Clone BS05229 Report

Search the DGRC for BS05229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptVps4-RA
Protein status:BS05229.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05229.5prime Sequence

864 bp (794 high quality bases) assembled on 2005-12-02

> BS05229.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCGTGGGCAATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATA
CCGTGGGTCCTCGA

BS05229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6842-PA 1329 CG6842-RA 1..848 17..864 4240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 2411 CG6842-RB 164..1012 16..864 4245 100 Plus
Vps4-RA 2031 CG6842-RA 164..1012 16..864 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17908808..17909519 153..864 3560 100 Plus
X 23542271 X 17908577..17908713 16..152 685 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:52:35 has no hits.

BS05229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:10 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:46 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:00 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 155..1011 7..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:10 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 155..1011 7..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:10 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17908568..17908713 5..152 96 -> Plus
X 17908808..17909518 153..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:00 Download gff for BS05229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17802601..17802746 5..152 96 -> Plus
arm_X 17802841..17803551 153..863 100   Plus

BS05229.3prime Sequence

922 bp (903 high quality bases) assembled on 2005-12-02

> BS05229.3prime
ATGGTCTAGAAAGCTTCTAGCCCTCCTGCCCAAAGTCCTCTGTGAATTTG
CGCAGCTTCTTCAGATCGTCTTCGTTGACGGTCGGTTTCGTGCGGGACAA
GGACTTCAGCATGTCGCGCATGGTCACGGGCGGTTCGAAGAGCTTGTCGC
TGGGCACATCCATCCAGTTCATCTCGACGGCGCCCTGGTCGCCAGGTGAG
CACGGAACCAGCAAATCGTTGACAATCTCCTCGTGGTTGGTGGGACTCGG
ACCGGATACCCGCTTGAAATGCGTGGCGGTCTGCACTTTCCTCACGGGTT
CCATCAGCGCATCGCGCACAACGATTGATATATCCGCGCCAGAGTAGCCC
TCGGTTTTGCCGGCCAACTCCTTGAGATCCTGCTCGGTGAGCACGTGCGT
GGTGTTGCCCAGATGGATCTTGAACATGACGAGGCGGGCATGCGCCTCCG
GCAGCGGAATGTAGATGCGCTTCTCGAATCGACGGCGAATGGCCGAGTCG
AGGACCCACGGTATGTTTGTGGCGCCGAGAACGAGAATGCCATCGGTGTC
ATTGCCCACGCCCTGCATCTGCACCAGAAACTCGGTCTTGATGCGTCGCA
CGCTGTCGTTCTCGTTGTCCGATCTCGCCGAGCACATCGAATCGATCTCG
TCAATGAAGATAATGGAGGGCTTGTGCTGGCGGGCCAGTTCGAAGAGATT
CTTGACCAGCTTCTCGGACTCGCCCAGCCACTTGGACATCAGATCCGAAC
TGGACACCGAGAAGAATGTGGAGCGATTGGCCTCGGTGGCGACGGCCTTG
GCCAGATAGGATTTACCGGTACCGGGCGGGCCGAACAGCAGGATGCCCTT
CCACGGAATCCGCTTGCCAGTGAAGAGCTGCGGGAATTTAATCGGCAGGA
TAACGGGCTCCTTCAGCGCCTC

BS05229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6842-PA 1329 CG6842-RA 424..1329 922..17 4505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 2411 CG6842-RB 588..1494 922..16 4520 99.9 Minus
Vps4-RA 2031 CG6842-RA 588..1494 922..16 4520 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17909095..17909669 922..348 2860 99.8 Minus
X 23542271 X 17909780..17910009 348..119 1150 100 Minus
X 23542271 X 17910077..17910180 119..16 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:12:52 has no hits.

BS05229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:09 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 424..1329 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:45 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6842-PA 424..1329 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:29 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 588..1494 16..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:23 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 588..1494 16..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:23 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17909095..17909669 348..922 99 -> Minus
X 17909781..17910009 119..347 100 -> Minus
X 17910078..17910180 16..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:29 Download gff for BS05229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17803128..17803702 348..922 99 -> Minus
arm_X 17803814..17804042 119..347 100 -> Minus
arm_X 17804111..17804213 16..118 100   Minus

BS05229.complete Sequence

1361 bp (1361 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635079

> BS05229.complete
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCGTGGGCAATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATA
CCGTGGGTCCTCGACTCGGCCATTCGCCGTCGATTCGAGAAGCGCATCTA
CATTCCGCTGCCGGAGGCGCATGCCCGCCTCGTCATGTTCAAGATCCATC
TGGGCAACACCACGCACGTGCTCACCGAGCAGGATCTCAAGGAGTTGGCC
GGCAAAACCGAGGGCTACTCTGGCGCGGATATATCAATCGTTGTGCGCGA
TGCGCTGATGGAACCCGTGAGGAAAGTGCAGACCGCCACGCATTTCAAGC
GGGTATCCGGTCCGAGTCCCACCAACCACGAGGAGATTGTCAACGATTTG
CTGGTTCCGTGCTCACCTGGCGACCAGGGCGCCGTCGAGATGAACTGGAT
GGATGTGCCCAGCGACAAGCTCTTCGAACCGCCCGTGACCATGCGCGACA
TGCTGAAGTCCTTGTCCCGCACGAAACCGACCGTCAACGAAGACGATCTG
AAGAAGCTGCGCAAATTCACAGAGGACTTTGGGCAGGAGGGCTAGAAGCT
TTCTAGACCAT

BS05229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 1329 CG6842-PB 1..1329 17..1345 6645 100 Plus
Vps4-RA 1329 CG6842-PA 1..1329 17..1345 6645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-RB 2411 CG6842-RB 164..1494 16..1346 6655 100 Plus
Vps4-RA 2031 CG6842-RA 164..1494 16..1346 6655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17908808..17909669 153..1014 4310 100 Plus
X 23542271 X 17909780..17910009 1014..1243 1150 100 Plus
X 23542271 X 17908577..17908713 16..152 685 100 Plus
X 23542271 X 17910077..17910180 1243..1346 520 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:40:27 has no hits.

BS05229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:54 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
CG6842-RA 1..1329 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:58 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
CG6842-RA 160..1499 7..1346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:06 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 165..1493 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:54 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
CG6842-RA 160..1499 7..1346 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:51 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
Vps4-RA 165..1493 17..1345 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:51 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
X 17908578..17908713 17..152 100 -> Plus
X 17909781..17910009 1015..1243 100 -> Plus
X 17910078..17910179 1244..1345 100   Plus
X 17908808..17909669 153..1014 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:06 Download gff for BS05229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17802611..17802746 17..152 100 -> Plus
arm_X 17802841..17803702 153..1014 100 -> Plus
arm_X 17803814..17804042 1015..1243 100 -> Plus
arm_X 17804111..17804212 1244..1345 100   Plus

BS05229.pep Sequence

Translation from 16 to 1344

> BS05229.pep
MAAGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQG
EKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSD
SDDEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVIL
PIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSS
DLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVR
RIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
AHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEP
VRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSD
KLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG*

BS05229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Vps4-PB 442 CG6842-PB 1..442 1..442 2273 100 Plus
Vps4-PA 442 CG6842-PA 1..442 1..442 2273 100 Plus
Kat60-PA 572 CG10229-PA 244..570 86..439 640 41.6 Plus
Kat60-PB 605 CG10229-PB 277..603 86..439 640 41.6 Plus
kat-60L1-PF 605 CG1193-PF 235..603 67..439 627 39 Plus