Clone BS05228 Report

Search the DGRC for BS05228

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:28
Vector:pDNR-Dual
Associated Gene/Transcripthoe1-RA
Protein status:BS05228.pep: full length peptide match
Sequenced Size:2444

Clone Sequence Records

BS05228.complete Sequence

2444 bp assembled on 2009-12-07

GenBank Submission: KX797666

> BS05228.complete
GAAGTTATCAGTCGACATGGCCTACAATCCCAACAGCAGCGCCGAGGATA
ACGCATACGAGGATGACGAAGTAACAGAAGGTGCCTTACAGGTCTGGCGG
ACCCTGCCGGAGCGCATTCGTCAGGATCCCAGTCTAGCCTCCTTTCGCCA
GGAGCACGAACGTCTGCATGGCGATGTGGACCAGCTGCACGCGGAGGAGT
CGGAATTGCGTGTGCAGAATGGACACCACGAGGAGACGGCGCTGGCCAAC
CAGCCATTCACACAGATCGGGATCAATGTGACGAACGAGGCGGGTCAGGT
GCGGGTGCTCGATGGCAGGGATCTGGAGAATAACAACGATGATCAACACG
ACGAGGCCGAGCCGCATGCCAAGAGTTTGATACGAAAGTATCTCATCTGG
TTTAAGATAGCCATACTCCTGGTGGTCTGGTGCGTCTTCACCGCCTTCCT
GATGTCCAACAACGAGCATGTGGACCAACTGAGCCTCATTAGTGTTCCTA
GGAATAGCTCACCCAGAGTATTTCCCATTGCCACCGCCAGTCTGCAGAGG
ATTGGCCTGGGCCTGCGCGGACCCTTCCGCCTGCAGGAGAACGAACTGGC
CATTAACGCGAGTGTTCCACTGCCCCTGCTCCAGGTGCAGGTGATGCGCA
GCTATTTCGATGGCGAGGGCATGGAGATCTACATCGAGAACGCCAGCCAG
GTGTGGCAACTGGACGTGGTCTATCCCGATCTGATAGACGCCACCAGGGA
TACGAAGAAGCAGCGTACCTTCGAGCTGAGTCCCACTGATCCCTTATGGT
TGGCCCAGGCCAATCGCACGGAGCTGAGCTTCGAGTTCACCAGCTCCATT
GAGGGCGAATTGCCGCTCCAACTGAATGTGGATGAGTCGCCCATCTATAA
GCGGGATGGAGTCATCTATGCTGCGGCTGTGCTCTGCGGCTTGTACGTGA
TGATCATCTGGGAGATTGTGAATCGAACCTTTGCTGCCATCATCGCATCC
ACCTTGTCGGTTGGTATACTGGCTGCACTGAACTCCAGGCCCTCGATGGC
CACCATCATGGGTTGGATTGATGTGGAGACACTGCTGCTGCTCTTCGGCA
TGATGATTCTGGTGGCCATTCTCTCCGAGACGGGAGTCTTTGACTATCTG
GCTGTGTATGCCTACAAGATAACCAACGGACATGTTTGGCCACTCATCAA
TTGCCTCTGCCTGTTCACCGCTGTCCTGTCGTCCTTCCTGGACAATGTGA
CCACCGTGCTGCTGATGACCCCGGTGACGATACGACTCTGCGAGGTCATG
TGCCTCAATCCGGTGCCCATACTCATGTGCATGGTCATCTACTCGAACAT
TGGCGGTGCACTGACTCCAGTGGGGGATCCGCCCAATGTCATCATAGCCT
CGAATAGCTACATATCCAAAAATGGCGTCAATTTTGCTGTCTTCACCTTG
CACATGCTGCCCGGAGTTCTGCTGGTGATGGTGCAGACCTATATCCAGTT
GCGTTTCAAGTTTCGCAACATCAGTGATCTGCAGTTCAAGGACTCGCCGG
AGGTGGAGGAACTGCGTCACGAGATACACGTATGGAAGCGGGCAGCCGCC
AGTCTATCTGCCTATTCCAAGGATGAGGAACTGGTGCGGCAGACACTGAT
GAAGAAGGTGAATCGCTTGAAGAGAAGCCTCAAGAAACGCATGACGGCGG
TCATAGAACCGGCACCCAATTACCAACAAACTCTGGCCAATCTTCAGGCA
AAGTACCCCATTCGCAACAAACCGCTGCTGATCAAGTGTTCGGCCGCCTT
GGTCTTTGTGATCAGTTTGTTTTTCCTGCACTCGGTACCCGAACTCCAGA
GACTGTCTTTAGGATGGACCGCTCTGCTGGGTGCCATATTCCTCATCATT
CTGGCGGACATCGAGGACATGGAGGCCATACTGGCACGCGTGGAATGGTC
CACGCTGCTCTTCTTCGCAGCTCTGTTTATTCTCATGGAAGCCCTGACGG
AACTGGGACTGATTGAGTGGATCGGCAACATGACAGAGGGCATTATCCTG
GGAGTTGGCGAGGATCGGCGACTGATGGTGGCCATTTTGATCATTCTATG
GGTTTCCGCTGTGGCTTCCGCTTTTGTGGACAACATACCGCTGACCACGA
TGATGGTCAAGATCACCATATCACTGGCGCAGAATAGCACCTTGAATCTG
CCACTACAGCCTCTGGTTTGGGCCCTGGCCTTGGGCGCCTGTTTGGGAGG
CAATGGCACTCTGATCGGAGCCTCTGCCAATGTGGTTTGTGCCGGCGTGG
CGGAGCAGCACGGCTACAAGTTCACCTTCCTGCAGTTCTTCAAAGTTGGA
TTTCCCATCATGATCGGCAGCATCATTGTCACCACGGGCTATCTGCTCGT
TTCGCATTCGCTGTTCGCGTGGCATTGAAAGCTTTCTAGACCAT

BS05228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
hoe1-RA 2412 CG12787-PA 1..2412 17..2428 12060 100 Plus
hoe1-RI 2439 CG12787-PI 77..2439 66..2428 11815 100 Plus
hoe1-RE 2439 CG12787-PE 77..2439 66..2428 11815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
hoe1-RA 3246 CG12787-RA 407..2818 17..2428 12060 100 Plus
hoe1-RI 3462 CG12787-RI 672..3034 66..2428 11815 100 Plus
hoe1-RE 3512 CG12787-RE 722..3084 66..2428 11815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4910468..4911513 1424..379 5230 100 Minus
2L 23513712 2L 4909676..4910027 2103..1752 1760 100 Minus
2L 23513712 2L 4910083..4910412 1753..1424 1650 100 Minus
2L 23513712 2L 4909475..4909624 2250..2101 750 100 Minus
2L 23513712 2L 4911722..4911868 319..173 735 100 Minus
2L 23513712 2L 4912672..4912778 173..67 535 100 Minus
2L 23513712 2L 4909315..4909410 2343..2248 480 100 Minus
2L 23513712 2L 4909170..4909254 2428..2344 425 100 Minus
2L 23513712 2L 4911581..4911645 379..315 325 100 Minus
2L 23513712 2L 4915047..4915096 66..17 250 100 Minus
Blast to na_te.dros performed 2014-11-28 02:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 3106..3166 1427..1367 125 67.2 Minus

BS05228.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:11 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 401..2811 17..2427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:15 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 407..2817 17..2427 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:05 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 401..2811 17..2427 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:38 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 407..2817 17..2427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:38 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4915047..4915096 17..66 100   Minus
2L 4909171..4909254 2344..2427 100 <- Minus
2L 4909315..4909408 2250..2343 100 <- Minus
2L 4909476..4909623 2102..2249 100 <- Minus
2L 4909678..4910025 1754..2101 100 <- Minus
2L 4910083..4910412 1424..1753 100 <- Minus
2L 4910469..4911512 380..1423 100 <- Minus
2L 4911581..4911641 319..379 100 <- Minus
2L 4911723..4911867 174..318 100 <- Minus
2L 4912672..4912778 67..173 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:15 Download gff for BS05228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4909476..4909623 2102..2249 100 <- Minus
arm_2L 4909171..4909254 2344..2427 100 <- Minus
arm_2L 4909315..4909408 2250..2343 100 <- Minus
arm_2L 4909678..4910025 1754..2101 100 <- Minus
arm_2L 4910083..4910412 1424..1753 100 <- Minus
arm_2L 4910469..4911512 380..1423 100 <- Minus
arm_2L 4911581..4911641 319..379 100 <- Minus
arm_2L 4911723..4911867 174..318 100 <- Minus
arm_2L 4912672..4912778 67..173 100 <- Minus
arm_2L 4915047..4915096 17..66 100   Minus

BS05228.3prime Sequence

937 bp (877 high quality bases) assembled on 2005-12-02

> BS05228.3prime
ATGGTCTAGAAAGCTTTCAATGCCACGCGAACAGCGAATGCGAAACGAGC
AGATAGCCCGTGGTGACAATGATGCTGCCGATCATGATGGGAAATCCAAC
TTTGAAGAACTGCAGGAAGGTGAACTTGTAGCCGTGCTGCTCCGCCACGC
CGGCACAAACCACATTGGCAGAGGCTCCGATCAGAGTGCCATTGCCTCCC
AAACAGGCGCCCAAGGCCAGGGCCCAAACCAGAGGCTGTAGTGGCAGATT
CAAGGTGCTATTCTGCGCCAGTGATATGGTGATCTTGACCATCATCGTGG
TCAGCGGTATGTTGTCCACAAAAGCGGAAGCCACAGCGGAAACCCATAGA
ATGATCAAAATGGCCACCATCAGTCGCCGATCCTCGCCAACTCCCAGGAT
AATGCCCTCTGTCATGTTGCCGATCCACTCAATCAGTCCCAGTTCCGTCA
GGGCTTCCATGAGAATAAACAGAGCTGCGAAGAAGAGCAGCGTGGACCAT
TCCACGCGTGCCAGTATGGCCTCCATGTCCTCGATGTCCGCCAGAATGAT
GAGGAATATGGCACCCAGCAGAGCGGTCCATCCTAAAGACAGTCTCTGGA
GTTCGGGTACCGAGTGCAGGAAAAACAAACTGATCACAAAGACCAAGGCG
GCCGAACACTTGATCAGCAGCGGTTTGTTGCGAATGGGGTACTTTGCCTG
AAGATTGGCCAGAGTTTGTTGGTAATTGGGTGCCGGTTCTATGACCGCCG
TCATGCGTTTCTTGAGGCTTCTCTTCAAGCGATTCACCTTCTTCATCAGT
GTCTGCCGCACCAGTTCCTCATCCTTGGAATAGGCAGATAGACTGGCGGC
TGCCCGCTTCCATACGTGTATCTCGTGACGCAGTTCCTCCACCTCCGGCG
AGTCCTTGAACTGCAGATCACTGATGTTGCGAAACTT

BS05228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12787-PB 2439 hoe1-RB 1519..2439 937..17 4605 100 Minus
CG12787-PF 2439 hoe1-RF 1519..2439 937..17 4605 100 Minus
CG12787-PD 2439 hoe1-RD 1519..2439 937..17 4605 100 Minus
CG12787-PE 2439 hoe1-RE 1519..2439 937..17 4605 100 Minus
CG12787-PA 2412 hoe1-RA 1492..2412 937..17 4605 100 Minus
CG12787-PC 2541 hoe1-RC 1621..2541 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
hoe1-RJ 3422 CG12787-RJ 1913..2833 937..17 4605 100 Minus
hoe1-RI 3462 CG12787-RI 2114..3034 937..17 4605 100 Minus
hoe1-RH 3534 CG12787-RH 2186..3106 937..17 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4909676..4910027 342..693 1760 100 Plus
2L 23513712 2L 4910083..4910328 692..937 1230 100 Plus
2L 23513712 2L 4909475..4909624 195..344 750 100 Plus
2L 23513712 2L 4909315..4909410 102..197 480 100 Plus
2L 23513712 2L 4909170..4909254 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:34:35 has no hits.

BS05228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:07 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-PD 1519..2439 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:43 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12787-PC 1621..2541 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:15:18 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-RC 1831..2751 17..937 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:41 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-RH 2186..3106 17..937 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:41 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4909315..4909408 102..195 100 <- Plus
2L 4909476..4909623 196..343 100 <- Plus
2L 4909170..4909254 17..101 100 <- Plus
2L 4909678..4910025 344..691 100 <- Plus
2L 4910083..4910328 692..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:15:18 Download gff for BS05228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4909170..4909254 17..101 100 <- Plus
arm_2L 4909315..4909408 102..195 100 <- Plus
arm_2L 4909476..4909623 196..343 100 <- Plus
arm_2L 4909678..4910025 344..691 100 <- Plus
arm_2L 4910083..4910328 692..937 100   Plus

BS05228.5prime Sequence

895 bp (798 high quality bases) assembled on 2005-12-02

> BS05228.5prime
GAAGTTATCAGTCGACATGGCCTACAATCCCAACAGCAGCGCCGAGGATA
ACGCATACGAGGATGACGAAGTAACAGAAGGTGCCTTACAGGTCTGGCGG
ACCCTGCCGGAGCGCATTCGTCAGGATCCCAGTCTAGCCTCCTTTCGCCA
GGAGCACGAACGTCTGCATGGCGATGTGGACCAGCTGCACGCGGAGGAGT
CGGAATTGCGTGTGCAGAATGGACACCACGAGGAGACGGCGCTGGCCAAC
CAGCCATTCACACAGATCGGGATCAATGTGACGAACGAGGCGGGTCAGGT
GCGGGTGCTCGATGGCAGGGATCTGGAGAATAACAACGATGATCAACACG
ACGAGGCCGAGCCGCATGCCAAGAGTTTGATACGAAAGTATCTCATCTGG
TTTAAGATAGCCATACTCCTGGTGGTCTGGTGCGTCTTCACCGCCTTCCT
GATGTCCAACAACGAGCATGTGGACCAACTGAGCCTCATTAGTGTTCCTA
GGAATAGCTCACCCAGAGTATTTCCCATTGCCACCGCCAGTCTGCAGAGG
ATTGGCCTGGGCCTGCGCGGACCCTTCCGCCTGCAGGAGAACGAACTGGC
CATTAACGCGAGTGTTCCACTGCCCCTGCTCCAGGTGCAGGTGATGCGCA
GCTATTTCGATGGCGAGGGCATGGAGATCTACATCGAGAACGCCAGCCAG
GTGTGGCAACTGGACGTGGTCTATCCCGATCTGATAGACGCCACCAGGGA
TACGAAGAAGCAGCGTACCTTCGAGCTGAGTCCCACTGATCCCTTATGGT
TGGCCCAGGCCAATCGCACGGAGCTGAGCTTCGAGTTCACCAGCTCCATT
GAGGGCGAATTGCCGCTCCAACTGAATGTGGATGAGTCGCCCATC

BS05228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12787-PA 2412 hoe1-RA 1..879 17..895 4395 100 Plus
CG12787-PB 2439 hoe1-RB 77..906 66..895 4150 100 Plus
CG12787-PF 2439 hoe1-RF 77..906 66..895 4150 100 Plus
CG12787-PD 2439 hoe1-RD 77..906 66..895 4150 100 Plus
CG12787-PE 2439 hoe1-RE 77..906 66..895 4150 100 Plus
CG12787-PC 2541 hoe1-RC 180..1008 67..895 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
hoe1-RA 3246 CG12787-RA 407..1285 17..895 4395 100 Plus
hoe1-RI 3462 CG12787-RI 672..1501 66..895 4150 100 Plus
hoe1-RE 3512 CG12787-RE 722..1551 66..895 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4910997..4911513 895..379 2585 100 Minus
2L 23513712 2L 4911722..4911868 319..173 735 100 Minus
2L 23513712 2L 4912672..4912778 173..67 535 100 Minus
2L 23513712 2L 4911581..4911645 379..315 325 100 Minus
2L 23513712 2L 4915047..4915096 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:08:34 has no hits.

BS05228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:08 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:44 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12787-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:15:21 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 404..1285 10..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:19:31 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
hoe1-RA 404..1285 10..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:19:31 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4910997..4911512 380..895 100 <- Minus
2L 4911581..4911641 319..379 100 <- Minus
2L 4911723..4911867 174..318 100 <- Minus
2L 4912672..4912778 67..173 100 <- Minus
2L 4915047..4915099 10..66 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:15:21 Download gff for BS05228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4910997..4911512 380..895 100 <- Minus
arm_2L 4911581..4911641 319..379 100 <- Minus
arm_2L 4911723..4911867 174..318 100 <- Minus
arm_2L 4912672..4912778 67..173 100 <- Minus
arm_2L 4915047..4915099 10..66 92   Minus

BS05228.pep Sequence

Translation from 16 to 2427

> BS05228.pep
MAYNPNSSAEDNAYEDDEVTEGALQVWRTLPERIRQDPSLASFRQEHERL
HGDVDQLHAEESELRVQNGHHEETALANQPFTQIGINVTNEAGQVRVLDG
RDLENNNDDQHDEAEPHAKSLIRKYLIWFKIAILLVVWCVFTAFLMSNNE
HVDQLSLISVPRNSSPRVFPIATASLQRIGLGLRGPFRLQENELAINASV
PLPLLQVQVMRSYFDGEGMEIYIENASQVWQLDVVYPDLIDATRDTKKQR
TFELSPTDPLWLAQANRTELSFEFTSSIEGELPLQLNVDESPIYKRDGVI
YAAAVLCGLYVMIIWEIVNRTFAAIIASTLSVGILAALNSRPSMATIMGW
IDVETLLLLFGMMILVAILSETGVFDYLAVYAYKITNGHVWPLINCLCLF
TAVLSSFLDNVTTVLLMTPVTIRLCEVMCLNPVPILMCMVIYSNIGGALT
PVGDPPNVIIASNSYISKNGVNFAVFTLHMLPGVLLVMVQTYIQLRFKFR
NISDLQFKDSPEVEELRHEIHVWKRAAASLSAYSKDEELVRQTLMKKVNR
LKRSLKKRMTAVIEPAPNYQQTLANLQAKYPIRNKPLLIKCSAALVFVIS
LFFLHSVPELQRLSLGWTALLGAIFLIILADIEDMEAILARVEWSTLLFF
AALFILMEALTELGLIEWIGNMTEGIILGVGEDRRLMVAILIILWVSAVA
SAFVDNIPLTTMMVKITISLAQNSTLNLPLQPLVWALALGACLGGNGTLI
GASANVVCAGVAEQHGYKFTFLQFFKVGFPIMIGSIIVTTGYLLVSHSLF
AWH*

BS05228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
hoe1-PA 803 CG12787-PA 1..803 1..803 4094 100 Plus
hoe1-PI 812 CG12787-PI 16..812 7..803 4009 98.9 Plus
hoe1-PE 812 CG12787-PE 16..812 7..803 4009 98.9 Plus
hoe1-PD 812 CG12787-PD 16..812 7..803 4009 98.9 Plus
hoe1-PF 812 CG12787-PF 16..812 7..803 4009 98.9 Plus