Clone BS05224 Report

Search the DGRC for BS05224

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptDic1-RA
Protein status:BS05224.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05224.3prime Sequence

874 bp (867 high quality bases) assembled on 2005-12-02

> BS05224.3prime
ATGGTCTAGAAAGCTTCTAATTCAAGGTGCCAAACTTGAGACGCAATTGC
TCCAGGAACACAAAGGTGATGATCGTGTGTGGACCCAGACGCACAAATGC
CGGCACATAGCCCTTAAAGAAGCCGAGGGGACCCAGTTTCGCCGTGTGCT
TCACGATGTCCCACAGGCCATTGAACTCGCCGGGTTTCGCGTTCATGGAC
CGCGTCTTCAGCACATCCAACGGTTGGGTGAGAGTGGTGGCTATCGTTCC
GGCCACCAGGGAGGCGGTGAAGTGCGTAACCAGGTTGTCTTGGAAATAAG
GCGTGGCCAGCAGGTAGATCTTCGTCTGGTCGTAAAATGCAATTTGGCCA
ATCGTCATCAGGATTCCACGGGCAGTCGCTGCGGTGGCTCCAGAAAAGAG
TCGCTTGAATCCCTCCTGGCGGTAGACCCTAACCAGTCCATCGAAGGCAT
TATTGTAGTTGCGTCGTTGTTGCGGCGGTAGTTTTACGTCGTTCTGCATG
CGCACATTGACCATGTCAGCCGGAGTTCCAACGATTCCTCCGACGAGACC
GGATGCACCTGCCAGGGCCACCTTGCCGCCAAAGCTGTCCGTATTGACGT
ACTTCTTTCCGGCCTCATACACCCCGAATCTCGCAGTGGAGTATGTCAAT
TGGCGCAACACTGAGGCGGAGAGGCCGTTGTAGAAGACGAGTACTCCCTG
TTCGCGGGCGAGTTTAGGGATCAACTGGGCCACCGACAGGTGACCCTGTT
GCGTCTGCAGCGTGACCTTGATGAGGTCGAGCGGATGGGTCACCATGGCC
GCACCTACGCTCGCCAATCCGCCAAAAGAACCACATCGATTTTCTCTCTT
GGTGGGGCATGTCGACTGATAACT

BS05224.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8790-PB 843 CG8790-RB 34..843 826..17 4050 100 Minus
CG8790-PA 843 CG8790-RA 34..843 826..17 4050 100 Minus
CG8790-PB 843 CG8790-RB 1..36 860..825 180 100 Minus
CG8790-PA 843 CG8790-RA 1..36 860..825 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..1002 860..17 4195 99.9 Minus
Dic1-RA 1400 CG8790-RA 160..1002 860..17 4195 99.9 Minus
Dic1-RB 1555 CG8790-RB 315..1157 860..17 4195 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368693 458..17 2210 100 Minus
3R 32079331 3R 13367761..13368161 860..459 1960 99.8 Minus
Blast to na_te.dros performed on 2015-02-09 02:13:42 has no hits.

BS05224.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:58 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:31 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:20 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1161 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:23 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1161 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:23 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 459..860 99 -> Minus
3R 13368252..13368697 13..458 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:20 Download gff for BS05224.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 459..860 99 -> Minus
arm_3R 9193974..9194419 13..458 99   Minus

BS05224.5prime Sequence

824 bp (823 high quality bases) assembled on 2005-12-02

> BS05224.5prime
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGG

BS05224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8790-PB 843 CG8790-RB 1..808 17..824 4040 100 Plus
CG8790-PA 843 CG8790-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..967 17..824 4040 100 Plus
Dic1-RA 1400 CG8790-RA 160..967 17..824 4040 100 Plus
Dic1-RB 1555 CG8790-RB 315..1122 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368658 418..824 2035 100 Plus
3R 32079331 3R 13367761..13368161 17..417 2005 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:53:06 has no hits.

BS05224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:04:59 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:33 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:03 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1122 17..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:16 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1122 17..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:16 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 17..417 100 -> Plus
3R 13368252..13368658 418..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:03 Download gff for BS05224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 17..417 100 -> Plus
arm_3R 9193974..9194380 418..824 100   Plus

BS05224.complete Sequence

875 bp (875 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635077

> BS05224.complete
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACC
TTGAATTAGAAGCTTTCTAGACCAT

BS05224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 843 CG8790-PC 1..843 17..859 4215 100 Plus
Dic1-RA 843 CG8790-PA 1..843 17..859 4215 100 Plus
Dic1-RB 843 CG8790-PB 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..1002 17..859 4215 100 Plus
Dic1-RA 1400 CG8790-RA 160..1002 17..859 4215 100 Plus
Dic1-RB 1555 CG8790-RB 315..1157 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368693 418..859 2210 100 Plus
3R 32079331 3R 13367761..13368161 17..417 2005 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:53:42 has no hits.

BS05224.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:09 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:13 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 154..1000 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:05 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1157 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:09 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 154..1000 17..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:16 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1157 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:16 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 17..417 100 -> Plus
3R 13368252..13368693 418..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:05 Download gff for BS05224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 17..417 100 -> Plus
arm_3R 9193974..9194415 418..859 100   Plus

BS05224.pep Sequence

Translation from 16 to 858

> BS05224.pep
MPHQERKSMWFFGGLASVGAAMVTHPLDLIKVTLQTQQGHLSVAQLIPKL
AREQGVLVFYNGLSASVLRQLTYSTARFGVYEAGKKYVNTDSFGGKVALA
GASGLVGGIVGTPADMVNVRMQNDVKLPPQQRRNYNNAFDGLVRVYRQEG
FKRLFSGATAATARGILMTIGQIAFYDQTKIYLLATPYFQDNLVTHFTAS
LVAGTIATTLTQPLDVLKTRSMNAKPGEFNGLWDIVKHTAKLGPLGFFKG
YVPAFVRLGPHTIITFVFLEQLRLKFGTLN*

BS05224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-PC 280 CG8790-PC 1..280 1..280 1437 100 Plus
Dic1-PA 280 CG8790-PA 1..280 1..280 1437 100 Plus
Dic1-PB 280 CG8790-PB 1..280 1..280 1437 100 Plus
Dic2-PC 304 CG4323-PC 12..287 3..279 801 55.2 Plus
Dic2-PA 304 CG4323-PA 12..287 3..279 801 55.2 Plus