Clone Sequence Records
BS05233.3prime Sequence
885 bp (792 high quality bases) assembled on 2005-12-02
> BS05233.3prime
ATGGTCTAGAAAGCTTCTATATGTAAAGTGAGCCATCCGCTGGCCCCAAA
TAATGCATCGAGATGAGCAGGACATCGATGATGGTCCAGACGCCGAGGCC
GCCAAAGCTGAACAGCTTTCCAATCCCTTCCTGCCAGTGGCCCAAGTAGA
ATCGATCGGCTCCAAAGCCCCCTAGCGTGAGGCTAATCAGCAGGGCTGTG
CTCCACCGATAGCCCTGCGTCCAGTTGCATCGCAGGTTGCGGGTAAAGGA
TCGATTGCCGAGGCAGAGCACATCATGGTGCACGGTGCAGTTGGTACGGA
ATAGCTTATCCGTCGCCGAGTTGCAACTGGAGCGCTGGCCACAGCTCTGT
TGCCACATTTCCGTTTGGTAGCAGTATCGGCAATTCATTTGTCGCTGGAA
ACTCCGTTCGCCCAGGCACTGGACATTGTTGATCACCTCGCAGGTTACAT
TCAAGTCCCGGCCGTAGATGCATCCATGATTGTAGTTGCAACGGATGCAG
GGAAACTGCAGGCGATCACAGGGCGTTTCCTTATCGTACGGGCATAGCAT
GTTGTTGTTCCCATTGCTGCTACTGCTACTGCTGCTGCTGCTGTAGGCGG
TTATGTTGTCCAGGAGTCCACCGGCACCTCCTCCACTCTTGGCCACCATG
CTGGACACCAGGGGCGGCACATACACCTCGTTATCGTTGGCATTTCCATT
GCCATTGCTCGCATTGCTGTTATCCTTGTGATCGCCTTTTGAGTCCGATA
AGTCCATCTGGTTGCCACCGCTGGCCGTTTCGCTGTTCCTGATCCCCGTC
AGCACGAAGATCATGATCAGGACAATGGCCGATCGCATGTTGACCACAAT
GCACTGTCGTTGAAGCCTCATGTCGACTGATAACT
BS05233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12127-PA | 855 | amx-RA | 1..855 | 871..17 | 4250 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amx-RB | 1211 | CG12127-RB | 65..919 | 871..17 | 4260 | 99.9 | Minus |
amx-RA | 1422 | CG12127-RA | 276..1130 | 871..17 | 4260 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9246207..9247061 | 17..871 | 4260 | 99.9 | Plus |
Blast to na_te.dros performed 2015-01-30 15:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 608..549 | 120 | 66.7 | Minus |
BS05233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:17 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-PA | 1..855 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:56 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12127-PA | 1..855 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:14:54 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1133 | 10..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:22 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1133 | 10..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:22 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9246198..9247061 | 10..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:14:54 Download gff for
BS05233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9140231..9141094 | 10..871 | 99 | | Plus |
BS05233.5prime Sequence
849 bp (758 high quality bases) assembled on 2005-12-02
> BS05233.5prime
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTGGGGGCAGC
BS05233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12127-PA | 855 | amx-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amx-RB | 1211 | CG12127-RB | 65..897 | 17..849 | 4150 | 99.9 | Plus |
amx-RA | 1422 | CG12127-RA | 276..1108 | 17..849 | 4150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9246229..9247061 | 849..17 | 4150 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 05:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 280..339 | 120 | 66.7 | Plus |
BS05233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:18 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:31:57 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12127-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:28:14 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1108 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:29 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1108 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:29 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9246229..9247061 | 17..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:28:14 Download gff for
BS05233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9140262..9141094 | 17..849 | 99 | | Minus |
BS05233.complete Sequence
887 bp (887 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635080
> BS05233.complete
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTGGGGCCAGCG
GATGGCTCACTTTACATATAGAAGCTTTCTAGACCAT
BS05233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amx-RB | 855 | CG12127-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
amx-RA | 855 | CG12127-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amx-RB | 1211 | CG12127-RB | 65..919 | 17..871 | 4275 | 100 | Plus |
amx-RA | 1422 | CG12127-RA | 276..1130 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9246207..9247061 | 871..17 | 4275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 280..339 | 120 | 66.7 | Plus |
BS05233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:14 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:15 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1133 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:36 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1130 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:14 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1133 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:25 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amx-RA | 276..1130 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:25 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9246207..9247061 | 17..871 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:36 Download gff for
BS05233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9140240..9141094 | 17..871 | 100 | | Minus |
BS05233.pep Sequence
Translation from 16 to 870
> BS05233.pep
MRLQRQCIVVNMRSAIVLIMIFVLTGIRNSETASGGNQMDLSDSKGDHKD
NSNASNGNGNANDNEVYVPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSS
SSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNV
QCLGERSFQRQMNCRYCYQTEMWQQSCGQRSSCNSATDKLFRTNCTVHHD
VLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGI
GKLFSFGGLGVWTIIDVLLISMHYLGPADGSLYI*
BS05233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amx-PB | 284 | CG12127-PB | 1..284 | 1..284 | 1543 | 100 | Plus |
amx-PA | 284 | CG12127-PA | 1..284 | 1..284 | 1543 | 100 | Plus |
CG10795-PA | 178 | CG10795-PA | 59..153 | 192..284 | 218 | 44.2 | Plus |
CG11103-PB | 172 | CG11103-PB | 79..166 | 195..281 | 184 | 45.5 | Plus |