Clone BS05222 Report

Search the DGRC for BS05222

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptUch-RA
Protein status:BS05222.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05222.3prime Sequence

714 bp (713 high quality bases) assembled on 2005-12-02

> BS05222.3prime
ATGGTCTAGAAAGCTTCTATTGTTGTGCCGCGGTCAAGGCCAAAACGGTG
AAGCGCACTTCGTTGGGATCGCGAGCCATGAACTCCTTGCAGACCTTGGC
CGCATCCTTCACAAAAGTCTCCTCCGAAGTCGGTCCGTGCTTGATCGGGA
AGGACTTGCGGCCATCCAGCTCGTACAGAGTACCCTCCTTGTTCACCAGT
GCGATGAAGTGGTGGATCACCTTCTCATGATTGGCGGCATTCGTCTGGCC
CTCTTGAGCCAAGGCCTCATGATCGGCGGTGAACTTCTCGTCTTTTTCGA
GGGCCCGTCCGCGTTCCTCCGGGGACAAGGAAGCTGTCTTCTCCAGGAAG
TCCTTCAGTACTCCGCGGTCAATGTCCACTTCTTTGTTGTTGGCCACGCT
GTGGATCAGGGCGACGGTTCCACAGGCGTTGTGGGTGAACTGGCGCATGT
AGAAGAGATCCTCGGGATGCTGCTCCTCCACCTCCTTAATCCGATCGTGC
TCCTCGGCGCGGTGCTTCTCATAGGTTTCGCTGCACGGGAAGAGCAAAAT
GAACGCCTTTACGGGACGCGGAATCCATTCCAAGGTGTCATCTTCCAATC
CAATGACGTCAGTTACCGACCAGGCTGGCGACACGCCCAGTTTATGTATG
TACTTGGTCAAAACCTCGGGATTAGATTCAAGTGGCGTCCAGGTTAACAT
GTCGACTGATAACT

BS05222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4265-PA 684 Uch-RA 1..684 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 1044 CG4265-RB 129..812 700..17 3420 100 Minus
Uch-RA 1196 CG4265-RA 281..964 700..17 3420 100 Minus
Uch-RC 1035 CG4265-RC 129..803 700..17 3275 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2212970..2213333 17..380 1820 100 Plus
2L 23513712 2L 2213415..2213557 381..523 715 100 Plus
2L 23513712 2L 2213616..2213758 524..666 715 100 Plus
2L 23513712 2L 2213894..2213931 663..700 190 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:52:11 has no hits.

BS05222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:54 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:26 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4265-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:54:16 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..964 17..700 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:09 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..964 17..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:09 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2213616..2213756 524..664 100 <- Plus
2L 2213896..2213931 665..700 100   Plus
2L 2212970..2213333 17..380 100 <- Plus
2L 2213415..2213557 381..523 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:54:16 Download gff for BS05222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2212970..2213333 17..380 100 <- Plus
arm_2L 2213415..2213557 381..523 100 <- Plus
arm_2L 2213616..2213756 524..664 100 <- Plus
arm_2L 2213896..2213931 665..700 100   Plus

BS05222.5prime Sequence

714 bp (713 high quality bases) assembled on 2005-11-29

> BS05222.5prime
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAATAG
AAGCTTTCTAGACC

BS05222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4265-PA 684 Uch-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 1044 CG4265-RB 129..812 17..700 3420 100 Plus
Uch-RA 1196 CG4265-RA 281..964 17..700 3420 100 Plus
Uch-RC 1035 CG4265-RC 129..803 17..700 3275 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2212970..2213333 700..337 1820 100 Minus
2L 23513712 2L 2213415..2213557 336..194 715 100 Minus
2L 23513712 2L 2213616..2213758 193..51 715 100 Minus
2L 23513712 2L 2213894..2213931 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:42:12 has no hits.

BS05222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:55 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:28 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4265-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:57 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..964 17..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:05 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 281..964 17..700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:05 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2212970..2213333 337..700 100 <- Minus
2L 2213415..2213557 194..336 100 <- Minus
2L 2213616..2213756 53..193 100 <- Minus
2L 2213896..2213931 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:57 Download gff for BS05222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2213415..2213557 194..336 100 <- Minus
arm_2L 2213616..2213756 53..193 100 <- Minus
arm_2L 2213896..2213931 17..52 100   Minus
arm_2L 2212970..2213333 337..700 100 <- Minus

BS05222.complete Sequence

716 bp (716 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638780

> BS05222.complete
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAATAG
AAGCTTTCTAGACCAT

BS05222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 684 CG4265-PB 1..684 17..700 3420 100 Plus
Uch-RA 684 CG4265-PA 1..684 17..700 3420 100 Plus
Uch-RC 675 CG4265-PC 1..675 17..700 3250 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-RB 1044 CG4265-RB 129..812 17..700 3420 100 Plus
Uch-RA 1196 CG4265-RA 281..964 17..700 3420 100 Plus
Uch-RC 1035 CG4265-RC 129..803 17..700 3250 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2212970..2213333 700..337 1820 100 Minus
2L 23513712 2L 2213415..2213557 336..194 715 100 Minus
2L 23513712 2L 2213616..2213758 193..51 715 100 Minus
2L 23513712 2L 2213894..2213931 54..17 190 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:55:44 has no hits.

BS05222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:08 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:11 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 249..932 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:40 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 286..964 22..700 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:08 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 249..932 17..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:07 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
Uch-RA 286..964 22..700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:07 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2213415..2213557 194..336 100 <- Minus
2L 2213616..2213756 53..193 100 <- Minus
2L 2213896..2213926 22..52 100   Minus
2L 2212970..2213333 337..700 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:40 Download gff for BS05222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2212970..2213333 337..700 100 <- Minus
arm_2L 2213415..2213557 194..336 100 <- Minus
arm_2L 2213616..2213756 53..193 100 <- Minus
arm_2L 2213896..2213926 22..52 100   Minus

BS05222.pep Sequence

Translation from 16 to 699

> BS05222.pep
MLTWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRPVKAF
ILLFPCSETYEKHRAEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIH
SVANNKEVDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQE
GQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDA
AKVCKEFMARDPNEVRFTVLALTAAQQ*

BS05222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Uch-PB 227 CG4265-PB 1..227 1..227 1194 100 Plus
Uch-PA 227 CG4265-PA 1..227 1..227 1194 100 Plus
Uch-PC 224 CG4265-PC 1..224 1..227 1163 98.7 Plus
Uch-L5-PB 324 CG3431-PB 8..227 4..227 182 26.4 Plus
Uch-L5-PA 324 CG3431-PA 8..227 4..227 182 26.4 Plus