Clone Sequence Records
BS05224.3prime Sequence
874 bp (867 high quality bases) assembled on 2005-12-02
> BS05224.3prime
ATGGTCTAGAAAGCTTCTAATTCAAGGTGCCAAACTTGAGACGCAATTGC
TCCAGGAACACAAAGGTGATGATCGTGTGTGGACCCAGACGCACAAATGC
CGGCACATAGCCCTTAAAGAAGCCGAGGGGACCCAGTTTCGCCGTGTGCT
TCACGATGTCCCACAGGCCATTGAACTCGCCGGGTTTCGCGTTCATGGAC
CGCGTCTTCAGCACATCCAACGGTTGGGTGAGAGTGGTGGCTATCGTTCC
GGCCACCAGGGAGGCGGTGAAGTGCGTAACCAGGTTGTCTTGGAAATAAG
GCGTGGCCAGCAGGTAGATCTTCGTCTGGTCGTAAAATGCAATTTGGCCA
ATCGTCATCAGGATTCCACGGGCAGTCGCTGCGGTGGCTCCAGAAAAGAG
TCGCTTGAATCCCTCCTGGCGGTAGACCCTAACCAGTCCATCGAAGGCAT
TATTGTAGTTGCGTCGTTGTTGCGGCGGTAGTTTTACGTCGTTCTGCATG
CGCACATTGACCATGTCAGCCGGAGTTCCAACGATTCCTCCGACGAGACC
GGATGCACCTGCCAGGGCCACCTTGCCGCCAAAGCTGTCCGTATTGACGT
ACTTCTTTCCGGCCTCATACACCCCGAATCTCGCAGTGGAGTATGTCAAT
TGGCGCAACACTGAGGCGGAGAGGCCGTTGTAGAAGACGAGTACTCCCTG
TTCGCGGGCGAGTTTAGGGATCAACTGGGCCACCGACAGGTGACCCTGTT
GCGTCTGCAGCGTGACCTTGATGAGGTCGAGCGGATGGGTCACCATGGCC
GCACCTACGCTCGCCAATCCGCCAAAAGAACCACATCGATTTTCTCTCTT
GGTGGGGCATGTCGACTGATAACT
BS05224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8790-PB | 843 | CG8790-RB | 34..843 | 826..17 | 4050 | 100 | Minus |
CG8790-PA | 843 | CG8790-RA | 34..843 | 826..17 | 4050 | 100 | Minus |
CG8790-PB | 843 | CG8790-RB | 1..36 | 860..825 | 180 | 100 | Minus |
CG8790-PA | 843 | CG8790-RA | 1..36 | 860..825 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..1002 | 860..17 | 4195 | 99.9 | Minus |
Dic1-RA | 1400 | CG8790-RA | 160..1002 | 860..17 | 4195 | 99.9 | Minus |
Dic1-RB | 1555 | CG8790-RB | 315..1157 | 860..17 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368693 | 458..17 | 2210 | 100 | Minus |
3R | 32079331 | 3R | 13367761..13368161 | 860..459 | 1960 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:13:42 has no hits.
BS05224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:58 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:31 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:20 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1161 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:23 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1161 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:23 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 459..860 | 99 | -> | Minus |
3R | 13368252..13368697 | 13..458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:20 Download gff for
BS05224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 459..860 | 99 | -> | Minus |
arm_3R | 9193974..9194419 | 13..458 | 99 | | Minus |
BS05224.5prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-02
> BS05224.5prime
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGG
BS05224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8790-PB | 843 | CG8790-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
CG8790-PA | 843 | CG8790-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..967 | 17..824 | 4040 | 100 | Plus |
Dic1-RA | 1400 | CG8790-RA | 160..967 | 17..824 | 4040 | 100 | Plus |
Dic1-RB | 1555 | CG8790-RB | 315..1122 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368658 | 418..824 | 2035 | 100 | Plus |
3R | 32079331 | 3R | 13367761..13368161 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:53:06 has no hits.
BS05224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:59 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:33 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:03 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1122 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:16 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1122 | 17..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:16 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 17..417 | 100 | -> | Plus |
3R | 13368252..13368658 | 418..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:03 Download gff for
BS05224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 17..417 | 100 | -> | Plus |
arm_3R | 9193974..9194380 | 418..824 | 100 | | Plus |
BS05224.complete Sequence
875 bp (875 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635077
> BS05224.complete
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACC
TTGAATTAGAAGCTTTCTAGACCAT
BS05224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 843 | CG8790-PC | 1..843 | 17..859 | 4215 | 100 | Plus |
Dic1-RA | 843 | CG8790-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Dic1-RB | 843 | CG8790-PB | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..1002 | 17..859 | 4215 | 100 | Plus |
Dic1-RA | 1400 | CG8790-RA | 160..1002 | 17..859 | 4215 | 100 | Plus |
Dic1-RB | 1555 | CG8790-RB | 315..1157 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368693 | 418..859 | 2210 | 100 | Plus |
3R | 32079331 | 3R | 13367761..13368161 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:53:42 has no hits.
BS05224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:09 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:13 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 154..1000 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:05 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1157 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:09 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 154..1000 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:16 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1157 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:16 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 17..417 | 100 | -> | Plus |
3R | 13368252..13368693 | 418..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:05 Download gff for
BS05224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 17..417 | 100 | -> | Plus |
arm_3R | 9193974..9194415 | 418..859 | 100 | | Plus |
BS05224.pep Sequence
Translation from 16 to 858
> BS05224.pep
MPHQERKSMWFFGGLASVGAAMVTHPLDLIKVTLQTQQGHLSVAQLIPKL
AREQGVLVFYNGLSASVLRQLTYSTARFGVYEAGKKYVNTDSFGGKVALA
GASGLVGGIVGTPADMVNVRMQNDVKLPPQQRRNYNNAFDGLVRVYRQEG
FKRLFSGATAATARGILMTIGQIAFYDQTKIYLLATPYFQDNLVTHFTAS
LVAGTIATTLTQPLDVLKTRSMNAKPGEFNGLWDIVKHTAKLGPLGFFKG
YVPAFVRLGPHTIITFVFLEQLRLKFGTLN*
BS05224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-PC | 280 | CG8790-PC | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic1-PA | 280 | CG8790-PA | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic1-PB | 280 | CG8790-PB | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic2-PC | 304 | CG4323-PC | 12..287 | 3..279 | 801 | 55.2 | Plus |
Dic2-PA | 304 | CG4323-PA | 12..287 | 3..279 | 801 | 55.2 | Plus |