Clone BS05233 Report

Search the DGRC for BS05233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptamx-RA
Protein status:BS05233.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05233.3prime Sequence

885 bp (792 high quality bases) assembled on 2005-12-02

> BS05233.3prime
ATGGTCTAGAAAGCTTCTATATGTAAAGTGAGCCATCCGCTGGCCCCAAA
TAATGCATCGAGATGAGCAGGACATCGATGATGGTCCAGACGCCGAGGCC
GCCAAAGCTGAACAGCTTTCCAATCCCTTCCTGCCAGTGGCCCAAGTAGA
ATCGATCGGCTCCAAAGCCCCCTAGCGTGAGGCTAATCAGCAGGGCTGTG
CTCCACCGATAGCCCTGCGTCCAGTTGCATCGCAGGTTGCGGGTAAAGGA
TCGATTGCCGAGGCAGAGCACATCATGGTGCACGGTGCAGTTGGTACGGA
ATAGCTTATCCGTCGCCGAGTTGCAACTGGAGCGCTGGCCACAGCTCTGT
TGCCACATTTCCGTTTGGTAGCAGTATCGGCAATTCATTTGTCGCTGGAA
ACTCCGTTCGCCCAGGCACTGGACATTGTTGATCACCTCGCAGGTTACAT
TCAAGTCCCGGCCGTAGATGCATCCATGATTGTAGTTGCAACGGATGCAG
GGAAACTGCAGGCGATCACAGGGCGTTTCCTTATCGTACGGGCATAGCAT
GTTGTTGTTCCCATTGCTGCTACTGCTACTGCTGCTGCTGCTGTAGGCGG
TTATGTTGTCCAGGAGTCCACCGGCACCTCCTCCACTCTTGGCCACCATG
CTGGACACCAGGGGCGGCACATACACCTCGTTATCGTTGGCATTTCCATT
GCCATTGCTCGCATTGCTGTTATCCTTGTGATCGCCTTTTGAGTCCGATA
AGTCCATCTGGTTGCCACCGCTGGCCGTTTCGCTGTTCCTGATCCCCGTC
AGCACGAAGATCATGATCAGGACAATGGCCGATCGCATGTTGACCACAAT
GCACTGTCGTTGAAGCCTCATGTCGACTGATAACT

BS05233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12127-PA 855 amx-RA 1..855 871..17 4250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
amx-RB 1211 CG12127-RB 65..919 871..17 4260 99.9 Minus
amx-RA 1422 CG12127-RA 276..1130 871..17 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9246207..9247061 17..871 4260 99.9 Plus
Blast to na_te.dros performed 2015-01-30 15:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2477 608..549 120 66.7 Minus

BS05233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:17 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
amx-PA 1..855 17..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:56 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12127-PA 1..855 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:14:54 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1133 10..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:22 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1133 10..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:22 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9246198..9247061 10..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:14:54 Download gff for BS05233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9140231..9141094 10..871 99   Plus

BS05233.5prime Sequence

849 bp (758 high quality bases) assembled on 2005-12-02

> BS05233.5prime
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTGGGGGCAGC

BS05233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12127-PA 855 amx-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
amx-RB 1211 CG12127-RB 65..897 17..849 4150 99.9 Plus
amx-RA 1422 CG12127-RA 276..1108 17..849 4150 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9246229..9247061 849..17 4150 99.9 Minus
Blast to na_te.dros performed 2015-02-12 05:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2477 280..339 120 66.7 Plus

BS05233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:18 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
amx-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:57 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12127-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:28:14 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1108 17..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:29 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1108 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:29 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9246229..9247061 17..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:28:14 Download gff for BS05233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9140262..9141094 17..849 99   Minus

BS05233.complete Sequence

887 bp (887 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635080

> BS05233.complete
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTGGGGCCAGCG
GATGGCTCACTTTACATATAGAAGCTTTCTAGACCAT

BS05233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
amx-RB 855 CG12127-PB 1..855 17..871 4275 100 Plus
amx-RA 855 CG12127-PA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
amx-RB 1211 CG12127-RB 65..919 17..871 4275 100 Plus
amx-RA 1422 CG12127-RA 276..1130 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9246207..9247061 871..17 4275 100 Minus
Blast to na_te.dros performed 2014-11-27 10:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2477 280..339 120 66.7 Plus

BS05233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:14 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:15 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1133 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:36 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1130 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:14 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1133 17..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:25 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 276..1130 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:25 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
X 9246207..9247061 17..871 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:36 Download gff for BS05233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9140240..9141094 17..871 100   Minus

BS05233.pep Sequence

Translation from 16 to 870

> BS05233.pep
MRLQRQCIVVNMRSAIVLIMIFVLTGIRNSETASGGNQMDLSDSKGDHKD
NSNASNGNGNANDNEVYVPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSS
SSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNV
QCLGERSFQRQMNCRYCYQTEMWQQSCGQRSSCNSATDKLFRTNCTVHHD
VLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGI
GKLFSFGGLGVWTIIDVLLISMHYLGPADGSLYI*

BS05233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
amx-PB 284 CG12127-PB 1..284 1..284 1543 100 Plus
amx-PA 284 CG12127-PA 1..284 1..284 1543 100 Plus
CG10795-PA 178 CG10795-PA 59..153 192..284 218 44.2 Plus
CG11103-PB 172 CG11103-PB 79..166 195..281 184 45.5 Plus