Clone Sequence Records
BS05222.3prime Sequence
714 bp (713 high quality bases) assembled on 2005-12-02
> BS05222.3prime
ATGGTCTAGAAAGCTTCTATTGTTGTGCCGCGGTCAAGGCCAAAACGGTG
AAGCGCACTTCGTTGGGATCGCGAGCCATGAACTCCTTGCAGACCTTGGC
CGCATCCTTCACAAAAGTCTCCTCCGAAGTCGGTCCGTGCTTGATCGGGA
AGGACTTGCGGCCATCCAGCTCGTACAGAGTACCCTCCTTGTTCACCAGT
GCGATGAAGTGGTGGATCACCTTCTCATGATTGGCGGCATTCGTCTGGCC
CTCTTGAGCCAAGGCCTCATGATCGGCGGTGAACTTCTCGTCTTTTTCGA
GGGCCCGTCCGCGTTCCTCCGGGGACAAGGAAGCTGTCTTCTCCAGGAAG
TCCTTCAGTACTCCGCGGTCAATGTCCACTTCTTTGTTGTTGGCCACGCT
GTGGATCAGGGCGACGGTTCCACAGGCGTTGTGGGTGAACTGGCGCATGT
AGAAGAGATCCTCGGGATGCTGCTCCTCCACCTCCTTAATCCGATCGTGC
TCCTCGGCGCGGTGCTTCTCATAGGTTTCGCTGCACGGGAAGAGCAAAAT
GAACGCCTTTACGGGACGCGGAATCCATTCCAAGGTGTCATCTTCCAATC
CAATGACGTCAGTTACCGACCAGGCTGGCGACACGCCCAGTTTATGTATG
TACTTGGTCAAAACCTCGGGATTAGATTCAAGTGGCGTCCAGGTTAACAT
GTCGACTGATAACT
BS05222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..812 | 700..17 | 3420 | 100 | Minus |
Uch-RA | 1196 | CG4265-RA | 281..964 | 700..17 | 3420 | 100 | Minus |
Uch-RC | 1035 | CG4265-RC | 129..803 | 700..17 | 3275 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212970..2213333 | 17..380 | 1820 | 100 | Plus |
2L | 23513712 | 2L | 2213415..2213557 | 381..523 | 715 | 100 | Plus |
2L | 23513712 | 2L | 2213616..2213758 | 524..666 | 715 | 100 | Plus |
2L | 23513712 | 2L | 2213894..2213931 | 663..700 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:52:11 has no hits.
BS05222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:54 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:26 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:54:16 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..964 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:09 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..964 | 17..700 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:09 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2213616..2213756 | 524..664 | 100 | <- | Plus |
2L | 2213896..2213931 | 665..700 | 100 | | Plus |
2L | 2212970..2213333 | 17..380 | 100 | <- | Plus |
2L | 2213415..2213557 | 381..523 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:54:16 Download gff for
BS05222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2212970..2213333 | 17..380 | 100 | <- | Plus |
arm_2L | 2213415..2213557 | 381..523 | 100 | <- | Plus |
arm_2L | 2213616..2213756 | 524..664 | 100 | <- | Plus |
arm_2L | 2213896..2213931 | 665..700 | 100 | | Plus |
BS05222.5prime Sequence
714 bp (713 high quality bases) assembled on 2005-11-29
> BS05222.5prime
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAATAG
AAGCTTTCTAGACC
BS05222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..812 | 17..700 | 3420 | 100 | Plus |
Uch-RA | 1196 | CG4265-RA | 281..964 | 17..700 | 3420 | 100 | Plus |
Uch-RC | 1035 | CG4265-RC | 129..803 | 17..700 | 3275 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212970..2213333 | 700..337 | 1820 | 100 | Minus |
2L | 23513712 | 2L | 2213415..2213557 | 336..194 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213616..2213758 | 193..51 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213894..2213931 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:42:12 has no hits.
BS05222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:55 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:28 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:57 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..964 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:05 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..964 | 17..700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:05 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2212970..2213333 | 337..700 | 100 | <- | Minus |
2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
2L | 2213896..2213931 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:57 Download gff for
BS05222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
arm_2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
arm_2L | 2213896..2213931 | 17..52 | 100 | | Minus |
arm_2L | 2212970..2213333 | 337..700 | 100 | <- | Minus |
BS05222.complete Sequence
716 bp (716 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638780
> BS05222.complete
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAATAG
AAGCTTTCTAGACCAT
BS05222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 684 | CG4265-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
Uch-RA | 684 | CG4265-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Uch-RC | 675 | CG4265-PC | 1..675 | 17..700 | 3250 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..812 | 17..700 | 3420 | 100 | Plus |
Uch-RA | 1196 | CG4265-RA | 281..964 | 17..700 | 3420 | 100 | Plus |
Uch-RC | 1035 | CG4265-RC | 129..803 | 17..700 | 3250 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212970..2213333 | 700..337 | 1820 | 100 | Minus |
2L | 23513712 | 2L | 2213415..2213557 | 336..194 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213616..2213758 | 193..51 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213894..2213931 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:44 has no hits.
BS05222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:08 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:11 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 249..932 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:40 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 286..964 | 22..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:08 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 249..932 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:07 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 286..964 | 22..700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:07 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
2L | 2213896..2213926 | 22..52 | 100 | | Minus |
2L | 2212970..2213333 | 337..700 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:40 Download gff for
BS05222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2212970..2213333 | 337..700 | 100 | <- | Minus |
arm_2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
arm_2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
arm_2L | 2213896..2213926 | 22..52 | 100 | | Minus |
BS05222.pep Sequence
Translation from 16 to 699
> BS05222.pep
MLTWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRPVKAF
ILLFPCSETYEKHRAEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIH
SVANNKEVDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQE
GQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDA
AKVCKEFMARDPNEVRFTVLALTAAQQ*
BS05222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-PB | 227 | CG4265-PB | 1..227 | 1..227 | 1194 | 100 | Plus |
Uch-PA | 227 | CG4265-PA | 1..227 | 1..227 | 1194 | 100 | Plus |
Uch-PC | 224 | CG4265-PC | 1..224 | 1..227 | 1163 | 98.7 | Plus |
Uch-L5-PB | 324 | CG3431-PB | 8..227 | 4..227 | 182 | 26.4 | Plus |
Uch-L5-PA | 324 | CG3431-PA | 8..227 | 4..227 | 182 | 26.4 | Plus |