Clone Sequence Records
BS05225.3prime Sequence
937 bp (891 high quality bases) assembled on 2005-12-02
> BS05225.3prime
ATGGTCTAGAAAGCTTCTAGCGCGGTGCAATTAGCTCGTACATGGCGTAC
TTCCATGTCCACGCGCGCACCAGTTGCTCGAACCTTTCGCGCTCGTGCTC
ATAGATGTATCCAAGTTCAGGCTCCATGCAGACTTCGGTATACGGATCGG
TCAGCAGGCTCTGCACAGAAAGCAGCACCTTGGCCACGTTCAGCGCCAGA
GACCAGTTGTGCTGCTGGAAGATGTCGATGCCCACGTCCCCATGCCGCGA
AACATTCGGATGCAGGATTTTGGTGAGGAAACGTACTGTGGGCGGCGTCA
TCGGATATCGCTCCGGGAAGTATATGAACAGGAAGAACTTGCCGCCTTCG
TAGGGACTGCCCGGTGGCCCCAGAATTGTCGCCTGCCAGTAGTTGTTTTG
CCGATCCAACGGTATGGCCGATATGCCCTCAGATTCGTAGCTGTTCAGCA
GATTGGCTTCACCGCGCAGAAAGTTGTTGCGCATTACATTGCCCGGCTCC
CGATCGCCCAGCTGTGGATCTGCCTCCTGTGCATCCTGACCCCGACCGCC
CATCTCAATCAGGCAAGTGCGACAGAAGCAGGAAGACATCAGTGCCCCGT
ACAGCCGATACCAGTTTGGATTGTCTGCCAAACTGTCGAACAGCGGCCAG
CGCTGCTTGATATACGCCTTCCACATGCTCTGGGCCGTGTTTTTCCCGAC
AATGTCGTGCCATTGCTTGCAAACTTCACTAGCCATCCACAGCGACATGT
CGTCCAAATAGGCAAATATTTTCAGCATCACCTCGACGGGTATTATGTTG
ACAATGTTTCTGCTGCTGCCACTTGCTCCGCTTCCGCTGGCGGCGTTGTA
TTCATGCACTCGCGCCCTTCCATCGGCCAGCTCATGCATGTAATGGGGCA
GAGCCAAGGGAGCCGTGGCCCCGCGGACGCTTAATGG
BS05225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 572..1476 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 630..1552 | 937..14 | 4595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443067..4443989 | 14..937 | 4570 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:56:30 has no hits.
BS05225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:01 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 557..1476 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:34 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 557..1476 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:54:49 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 630..1552 | 14..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:06 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 630..1552 | 14..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:06 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4443067..4443989 | 14..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:54:49 Download gff for
BS05225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443067..4443989 | 14..937 | 99 | | Plus |
BS05225.5prime Sequence
907 bp (837 high quality bases) assembled on 2005-11-29
> BS05225.5prime
GAAGTTATCAGTCGACATGACTAGCTGCGTGCCAGCGCATCAGCAAAAGG
ACCAGGAGCAGTTGCTAAAGGAACTGGCCAGCAGTGGCGACGAGATGGAC
GACCCGGACGATCCGGACCAGGAACACCACCAGCTGGTAGAGCCGACCTT
CTCTTTTTCGAATAGTAACACCTGCTGGGTGTGCAACGGCTACTATGGGC
CCAACTTCGGGGAGCCGTTGTGCGGCGCCTGCCACGCCTTCCTGTACAAC
GCACAGCGGGCGGAGGAGCTGCTCACGGAGCTTTCCGATGACGAGGATTC
TGGGAACGACGAGCCGCCGTTCAAGGACAAGCAGGAAGACGAGGAGACCG
AAAACGACGTAGACATCATGGGCTTTGAGGATCTGGAGGACCCCCAACCG
GCAGCCGTGCCACAACATCCAAATCCGCAGCCACCAATGGAGCCACAGGA
TCAACAGCCAGCCCAACCAGTTATAGATCTGCCACAGCCGGTGCCGGAGG
CTGCGGCACCACGACGCGAGTCTCCGGAGCGCGACTTTGAGCACGAGAGA
GCCATTAATCCCTTCCTGCTGCCCATTAAGCGTCCGCGGGCCACGGCTCC
CTTGGCTCTGCCCCATTACATGCATGAGCTGGCCGATGGAAGGGCGCGAG
TGCATGAATACAACGCCGCCAGCGGAAGCGGAGCAAGTGGCAGCAGCAGA
AACATTGTCAACATAATACCCGTCGAGGTGATGCTGAAAATATTTGCCTA
TTTGGACGACATGTCGCTGTGGATGGCTAGTGAAGTTTGCAAGCAATGGC
ACGACATTGTCGGGAAAAACACGGCCCAGAGCATGTGGAANGCGTATATC
AAGCAGCGCTGGGCGCTGTTCGACAGTTTGGCAGACAATCCAAACTGGTA
TCGGCTG
BS05225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 1..891 | 17..907 | 4411 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 74..964 | 17..907 | 4429 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443655..4444402 | 907..160 | 3714 | 99.7 | Minus |
| 2L | 23513712 | 2L | 4444464..4444607 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 08:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11081..11134 | 653..706 | 108 | 66.7 | Plus |
BS05225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:02 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:35 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:14 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 66..964 | 8..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:10 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 66..964 | 8..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:10 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4444464..4444615 | 8..160 | 97 | | Minus |
| 2L | 4443655..4444401 | 161..907 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:14 Download gff for
BS05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4444464..4444615 | 8..160 | 97 | | Minus |
| arm_2L | 4443655..4444401 | 161..907 | 99 | <- | Minus |
BS05225.complete Sequence
1508 bp (1508 high quality bases) assembled on 2006-02-02
> BS05225.complete
GAAGTTATCAGTCGACATGACTAGCTGCGTGCCAGCGCATCAGCAAAAGG
ACCAGGAGCAGTTGCTAAAGGAACTGGCCAGCAGTGGCGACGAGATGGAC
GACCCGGACGATCCGGACCAGGAACACCACCAGCTGGTAGAGCCGACCTT
CTCTTTTTCGAATAGTAACACCTGCTGGGTGTGCAACGGCTACTATGGGC
CCAACTTCGGGGAGCCGTTGTGCGGCGCCTGCCACGCCTTCCTGTACAAC
GCACAGCGGGCGGAGGAGCTGCTCACGGAGCTTTCCGATGACGAGGATTC
TGGGAACGACGAGCCGCCGTTCAAGGACAAGCAGGAAGACGAGGAGACCG
AAAACGACGTAGACATCATGGGCTTTGAGGATCTGGAGGACCCCCAACCG
GCAGCCGTGCCACAACATCCAAATCCGCAGCCACCAATGGAGCCACAGGA
TCAACAGCCAGCCCAACCAGTTATAGATCTGCCACAGCCGGTGCCGGAGG
CTGCGGCACCACGACGCGAGTCTCCGGAGCGCGACTTTGAGCACGAGAGA
GCCATTAATCCCTTCCTGCTGCCCATTAAGCGTCCGCGGGCCACGGCTCC
CTTGGCTCTGCCCCATTACATGCATGAGCTGGCCGATGGAAGGGCGCGAG
TGCATGAATACAACGCCGCCAGCGGAAGCGGAGCAAGTGGCAGCAGCAGA
AACATTGTCAACATAATACCCGTCGAGGTGATGCTGAAAATATTTGCCTA
TTTGGACGACATGTCGCTGTGGATGGCTAGTGAAGTTTGCAAGCAATGGC
ACGACATTGTCGGGAAAAACACGGCCCAGAGCATGTGGAAGGCGTATATC
AAGCAGCGCTGGCCGCTGTTCGACAGTTTGGCAGACAATCCAAACTGGTA
TCGGCTGTACGGGGCACTGATGTCTTCCTGCTTCTGTCGCACTTGCCTGA
TTGAGATGGGCGGTCGGGGTCAGGATGCACAGGAGGCAGATCCACAGCTG
GGCGATCGGGAGCCGGGCAATGTAATGCGCAACAACTTTCTGCGCGGTGA
AGCCAATCTGCTGAACAGCTACGAATCTGAGGGCATATCGGCCATACCGT
TGGATCGGCAAAACAACTACTGGCAGGCGACAATTCTGGGGCCACCGGGC
AGTCCCTACGAAGGCGGCAAGTTCTTCCTGTTCATATACTTCCCGGAGCG
ATATCCGATGACGCCGCCCACAGTACGTTTCCTCACCAAAATCCTGCATC
CGAATGTTTCGCGGCATGGGGACGTGGGCATCGACATCTTCCAGCAGCAC
AACTGGTCTCTGGCGCTGAACGTGGCCAAGGTGCTGCTTTCTGTGCAGAG
CCTGCTGACCGATCCGTATACCGAAGTCTGCATGGAGCCTGAACTTGGAT
ACATCTATGAGCACGAGCGCGAAAGGTTCGAGCAACTGGTGCGCGCGTGG
ACATGGAAGTACGCCATGTACGAGCTAATTGCACCGCGCTAGAAGCTTTC
TAGACCAT
BS05225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1476 | CG15437-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 74..1552 | 17..1495 | 7395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443067..4444402 | 1495..160 | 6680 | 100 | Minus |
| 2L | 23513712 | 2L | 4444464..4444607 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:54 has no hits.
BS05225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:10 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 1..1476 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:14 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 63..1549 | 8..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:12 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 74..1549 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:11 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 63..1549 | 8..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:14 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 74..1549 | 17..1492 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:14 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4443070..4444401 | 161..1492 | 100 | <- | Minus |
| 2L | 4444464..4444607 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:12 Download gff for
BS05225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443070..4444401 | 161..1492 | 100 | <- | Minus |
| arm_2L | 4444464..4444607 | 17..160 | 100 | | Minus |
BS05225.pep Sequence
Translation from 16 to 1491
> BS05225.pep
MTSCVPAHQQKDQEQLLKELASSGDEMDDPDDPDQEHHQLVEPTFSFSNS
NTCWVCNGYYGPNFGEPLCGACHAFLYNAQRAEELLTELSDDEDSGNDEP
PFKDKQEDEETENDVDIMGFEDLEDPQPAAVPQHPNPQPPMEPQDQQPAQ
PVIDLPQPVPEAAAPRRESPERDFEHERAINPFLLPIKRPRATAPLALPH
YMHELADGRARVHEYNAASGSGASGSSRNIVNIIPVEVMLKIFAYLDDMS
LWMASEVCKQWHDIVGKNTAQSMWKAYIKQRWPLFDSLADNPNWYRLYGA
LMSSCFCRTCLIEMGGRGQDAQEADPQLGDREPGNVMRNNFLRGEANLLN
SYESEGISAIPLDRQNNYWQATILGPPGSPYEGGKFFLFIYFPERYPMTP
PTVRFLTKILHPNVSRHGDVGIDIFQQHNWSLALNVAKVLLSVQSLLTDP
YTEVCMEPELGYIYEHERERFEQLVRAWTWKYAMYELIAPR*
BS05225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-PA | 491 | CG15437-PA | 1..491 | 1..491 | 2680 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 22..147 | 358..484 | 336 | 50.4 | Plus |
| eff-PB | 147 | CG7425-PB | 22..147 | 358..484 | 336 | 50.4 | Plus |
| eff-PA | 147 | CG7425-PA | 22..147 | 358..484 | 336 | 50.4 | Plus |
| CG3473-PB | 151 | CG3473-PB | 22..149 | 356..484 | 259 | 42.6 | Plus |
