Clone Sequence Records
BS05229.5prime Sequence
864 bp (794 high quality bases) assembled on 2005-12-02
> BS05229.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCGTGGGCAATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATA
CCGTGGGTCCTCGA
BS05229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 164..1012 | 16..864 | 4245 | 100 | Plus |
Vps4-RA | 2031 | CG6842-RA | 164..1012 | 16..864 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17908808..17909519 | 153..864 | 3560 | 100 | Plus |
X | 23542271 | X | 17908577..17908713 | 16..152 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:52:35 has no hits.
BS05229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:10 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:46 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:00 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 155..1011 | 7..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:10 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 155..1011 | 7..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:10 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17908568..17908713 | 5..152 | 96 | -> | Plus |
X | 17908808..17909518 | 153..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:00 Download gff for
BS05229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17802601..17802746 | 5..152 | 96 | -> | Plus |
arm_X | 17802841..17803551 | 153..863 | 100 | | Plus |
BS05229.3prime Sequence
922 bp (903 high quality bases) assembled on 2005-12-02
> BS05229.3prime
ATGGTCTAGAAAGCTTCTAGCCCTCCTGCCCAAAGTCCTCTGTGAATTTG
CGCAGCTTCTTCAGATCGTCTTCGTTGACGGTCGGTTTCGTGCGGGACAA
GGACTTCAGCATGTCGCGCATGGTCACGGGCGGTTCGAAGAGCTTGTCGC
TGGGCACATCCATCCAGTTCATCTCGACGGCGCCCTGGTCGCCAGGTGAG
CACGGAACCAGCAAATCGTTGACAATCTCCTCGTGGTTGGTGGGACTCGG
ACCGGATACCCGCTTGAAATGCGTGGCGGTCTGCACTTTCCTCACGGGTT
CCATCAGCGCATCGCGCACAACGATTGATATATCCGCGCCAGAGTAGCCC
TCGGTTTTGCCGGCCAACTCCTTGAGATCCTGCTCGGTGAGCACGTGCGT
GGTGTTGCCCAGATGGATCTTGAACATGACGAGGCGGGCATGCGCCTCCG
GCAGCGGAATGTAGATGCGCTTCTCGAATCGACGGCGAATGGCCGAGTCG
AGGACCCACGGTATGTTTGTGGCGCCGAGAACGAGAATGCCATCGGTGTC
ATTGCCCACGCCCTGCATCTGCACCAGAAACTCGGTCTTGATGCGTCGCA
CGCTGTCGTTCTCGTTGTCCGATCTCGCCGAGCACATCGAATCGATCTCG
TCAATGAAGATAATGGAGGGCTTGTGCTGGCGGGCCAGTTCGAAGAGATT
CTTGACCAGCTTCTCGGACTCGCCCAGCCACTTGGACATCAGATCCGAAC
TGGACACCGAGAAGAATGTGGAGCGATTGGCCTCGGTGGCGACGGCCTTG
GCCAGATAGGATTTACCGGTACCGGGCGGGCCGAACAGCAGGATGCCCTT
CCACGGAATCCGCTTGCCAGTGAAGAGCTGCGGGAATTTAATCGGCAGGA
TAACGGGCTCCTTCAGCGCCTC
BS05229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 424..1329 | 922..17 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 588..1494 | 922..16 | 4520 | 99.9 | Minus |
Vps4-RA | 2031 | CG6842-RA | 588..1494 | 922..16 | 4520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17909095..17909669 | 922..348 | 2860 | 99.8 | Minus |
X | 23542271 | X | 17909780..17910009 | 348..119 | 1150 | 100 | Minus |
X | 23542271 | X | 17910077..17910180 | 119..16 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:12:52 has no hits.
BS05229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:09 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 424..1329 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:45 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 424..1329 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:29 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 588..1494 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:23 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 588..1494 | 16..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:23 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17909095..17909669 | 348..922 | 99 | -> | Minus |
X | 17909781..17910009 | 119..347 | 100 | -> | Minus |
X | 17910078..17910180 | 16..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:29 Download gff for
BS05229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17803128..17803702 | 348..922 | 99 | -> | Minus |
arm_X | 17803814..17804042 | 119..347 | 100 | -> | Minus |
arm_X | 17804111..17804213 | 16..118 | 100 | | Minus |
BS05229.complete Sequence
1361 bp (1361 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635079
> BS05229.complete
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCGTGGGCAATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATA
CCGTGGGTCCTCGACTCGGCCATTCGCCGTCGATTCGAGAAGCGCATCTA
CATTCCGCTGCCGGAGGCGCATGCCCGCCTCGTCATGTTCAAGATCCATC
TGGGCAACACCACGCACGTGCTCACCGAGCAGGATCTCAAGGAGTTGGCC
GGCAAAACCGAGGGCTACTCTGGCGCGGATATATCAATCGTTGTGCGCGA
TGCGCTGATGGAACCCGTGAGGAAAGTGCAGACCGCCACGCATTTCAAGC
GGGTATCCGGTCCGAGTCCCACCAACCACGAGGAGATTGTCAACGATTTG
CTGGTTCCGTGCTCACCTGGCGACCAGGGCGCCGTCGAGATGAACTGGAT
GGATGTGCCCAGCGACAAGCTCTTCGAACCGCCCGTGACCATGCGCGACA
TGCTGAAGTCCTTGTCCCGCACGAAACCGACCGTCAACGAAGACGATCTG
AAGAAGCTGCGCAAATTCACAGAGGACTTTGGGCAGGAGGGCTAGAAGCT
TTCTAGACCAT
BS05229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 1329 | CG6842-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Vps4-RA | 1329 | CG6842-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 164..1494 | 16..1346 | 6655 | 100 | Plus |
Vps4-RA | 2031 | CG6842-RA | 164..1494 | 16..1346 | 6655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17908808..17909669 | 153..1014 | 4310 | 100 | Plus |
X | 23542271 | X | 17909780..17910009 | 1014..1243 | 1150 | 100 | Plus |
X | 23542271 | X | 17908577..17908713 | 16..152 | 685 | 100 | Plus |
X | 23542271 | X | 17910077..17910180 | 1243..1346 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:27 has no hits.
BS05229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:54 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:58 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 160..1499 | 7..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:06 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 165..1493 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:54 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 160..1499 | 7..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:51 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 165..1493 | 17..1345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:51 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17908578..17908713 | 17..152 | 100 | -> | Plus |
X | 17909781..17910009 | 1015..1243 | 100 | -> | Plus |
X | 17910078..17910179 | 1244..1345 | 100 | | Plus |
X | 17908808..17909669 | 153..1014 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:06 Download gff for
BS05229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17802611..17802746 | 17..152 | 100 | -> | Plus |
arm_X | 17802841..17803702 | 153..1014 | 100 | -> | Plus |
arm_X | 17803814..17804042 | 1015..1243 | 100 | -> | Plus |
arm_X | 17804111..17804212 | 1244..1345 | 100 | | Plus |
BS05229.pep Sequence
Translation from 16 to 1344
> BS05229.pep
MAAGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQG
EKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSD
SDDEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVIL
PIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSS
DLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVR
RIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
AHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEP
VRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSD
KLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG*
BS05229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-PB | 442 | CG6842-PB | 1..442 | 1..442 | 2273 | 100 | Plus |
Vps4-PA | 442 | CG6842-PA | 1..442 | 1..442 | 2273 | 100 | Plus |
Kat60-PA | 572 | CG10229-PA | 244..570 | 86..439 | 640 | 41.6 | Plus |
Kat60-PB | 605 | CG10229-PB | 277..603 | 86..439 | 640 | 41.6 | Plus |
kat-60L1-PF | 605 | CG1193-PF | 235..603 | 67..439 | 627 | 39 | Plus |