Clone Sequence Records
BS05219.3prime Sequence
831 bp (830 high quality bases) assembled on 2005-12-02
> BS05219.3prime
ATGGTCTAGAAAGCTTTTAGATCTTCATGTCGTTGATGTATGAGTCCAGT
TCGGCGTCCAGCTCCTCAGCAGTGGGCGGGGCCTTGCGCTCCCGTCGCTG
GCCGCCTGCCGCCGGCTTGCCACCGACCGGACGTTTGAAGCCGCGACGCG
CCGTGCCACCAGCTTGGCCACCACCACGCTTGAATGAAGTTGGTGCAGTA
CCACCCACGCGACGCTTGACATCGGTGGCGGCTACGGGACGGGTCAACAC
GGCCACGTCTGAGACGGCCAGCTGAATGGTCATAGGGCGTCCGTCCAAAG
GTACGCCATGGTACTGTTTAATGGCCTTCAAGGCGTCGGCGCGACGTTCG
AAAATCACGTCAGCGGTGCCCAACGAGCGACCGGAGCGATCGTAGTGCAC
TGCCGCCTTCTTTATCGGACCAAAGTCGTTGAAGAGCTCCTTGATGTCCG
TGTTGGATACGCCGTAGTCCAGGTTACCGACGATGAGGCGGGTGGGTCCA
GATCCTCCACCGACGGCACCCCTCTTCGGTCCGTCGTACATATCGTGCTT
CCAAGCGCTGTTCACATCGCCCCGTGGGAACTTGGCCTTCTGAACGGCTC
CGGCGGCCACTCCTCCTCGCGGGCCCTTGAGCACGCTTCCTGGCTTCCTG
GGCGAGCCGCCGGCATTGGCTCCGCCGCGGCGGGCTCCACCAGCAAAACG
CTGCTGTCCGCCCGTTTTTCGGGCGCCACCTGGTCCGCCGCGGGCGGCTT
GCGGCTTTTTTTGCGAGCGTGTGGACTTAATGATGTCGTCGAGGCTCATT
TCAATTTTGTCCACCATGTCGACTGATAACT
BS05219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1101-PA | 801 | Aly-RA | 1..801 | 817..17 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ref1-RA | 1328 | CG1101-RA | 179..980 | 817..16 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7079963..7080209 | 571..817 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 7079253..7079456 | 369..572 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 7078819..7079020 | 169..370 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 7078252..7078408 | 16..172 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:26:03 has no hits.
BS05219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:49 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aly-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:21 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1101-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:04:45 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 170..980 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:12 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 170..980 | 16..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:12 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7078252..7078407 | 16..171 | 100 | <- | Plus |
3R | 7078822..7079019 | 172..369 | 100 | <- | Plus |
3R | 7079254..7079455 | 370..571 | 100 | <- | Plus |
3R | 7079964..7080218 | 572..827 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:04:45 Download gff for
BS05219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2903974..2904129 | 16..171 | 100 | <- | Plus |
arm_3R | 2904544..2904741 | 172..369 | 100 | <- | Plus |
arm_3R | 2904976..2905177 | 370..571 | 100 | <- | Plus |
arm_3R | 2905686..2905940 | 572..827 | 98 | | Plus |
BS05219.5prime Sequence
831 bp (819 high quality bases) assembled on 2005-11-29
> BS05219.5prime
GAAGTTATCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACA
TCATTAAGTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGA
CCAGGTGGCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGC
CCGCCGCGGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCG
TGCTCAAGGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCC
AAGTTCCCACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGA
CGGACCGAAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCA
TCGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTC
TTCAACGACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTC
CGGTCGCTCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACG
CCTTGAAGGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCT
ATGACCATTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGT
AGCCGCCACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCAT
TCAAGCGTGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAA
CGTCCGGTCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAA
GGCCCCGCCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCA
ACGACATGAAGATCTAAAAGCTTTCTAGACC
BS05219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1101-PA | 801 | Aly-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ref1-RA | 1328 | CG1101-RA | 179..980 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7079963..7080209 | 263..17 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 7079253..7079456 | 465..262 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 7078819..7079020 | 665..464 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 7078252..7078408 | 818..662 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:55:00 has no hits.
BS05219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:51 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aly-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:22 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1101-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:25 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 170..980 | 7..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:38 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 170..980 | 7..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:38 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7079254..7079455 | 263..464 | 100 | <- | Minus |
3R | 7079964..7080218 | 7..262 | 98 | | Minus |
3R | 7078822..7079019 | 465..662 | 100 | <- | Minus |
3R | 7078252..7078407 | 663..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:25 Download gff for
BS05219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2903974..2904129 | 663..818 | 100 | <- | Minus |
arm_3R | 2904544..2904741 | 465..662 | 100 | <- | Minus |
arm_3R | 2904976..2905177 | 263..464 | 100 | <- | Minus |
arm_3R | 2905686..2905940 | 7..262 | 98 | | Minus |
BS05219.complete Sequence
833 bp (833 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635076
> BS05219.complete
GAAGTTATCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACA
TCATTAAGTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGA
CCAGGTGGCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGC
CCGCCGCGGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCG
TGCTCAAGGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCC
AAGTTCCCACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGA
CGGACCGAAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCA
TCGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTC
TTCAACGACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTC
CGGTCGCTCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACG
CCTTGAAGGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCT
ATGACCATTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGT
AGCCGCCACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCAT
TCAAGCGTGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAA
CGTCCGGTCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAA
GGCCCCGCCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCA
ACGACATGAAGATCTAAAAGCTTTCTAGACCAT
BS05219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ref1-RA | 801 | CG1101-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ref1-RA | 1328 | CG1101-RA | 179..980 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7079963..7080209 | 263..17 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 7079253..7079456 | 465..262 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 7078819..7079020 | 665..464 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 7078252..7078408 | 818..662 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:47:03 has no hits.
BS05219.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:07 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aly-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:10 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aly-RA | 187..997 | 7..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:04 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 179..977 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:07 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aly-RA | 187..997 | 7..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:14 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ref1-RA | 179..977 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:14 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7079964..7080209 | 17..262 | 100 | | Minus |
3R | 7078255..7078407 | 663..815 | 100 | <- | Minus |
3R | 7078822..7079019 | 465..662 | 100 | <- | Minus |
3R | 7079254..7079455 | 263..464 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:04 Download gff for
BS05219.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2903977..2904129 | 663..815 | 100 | <- | Minus |
arm_3R | 2904544..2904741 | 465..662 | 100 | <- | Minus |
arm_3R | 2904976..2905177 | 263..464 | 100 | <- | Minus |
arm_3R | 2905686..2905931 | 17..262 | 100 | | Minus |
BS05219.pep Sequence
Translation from 16 to 816
> BS05219.pep
MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA
NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG
AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG
TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV
KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA
EELDAELDSYINDMKI*
BS05219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ref1-PA | 266 | CG1101-PA | 1..266 | 1..266 | 1378 | 100 | Plus |
Ref2-PC | 220 | CG17031-PC | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PB | 220 | CG17031-PB | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PA | 220 | CG17031-PA | 1..192 | 1..229 | 253 | 34.8 | Plus |