCCTCCACCGACGGCACCCCTCTTCGGTCCGTCGTACATATCGTGCTT
CCAAGCGCTGTTCACATCGCCCCGTGGGAACTTGGCCTTCTGAACGGCTC
CGGCGGCCACTCCTCCTCGCGGGCCCTTGAGCACGCTTCCTGGCTTCCTG
GGCGAGCCGCCGGCATTGGCTCCGCCGCGGCGGGCTCCACCAGCAAAACG
CTGCTGTCCGCCCGTTTTTCGGGCGCCACCTGGTCCGCCGCGGGCGGCTT
GCGGCTTTTTTTGCGAGCGTGTGGACTTAATGATGTCGTCGAGGCTCATT
TCAATTTTGTCCACCATGTCGACTGATAACT

BS05219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1101-PA 801 Aly-RA 1..801 817..17 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-RA 1328 CG1101-RA 179..980 817..16 4010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7079963..7080209 571..817 1235 100 Plus
3R 32079331 3R 7079253..7079456 369..572 1020 100 Plus
3R 32079331 3R 7078819..7079020 169..370 1010 100 Plus
3R 32079331 3R 7078252..7078408 16..172 785 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:26:03 has no hits.

BS05219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:49 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
Aly-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:21 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1101-PA 1..801 17..817 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:04:45 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 170..980 16..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:12 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 170..980 16..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:12 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7078252..7078407 16..171 100 <- Plus
3R 7078822..7079019 172..369 100 <- Plus
3R 7079254..7079455 370..571 100 <- Plus
3R 7079964..7080218 572..827 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:04:45 Download gff for BS05219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2903974..2904129 16..171 100 <- Plus
arm_3R 2904544..2904741 172..369 100 <- Plus
arm_3R 2904976..2905177 370..571 100 <- Plus
arm_3R 2905686..2905940 572..827 98   Plus

BS05219.5prime Sequence

831 bp (819 high quality bases) assembled on 2005-11-29

> BS05219.5prime
GAAGTTATCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACA
TCATTAAGTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGA
CCAGGTGGCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGC
CCGCCGCGGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCG
TGCTCAAGGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCC
AAGTTCCCACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGA
CGGACCGAAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCA
TCGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTC
TTCAACGACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTC
CGGTCGCTCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACG
CCTTGAAGGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCT
ATGACCATTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGT
AGCCGCCACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCAT
TCAAGCGTGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAA
CGTCCGGTCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAA
GGCCCCGCCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCA
ACGACATGAAGATCTAAAAGCTTTCTAGACC

BS05219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1101-PA 801 Aly-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-RA 1328 CG1101-RA 179..980 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7079963..7080209 263..17 1235 100 Minus
3R 32079331 3R 7079253..7079456 465..262 1020 100 Minus
3R 32079331 3R 7078819..7079020 665..464 1010 100 Minus
3R 32079331 3R 7078252..7078408 818..662 785 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:55:00 has no hits.

BS05219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:51 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
Aly-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:22 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1101-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:25 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 170..980 7..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:38 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 170..980 7..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:38 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7079254..7079455 263..464 100 <- Minus
3R 7079964..7080218 7..262 98   Minus
3R 7078822..7079019 465..662 100 <- Minus
3R 7078252..7078407 663..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:25 Download gff for BS05219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2903974..2904129 663..818 100 <- Minus
arm_3R 2904544..2904741 465..662 100 <- Minus
arm_3R 2904976..2905177 263..464 100 <- Minus
arm_3R 2905686..2905940 7..262 98   Minus

BS05219.complete Sequence

833 bp (833 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635076

> BS05219.complete
GAAGTTATCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACA
TCATTAAGTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGA
CCAGGTGGCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGC
CCGCCGCGGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCG
TGCTCAAGGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCC
AAGTTCCCACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGA
CGGACCGAAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCA
TCGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTC
TTCAACGACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTC
CGGTCGCTCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACG
CCTTGAAGGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCT
ATGACCATTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGT
AGCCGCCACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCAT
TCAAGCGTGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAA
CGTCCGGTCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAA
GGCCCCGCCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCA
ACGACATGAAGATCTAAAAGCTTTCTAGACCAT

BS05219.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-RA 801 CG1101-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-RA 1328 CG1101-RA 179..980 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7079963..7080209 263..17 1235 100 Minus
3R 32079331 3R 7079253..7079456 465..262 1020 100 Minus
3R 32079331 3R 7078819..7079020 665..464 1010 100 Minus
3R 32079331 3R 7078252..7078408 818..662 785 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:47:03 has no hits.

BS05219.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:07 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:10 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 187..997 7..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:04 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 179..977 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:07 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 187..997 7..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:14 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 179..977 17..815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:14 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7079964..7080209 17..262 100   Minus
3R 7078255..7078407 663..815 100 <- Minus
3R 7078822..7079019 465..662 100 <- Minus
3R 7079254..7079455 263..464 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:04 Download gff for BS05219.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2903977..2904129 663..815 100 <- Minus
arm_3R 2904544..2904741 465..662 100 <- Minus
arm_3R 2904976..2905177 263..464 100 <- Minus
arm_3R 2905686..2905931 17..262 100   Minus

BS05219.pep Sequence

Translation from 16 to 816

> BS05219.pep
MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA
NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG
AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG
TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV
KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA
EELDAELDSYINDMKI*

BS05219.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-PA 266 CG1101-PA 1..266 1..266 1378 100 Plus
Ref2-PC 220 CG17031-PC 1..192 1..229 253 34.8 Plus
Ref2-PB 220 CG17031-PB 1..192 1..229 253 34.8 Plus
Ref2-PA 220 CG17031-PA 1..192 1..229 253 34.8 Plus