Clone BS05226 Report

Search the DGRC for BS05226

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRh3-RA
Protein status:BS05226.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05226.3prime Sequence

862 bp (825 high quality bases) assembled on 2005-12-02

> BS05226.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCGGTGGTCTGCTGTGGTTCCTGGGTG
GTGCTGGTGGAGGCGACAGCCGACGATTCCGGCGCCTTTTCGTTGAGCGC
CAGCCAGGGACATCGCTTCTGCAGCTCCATGCGGTATCTGGGATGACTTA
TGGCGTACACGAACGGATCGATGCAGGCCACCATTTTGCAGGCACAGGCG
GGAATCATTGTGGCTCCGGGCGTCAAAAGGGTCTTATCCCCAAAGGCGCC
AATCAGCGACATAACTCCGTACGGCGTCCACGAGCAAAAGAACAGGAAGC
ATATGGTGATGGCCGCTTTGGCTATCCGGATTTCCGCCGTCTCCTTGTTT
TTGTCCACATTCGAACGCAGCGATTCCACGTTCATCTTCTTGGCCTGATC
CCGCAGTGCTTTCTCGTGGCTAAAGACATGGCCCACAATCTGGGAGTAGT
AGTACGTGATCATCGTGGTGGGACACACGAAGCTGAAGAAGAAGATGCAG
GCCACAAAGAGTCGCGTATCGAAGTTATCGGTGAGATAGTCAAAGGTGCA
GGATGTCAGATATCCCTCCGGCACAAAACGGCCCCAAGTCTCCGTGTAGC
AGGCAACCACCCATGGAGTGGCGTACATGTAGATGAATATGATCATGGCA
ATGGCCTTGCCATGCGTCATCTTGCCCTCCATGGGTCGAGTGATCACATT
GAATCGATCGTAGGCTATAAACGCATTGGTGGCACCGGCAGCGATTCCCG
TATAGGAGCCAATGATTCCAAAGATCTGGCATCCCAGATGACCCAGCGCA
TATCCCTGGTGGAAGCTATTGTAGATGAATATCGGAGTCTTGACCATCAT
CATGAAGTCGCA

BS05226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10888-PA 1152 Rh3-RA 307..1152 862..17 4230 100 Minus
CG9668-PA 1137 Rh4-RA 703..869 454..288 310 87.4 Minus
CG9668-PA 1137 Rh4-RA 965..1057 192..100 215 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 331..1176 862..17 4230 100 Minus
Rh4-RA 1349 CG9668-RA 361..1118 843..86 1270 78.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081275..20082120 17..862 4230 100 Plus
3L 28110227 3L 16852758..16853240 86..568 1170 82.8 Plus
3L 28110227 3L 16862004..16862157 690..843 185 74.7 Plus
Blast to na_te.dros performed on 2015-02-03 12:30:43 has no hits.

BS05226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:03 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-PA 308..1152 17..861 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:36 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10888-PA 308..1152 17..861 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:47 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 332..1179 13..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:01 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 332..1179 13..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:01 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20081272..20082119 13..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:47 Download gff for BS05226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15906994..15907841 13..861 99   Plus

BS05226.5prime Sequence

930 bp (830 high quality bases) assembled on 2005-11-29

> BS05226.5prime
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGGAGTTATGTCGC

BS05226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10888-PA 1152 Rh3-RA 1..902 17..918 4510 100 Plus
CG9668-PA 1137 Rh4-RA 703..869 731..897 310 87.4 Plus
CG5192-PB 1156 Rh6-RB 260..291 309..340 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 24..937 16..930 4550 99.9 Plus
Rh4-RA 1349 CG9668-RA 132..948 113..930 960 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081514..20082427 930..16 4525 99.9 Minus
3L 28110227 3L 16852939..16853240 918..617 730 82.8 Minus
3L 28110227 3L 16862004..16862386 495..113 310 72.1 Minus
Blast to na_te.dros performed on 2015-02-13 08:22:46 has no hits.

BS05226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:04 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-PA 1..913 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:38 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10888-PA 1..913 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:11 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..937 16..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:06 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..937 16..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:06 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20081514..20082427 16..930 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:11 Download gff for BS05226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15907236..15908149 16..930 99   Minus

BS05226.complete Sequence

1184 bp (1184 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635078

> BS05226.complete
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGAGTTATGTCGCTGATTGGCGCCTTTGGGGATA
AGACCCTTTTGACGCCCGGAGCCACAATGATTCCCGCCTGTGCCTGCAAA
ATGGTGGCCTGCATCGATCCGTTCGTGTACGCCATAAGTCATCCCAGATA
CCGCATGGAGCTGCAGAAGCGATGTCCCTGGCTGGCGCTCAACGAAAAGG
CGCCGGAATCGTCGGCTGTCGCCTCCACCAGCACCACCCAGGAACCACAG
CAGACCACCGCCGCCTAAAAGCTTTCTAGACCAT

BS05226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1152 CG10888-PA 1..1152 17..1168 5760 100 Plus
Rh4-RA 1137 CG9668-PA 85..1071 113..1099 1320 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 24..1176 16..1168 5765 100 Plus
Rh4-RA 1349 CG9668-RA 132..1118 113..1099 1320 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081275..20082427 1168..16 5765 100 Minus
3L 28110227 3L 16852758..16853240 1099..617 1170 82.8 Minus
3L 28110227 3L 16862004..16862386 495..113 310 72.1 Minus
Blast to na_te.dros performed on 2014-11-28 00:06:58 has no hits.

BS05226.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:52 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:56 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..1179 16..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:04 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 25..1174 17..1166 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:52 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..1179 16..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:31 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 25..1174 17..1166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20081277..20082426 17..1166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:04 Download gff for BS05226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15906999..15908148 17..1166 100   Minus

BS05226.pep Sequence

Translation from 16 to 1167

> BS05226.pep
MESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHWLTY
PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
AFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAF
IAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVP
EGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFS
HEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPY
GVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
KRCPWLALNEKAPESSAVASTSTTQEPQQTTAA*

BS05226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-PA 383 CG10888-PA 1..383 1..383 2039 100 Plus
Rh4-PA 378 CG9668-PA 12..378 18..383 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 25..366 31..376 839 45.4 Plus
Rh5-PA 382 CG5279-PA 25..366 31..376 839 45.4 Plus
Rh2-PA 381 CG16740-PA 1..376 1..376 609 38.4 Plus