Clone Sequence Records
BS05226.3prime Sequence
862 bp (825 high quality bases) assembled on 2005-12-02
> BS05226.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCGGTGGTCTGCTGTGGTTCCTGGGTG
GTGCTGGTGGAGGCGACAGCCGACGATTCCGGCGCCTTTTCGTTGAGCGC
CAGCCAGGGACATCGCTTCTGCAGCTCCATGCGGTATCTGGGATGACTTA
TGGCGTACACGAACGGATCGATGCAGGCCACCATTTTGCAGGCACAGGCG
GGAATCATTGTGGCTCCGGGCGTCAAAAGGGTCTTATCCCCAAAGGCGCC
AATCAGCGACATAACTCCGTACGGCGTCCACGAGCAAAAGAACAGGAAGC
ATATGGTGATGGCCGCTTTGGCTATCCGGATTTCCGCCGTCTCCTTGTTT
TTGTCCACATTCGAACGCAGCGATTCCACGTTCATCTTCTTGGCCTGATC
CCGCAGTGCTTTCTCGTGGCTAAAGACATGGCCCACAATCTGGGAGTAGT
AGTACGTGATCATCGTGGTGGGACACACGAAGCTGAAGAAGAAGATGCAG
GCCACAAAGAGTCGCGTATCGAAGTTATCGGTGAGATAGTCAAAGGTGCA
GGATGTCAGATATCCCTCCGGCACAAAACGGCCCCAAGTCTCCGTGTAGC
AGGCAACCACCCATGGAGTGGCGTACATGTAGATGAATATGATCATGGCA
ATGGCCTTGCCATGCGTCATCTTGCCCTCCATGGGTCGAGTGATCACATT
GAATCGATCGTAGGCTATAAACGCATTGGTGGCACCGGCAGCGATTCCCG
TATAGGAGCCAATGATTCCAAAGATCTGGCATCCCAGATGACCCAGCGCA
TATCCCTGGTGGAAGCTATTGTAGATGAATATCGGAGTCTTGACCATCAT
CATGAAGTCGCA
BS05226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10888-PA | 1152 | Rh3-RA | 307..1152 | 862..17 | 4230 | 100 | Minus |
CG9668-PA | 1137 | Rh4-RA | 703..869 | 454..288 | 310 | 87.4 | Minus |
CG9668-PA | 1137 | Rh4-RA | 965..1057 | 192..100 | 215 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 331..1176 | 862..17 | 4230 | 100 | Minus |
Rh4-RA | 1349 | CG9668-RA | 361..1118 | 843..86 | 1270 | 78.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081275..20082120 | 17..862 | 4230 | 100 | Plus |
3L | 28110227 | 3L | 16852758..16853240 | 86..568 | 1170 | 82.8 | Plus |
3L | 28110227 | 3L | 16862004..16862157 | 690..843 | 185 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:30:43 has no hits.
BS05226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:03 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-PA | 308..1152 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:36 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10888-PA | 308..1152 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:47 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 332..1179 | 13..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:01 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 332..1179 | 13..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:01 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081272..20082119 | 13..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:47 Download gff for
BS05226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15906994..15907841 | 13..861 | 99 | | Plus |
BS05226.5prime Sequence
930 bp (830 high quality bases) assembled on 2005-11-29
> BS05226.5prime
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGGAGTTATGTCGC
BS05226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10888-PA | 1152 | Rh3-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
CG9668-PA | 1137 | Rh4-RA | 703..869 | 731..897 | 310 | 87.4 | Plus |
CG5192-PB | 1156 | Rh6-RB | 260..291 | 309..340 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 24..937 | 16..930 | 4550 | 99.9 | Plus |
Rh4-RA | 1349 | CG9668-RA | 132..948 | 113..930 | 960 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081514..20082427 | 930..16 | 4525 | 99.9 | Minus |
3L | 28110227 | 3L | 16852939..16853240 | 918..617 | 730 | 82.8 | Minus |
3L | 28110227 | 3L | 16862004..16862386 | 495..113 | 310 | 72.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:22:46 has no hits.
BS05226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:04 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-PA | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:38 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10888-PA | 1..913 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:11 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..937 | 16..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:06 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..937 | 16..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:06 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081514..20082427 | 16..930 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:11 Download gff for
BS05226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15907236..15908149 | 16..930 | 99 | | Minus |
BS05226.complete Sequence
1184 bp (1184 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635078
> BS05226.complete
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGAGTTATGTCGCTGATTGGCGCCTTTGGGGATA
AGACCCTTTTGACGCCCGGAGCCACAATGATTCCCGCCTGTGCCTGCAAA
ATGGTGGCCTGCATCGATCCGTTCGTGTACGCCATAAGTCATCCCAGATA
CCGCATGGAGCTGCAGAAGCGATGTCCCTGGCTGGCGCTCAACGAAAAGG
CGCCGGAATCGTCGGCTGTCGCCTCCACCAGCACCACCCAGGAACCACAG
CAGACCACCGCCGCCTAAAAGCTTTCTAGACCAT
BS05226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1152 | CG10888-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Rh4-RA | 1137 | CG9668-PA | 85..1071 | 113..1099 | 1320 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 24..1176 | 16..1168 | 5765 | 100 | Plus |
Rh4-RA | 1349 | CG9668-RA | 132..1118 | 113..1099 | 1320 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081275..20082427 | 1168..16 | 5765 | 100 | Minus |
3L | 28110227 | 3L | 16852758..16853240 | 1099..617 | 1170 | 82.8 | Minus |
3L | 28110227 | 3L | 16862004..16862386 | 495..113 | 310 | 72.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:06:58 has no hits.
BS05226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:52 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:56 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..1179 | 16..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:04 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 25..1174 | 17..1166 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:52 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..1179 | 16..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:31 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 25..1174 | 17..1166 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:31 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081277..20082426 | 17..1166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:04 Download gff for
BS05226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15906999..15908148 | 17..1166 | 100 | | Minus |
BS05226.pep Sequence
Translation from 16 to 1167
> BS05226.pep
MESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHWLTY
PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
AFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAF
IAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVP
EGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFS
HEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPY
GVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
KRCPWLALNEKAPESSAVASTSTTQEPQQTTAA*
BS05226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-PA | 383 | CG10888-PA | 1..383 | 1..383 | 2039 | 100 | Plus |
Rh4-PA | 378 | CG9668-PA | 12..378 | 18..383 | 1459 | 74.2 | Plus |
Rh5-PB | 382 | CG5279-PB | 25..366 | 31..376 | 839 | 45.4 | Plus |
Rh5-PA | 382 | CG5279-PA | 25..366 | 31..376 | 839 | 45.4 | Plus |
Rh2-PA | 381 | CG16740-PA | 1..376 | 1..376 | 609 | 38.4 | Plus |