Clone Sequence Records
BS05227.3prime Sequence
941 bp (853 high quality bases) assembled on 2005-12-02
> BS05227.3prime
ATGGTCTAGAAAGCTTTTAGCAGGCTATGTCCGTGGTCACGCTCTTGATG
CTCTCCGAGCTGAAGTGCACGCAGCCGTACTTGCAGACCAACGTCCACAC
ATATGGAATGAAGAACTCCTCGGGAGCGTCCTCCTCGACGTACTTAAACT
TAAGATCCGGGAACTTTCTCAGTCGATCGCTGGACCACTGACTGGCACCT
TTAGATATAACCTCGAGCACTTCATTGACCCCAAGCTCGCCTCTCTGCTC
CTGGACACGCTGCAGACGCGAGGAGAAGAAACCGACAACCATGTCTATGT
TTTGGATGACATCCTGGAAGGCGTGGTGACTGCGGAAGCCCTCGAAGACG
CTGCGCTTGTACAAAAGAGTGTACACCAAGTTGGGACAGTAGACCAACTG
GTTTGTGAGGCAGGAGTTTAGGATTTCCAGCACCATGCGCAACACCTCCT
CCAGCACGCTCAGATCTTGTAGCATGTCTTCCGGGGTCGTCGAGACGTTC
ACAAACACTGCGCTATCGGCCGGCTCCTTGAGCTGCGCATCCAGGCGCGT
ATGCTTCCGAGCGAGCGTTTCGAACAGCGAGACCAGTCGCTGTGCCACGT
AAGGGTGTAGAGCGCGGAAGTGGCCGGACATGTTGGCCAGCGCCGCCAGG
CAATTGGTGTGCAAGTACTTGTCGCGCATCTTCAGCATGTTGTACTGTAT
GGTGCGGATGACGATAAGGATTAGGATGCCGCCCAGCGATATCTCCGATA
TGGTGCGTTCCGTATACCATGTGATGTTTTTTAGCATTATGGTGTGCACA
TTCTTGTTGAAGCCCTCGTCTTCACTCAGGATCAGCAGCACGATCAAGGA
CATGTAGATGTGATGTGAGTTGCTATCGGGGGCGTTGTACAGTGTCTGGA
GGATGGGGATCACCAACTGCTCCAAGTCCTGTTGCTGCATG
BS05227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 2100 | CG8230-RA | 1176..2100 | 941..17 | 4625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 1249..2173 | 941..17 | 4625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8945308..8945807 | 288..787 | 2500 | 100 | Plus |
| 2R | 25286936 | 2R | 8945864..8946017 | 788..941 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 8944906..8945055 | 17..166 | 750 | 100 | Plus |
| 2R | 25286936 | 2R | 8945128..8945251 | 167..290 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:05:37 has no hits.
BS05227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:05 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1176..2100 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:39 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1176..2100 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:32 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 1249..2178 | 10..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:37 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 1249..2178 | 10..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:37 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8945864..8946017 | 788..941 | 100 | | Plus |
| 2R | 8944901..8945055 | 10..166 | 98 | <- | Plus |
| 2R | 8945128..8945250 | 167..289 | 100 | <- | Plus |
| 2R | 8945310..8945807 | 290..787 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:32 Download gff for
BS05227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4832406..4832560 | 10..166 | 98 | <- | Plus |
| arm_2R | 4832633..4832755 | 167..289 | 100 | <- | Plus |
| arm_2R | 4832815..4833312 | 290..787 | 100 | <- | Plus |
| arm_2R | 4833369..4833522 | 788..941 | 100 | | Plus |
BS05227.5prime Sequence
893 bp (839 high quality bases) assembled on 2005-12-02
> BS05227.5prime
GAAGTTATCAGTCGACATGGGCATCAACGTCAGCAGGACGGCCGACCTGG
GGTCCAACCAGTGGCTCCAGCGCTTCGTGGGCCGCCAGCACATCGCCCAC
GATGACGAGGCCTTCTGGAACGGGCTGCTCAACTACAACATTGTGCTGCC
GGAGAACAGTCAGGACCAGCTCAACCTGGACAGCCGGCTAGAGGCGCTGT
GCCAGTCGTTCATCGGCAATAACCTGAAGACGGGCAACTTTGGCTCCCTG
GTGACCGTGTTCCTGGAGAAGACCAGCGAGCTGCTGTCGCTGTCGGACCA
GGAAAGCAACATGCACGTCTGGCAGACCTTCAACGCGCTCTTCATCATCC
GCAGCCTGGTCAAGTACATCAACGAGACGGGCTCTGAGTTCCAGCTGCTG
CAGCACTTTGAGGCTATGCCGAATGCAGAGCTGCTGCAAGCGGCATTGGA
GCAGCAGCAACAGACGCCGGCGGAGAGCGCCACCATTGCCATGGAGGCCA
CCGAACAGTCGGCGGCGGCTGCGGTTCCAGTGATTGTGGACGGATCTAAG
TTTGAGACCTTCATCGATGCCCTGGTGAACCTAATCGTCGTGATTCCCGT
CAAGGAGTTCACCTACCACCTGCACCTAGAGGCCGTTAACATGCTGATCA
CCCTGCTGTCAGTGCATCTGTTTGCCCAACAGCCCACGGACAAGTCCATC
GTGTTCCGGACGGTCTTCAAGTGTCAGCACGCAAACGTGCTGATGTCGGC
ACTGCTGCATTTTGTGGCGCGTATTGTGGAGGTGCCGCACACCATGTTTG
GGTCCAGCTCTGCTGGATCCTTTGTCTTTGGCATCGCGGAGTCGCTGCTT
TCCATCTTCACGTTCCGTAAGCAGCCAGACATACTGAAAAGCG
BS05227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 2100 | CG8230-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 74..946 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8946320..8947052 | 889..157 | 3665 | 100 | Minus |
| 2R | 25286936 | 2R | 8947129..8947271 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:07:30 has no hits.
BS05227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:06 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:41 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:07:55 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 72..949 | 14..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:45 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 72..949 | 14..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:45 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8946317..8947049 | 160..893 | 99 | <- | Minus |
| 2R | 8947129..8947273 | 14..159 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:07:55 Download gff for
BS05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4833822..4834554 | 160..893 | 99 | <- | Minus |
| arm_2R | 4834634..4834778 | 14..159 | 99 | | Minus |
BS05227.complete Sequence
2132 bp assembled on 2009-12-07
GenBank Submission: KX798889
> BS05227.complete
GAAGTTATCAGTCGACATGGGCATCAACGTCAGCAGGACGGCCGACCTGG
GGTCCAACCAGTGGCTCCAGCGCTTCGTGGGCCGCCAGCACATCGCCCAC
GATGACGAGGCCTTCTGGAACGGGCTGCTCAACTACAACATTGTGCTGCC
GGAGAACAGTCAGGACCAGCTCAACCTGGACAGCCGGCTAGAGGCGCTGT
GCCAGTCGTTCATCGGCAATAACCTGAAGACGGGCAACTTTGGCTCCCTG
GTGACCGTGTTCCTGGAGAAGACCAGCGAGCTGCTGTCGCTGTCGGACCA
GGAAAGCAACATGCACGTCTGGCAGACCTTCAACGCGCTCTTCATCATCC
GCAGCCTGGTCAAGTACATCAACGAGACGGGCTCTGAGTTCCAGCTGCTG
CAGCACTTTGAGGCTATGCCGAATGCAGAGCTGCTGCAAGCGGCATTGGA
GCAGCAGCAACAGACGCCGGCGGAGAGCGCCACCATTGCCATGGAGGCCA
CCGAACAGTCGGCGGCGGCTGCGGTTCCAGTGATTGTGGACGGATCTAAG
TTTGAGACCTTCATCGATGCCCTGGTGAACCTAATCGTCGTGATTCCCGT
CAAGGAGTTCACCTACCACCTGCACCTAGAGGCCGTTAACATGCTGATCA
CCCTGCTGTCAGTGCATCTGTTTGCCCAACAGCCCACGGACAAGTCCATC
GTGTTCCGGACGGTCTTCAAGTGTCAGCACGCAAACGTGCTGATGTCGGC
ACTGCTGCATTTTGTGGCGCGTATTGTGGAGGTGCCGCACACCATGTTTG
GGTCCAGCTCTGCTGGATCCTTTGTCTTTGGCATCGCGGAGTCGCTGCTT
TCCATCTTCACGTTCCGTAAGCAGCCAGACATACTGAAAGCGGGCCAAGC
AGCCGGCGGTGGAGAGCTCTCGCAGCGATTCCGTACCCACTACCCACTGG
CCAACCAGAGCCTGTTGCTGATCCTGATACTGACTAACCACTGCACGGCA
CAGGATAACGCCTATCGGACTAGCCTTTTCAGTTGCGCCGATTCAAAGGA
TTCACCAAAACAGGGAGCTGTCTCCTTCCAGATCGACTTCTCGGCGGTAT
ATGAGACATTGTGTACCATCGTTACCATCGACCAGGCCACGCTGCTGCTC
TATCTGCTGCTCCATCGCAACGAGCGCTTCTACCGGTTCGTCATGCAGCA
ACAGGACTTGGAGCAGTTGGTGATCCCCATCCTCCAGACACTGTACAACG
CCCCCGATAGCAACTCACATCACATCTACATGTCCTTGATCGTGCTGCTG
ATCCTGAGTGAAGACGAGGGCTTCAACAAGAATGTGCACACCATAATGCT
AAAAAACATCACATGGTATACGGAACGCACCATATCGGAGATATCGCTGG
GCGGCATCCTAATCCTTATCGTCATCCGCACCATACAGTACAACATGCTG
AAGATGCGCGACAAGTACTTGCACACCAATTGCCTGGCGGCGCTGGCCAA
CATGTCCGGCCACTTCCGCGCTCTACACCCTTACGTGGCACAGCGACTGG
TCTCGCTGTTCGAAACGCTCGCTCGGAAGCATACGCGCCTGGATGCGCAG
CTCAAGGAGCCGGCCGATAGCGCAGTGTTTGTGAACGTCTCGACGACCCC
GGAAGACATGCTACAAGATCTGAGCGTGCTGGAGGAGGTGTTGCGCATGG
TGCTGGAAATCCTAAACTCCTGCCTCACAAACCAGTTGGTCTACTGTCCC
AACTTGGTGTACACTCTTTTGTACAAGCGCAGCGTCTTCGAGGGCTTCCG
CAGTCACCACGCCTTCCAGGATGTCATCCAAAACATAGACATGGTTGTCG
GTTTCTTCTCCTCGCGTCTGCAGCGTGTCCAGGAGCAGAGAGGCGAGCTT
GGGGTCAATGAAGTGCTCGAGGTTATATCTAAAGGTGCCAGTCAGTGGTC
CAGCGATCGACTGAGAAAGTTCCCGGATCTTAAGTTTAAGTACGTCGAGG
AGGACGCTCCCGAGGAGTTCTTCATTCCATATGTGTGGACGTTGGTCTGC
AAGTACGGCTGCGTGCACTTCAGCTCGGAGAGCATCAAGAGCGTGACCAC
GGACATAGCCTGCTAAAAGCTTTCTAGACCAT
BS05227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2100 | CG8230-PA | 1..2100 | 17..2116 | 10500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 74..2173 | 17..2116 | 10500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8945864..8947052 | 1345..157 | 5945 | 100 | Minus |
| 2R | 25286936 | 2R | 8945308..8945807 | 1845..1346 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 8944906..8945055 | 2116..1967 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 8947129..8947271 | 159..17 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 8945128..8945251 | 1966..1843 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:13:45 has no hits.
BS05227.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:54 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 91..2188 | 17..2114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:11 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 74..2171 | 17..2114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:33 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 91..2188 | 17..2114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:41 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 74..2171 | 17..2114 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:41 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8944908..8945055 | 1967..2114 | 100 | <- | Minus |
| 2R | 8945128..8945250 | 1844..1966 | 100 | <- | Minus |
| 2R | 8945310..8945807 | 1346..1843 | 100 | <- | Minus |
| 2R | 8945864..8947049 | 160..1345 | 100 | <- | Minus |
| 2R | 8947129..8947271 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:11 Download gff for
BS05227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4832413..4832560 | 1967..2114 | 100 | <- | Minus |
| arm_2R | 4832633..4832755 | 1844..1966 | 100 | <- | Minus |
| arm_2R | 4832815..4833312 | 1346..1843 | 100 | <- | Minus |
| arm_2R | 4833369..4834554 | 160..1345 | 100 | <- | Minus |
| arm_2R | 4834634..4834776 | 17..159 | 100 | | Minus |
BS05227.pep Sequence
Translation from 16 to 2115
> BS05227.pep
MGINVSRTADLGSNQWLQRFVGRQHIAHDDEAFWNGLLNYNIVLPENSQD
QLNLDSRLEALCQSFIGNNLKTGNFGSLVTVFLEKTSELLSLSDQESNMH
VWQTFNALFIIRSLVKYINETGSEFQLLQHFEAMPNAELLQAALEQQQQT
PAESATIAMEATEQSAAAAVPVIVDGSKFETFIDALVNLIVVIPVKEFTY
HLHLEAVNMLITLLSVHLFAQQPTDKSIVFRTVFKCQHANVLMSALLHFV
ARIVEVPHTMFGSSSAGSFVFGIAESLLSIFTFRKQPDILKAGQAAGGGE
LSQRFRTHYPLANQSLLLILILTNHCTAQDNAYRTSLFSCADSKDSPKQG
AVSFQIDFSAVYETLCTIVTIDQATLLLYLLLHRNERFYRFVMQQQDLEQ
LVIPILQTLYNAPDSNSHHIYMSLIVLLILSEDEGFNKNVHTIMLKNITW
YTERTISEISLGGILILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF
RALHPYVAQRLVSLFETLARKHTRLDAQLKEPADSAVFVNVSTTPEDMLQ
DLSVLEEVLRMVLEILNSCLTNQLVYCPNLVYTLLYKRSVFEGFRSHHAF
QDVIQNIDMVVGFFSSRLQRVQEQRGELGVNEVLEVISKGASQWSSDRLR
KFPDLKFKYVEEDAPEEFFIPYVWTLVCKYGCVHFSSESIKSVTTDIAC*
BS05227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 699 | CG8230-PA | 1..699 | 1..699 | 3561 | 100 | Plus |
