Clone Sequence Records
BS05237.complete Sequence
2345 bp assembled on 2009-12-07
GenBank Submission: KX794248
> BS05237.complete
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGGGTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAG
AGTTGGACTTCCTTCCTTAAGGCGCGACTCAACTGCTCGGTGCCCGGCGA
GTTTCCGTTCTATTTTGACGAAATCCAGGCCATTAGTCCGATTGTGGAGA
GCGGATCCAAGTCACTGATTTATGCTGTCTTCACAACCTCTGTGAATGCC
ATTCCTGGCTCGGCCGTATGCGCATTTAACGTAGACGATATACTGGCCGC
CTTTGATGGAGAGTTCAAGTCGCAGAAAGATTCACAGTCCCATTGGCTGC
CAGTGGAGCGTGAGCAAGTGCCGAAACCACGTCCAGGACAGTGCGTTGAG
GACTCTAGAACTCTGACCAGCATCGCGGTTAATTTCATTAAGAACCATCC
CTTGATGGAGGAGGCTGTGCCAGCAGTGCACGGTCGTCCGCTGCTGACCA
AGGTGAATCTGCACCACCGACTTACTGCGATCGCAGTGCATCCGCAGGTA
AAGTCCCTAAGTGGAGCTTACTACGATGTTATATACAGTGGCACCGATGA
CGGCAAGGTGACCAAGTTCATCAATATACTGAGCACTCACCCGAACTCAA
CTGTTGATCGCCTGAAGACAGTGGTTATATCAGAGATGCAGGTCCTTCCA
CTTGGAACGCCAATTAGGGAATTGGTGATCTCCACTTCGAAAAACTCGTT
GGTTGTGGTTAGCGATGGCAGCTTGGTTAGCGTGCCCCTGCACCACTGCT
CTCACATTGTCGACTGTCTGGGCTGCTTAAGTCTCCAGGATCCCATTTGC
GCCTGGGACTTACAGACACACGAATGCAAGAACCTGGCTACGAGTCAGCA
CAAGTTCGGAACAAAGACTTATTTGCAAAGCTTGAATAGCACCAAGAAAG
CCGCTGCCTTGCTATGTCCTCATATTCCCCGAGATGCACCCGGTGCGGAA
ACAGTAAGCTTTGTTACCATGGCTCCACCGCCAACAGAGGAGCAGAAGCT
TTTGTACTCCAATGTGGGCTCGTCGCAGGGCAATCAGCCAAGCTTGGAAC
AACAGCCAACTGGTGGCGATGACTTTGGTTTGAACAAGATCACCCTTACG
TCCATGGATCCCGACGATATTATGCCGAATTTGAACGATCCCCAAAAGTC
TACGGCCAGTGTAGATGAAATCAAATATGCTTCAACGCCCAGCTTCATGC
TACTTACAACTATCGTTTTCTTTACCTTCCTTGTGGGTGGAATCGCAGGA
ATATGCTGTGTGAAGGCTAAGAGCCGCCTGATGGAGGCCCAAATGGATGA
AAGTCACCGCAATCATTTCGGCAAGCCAATGCAATTTAAACATCAAAATA
CTGGCAAAGACATCAACCTGTTAATGGGCTCCAATGCCTATACGACCACA
CAAAAAACACCTAATCTGGATTTAGAAAAGGATCGCAGTCATGAGTGCAA
AAACTCCACGGAACATTTGGAAAAAGAGCTGCCCTGCAAAACGTCAACGC
TGACAAAAGTGAAACGCACTTACATCTAGAAGCTTTCTAGACCAT
BS05237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 2313 | CG6446-PC | 1..2313 | 17..2329 | 11565 | 100 | Plus |
| Sema-1b-RB | 2313 | CG6446-PB | 1..2313 | 17..2329 | 11565 | 100 | Plus |
| Sema-1b-RA | 2313 | CG6446-PA | 1..2313 | 17..2329 | 11565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 3910 | CG6446-RC | 575..2887 | 17..2329 | 11565 | 100 | Plus |
| Sema-1b-RB | 4262 | CG6446-RB | 479..2791 | 17..2329 | 11565 | 100 | Plus |
| Sema-1b-RA | 4269 | CG6446-RA | 486..2798 | 17..2329 | 11565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17674827..17675837 | 1937..927 | 5055 | 100 | Minus |
| 2R | 25286936 | 2R | 17675911..17676593 | 926..244 | 3415 | 100 | Minus |
| 2R | 25286936 | 2R | 17674310..17674508 | 2329..2131 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 17674571..17674765 | 2131..1937 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 17678272..17678404 | 149..17 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 17677825..17677919 | 244..150 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:43:21 has no hits.
BS05237.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:35 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RB | 400..2712 | 17..2329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:30 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 486..2798 | 17..2329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:52 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RB | 400..2712 | 17..2329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:09 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 486..2798 | 17..2329 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:09 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17678272..17678404 | 17..149 | 100 | | Minus |
| 2R | 17674827..17675837 | 927..1937 | 100 | <- | Minus |
| 2R | 17674310..17674508 | 2131..2329 | 100 | <- | Minus |
| 2R | 17674572..17674764 | 1938..2130 | 100 | <- | Minus |
| 2R | 17675911..17676593 | 244..926 | 100 | <- | Minus |
| 2R | 17677826..17677919 | 150..243 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:30 Download gff for
BS05237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13561815..13562013 | 2131..2329 | 100 | <- | Minus |
| arm_2R | 13562077..13562269 | 1938..2130 | 100 | <- | Minus |
| arm_2R | 13562332..13563342 | 927..1937 | 100 | <- | Minus |
| arm_2R | 13563416..13564098 | 244..926 | 100 | <- | Minus |
| arm_2R | 13565331..13565424 | 150..243 | 100 | <- | Minus |
| arm_2R | 13565777..13565909 | 17..149 | 100 | | Minus |
BS05237.3prime Sequence
912 bp (744 high quality bases) assembled on 2005-12-02
> BS05237.3prime
ATGGTCTAGAAAGCTTCTAGATGTAAGTGCGTTTCACTTTTGTCAGCGTT
GACGTTTTGCAGGGCAGCTCTTTTTCCAAATGTTCCGTGGAGTTTTTGCA
CTCATGACTGCGATCCTTTTCTAAATCCAGATTAGGTGTTTTTTGTGTGG
TCGTATAGGCATTGGAGCCCATTAACAGGTTGATGTCTTTGCCAGTATTT
TGATGTTTAAATTGCATTGGCTTGCCGAAATGATTGCGGTGACTTTCATC
CATTTGGGCCTCCATCAGGCGGCTCTTAGCCTTCACACAGCATATTCCTG
CGATTCCACCCACAAGGAAGGTAAAGAAAACGATAGTTGTAAGTAGCATG
AAGCTGGGCGTTGAAGCATATTTGATTTCATCTACACTGGCCGTAGACTT
TTGGGGATCGTTCAAATTCGGCATAATATCGTCGGGATCCATGGACGTAA
GGGTGATCTTGTTCAAACCAAAGTCATCGCCACCAGTTGGCTGTTGTTCC
AAGCTTGGCTGATTGCCCTGCGACGAGCCCACATTGGAGTACAAAAGCTT
CTGCTCCTCTGTTGGCGGTGGAGCCATGGTAACAAAGCTTACTGTTTCCG
CACCGGGTGCATCTCGGGGAATATGAGGACATAGCAAGGCAGCGGCTTTC
TTGGTGCTATTCAAGCTTTGCAAATAAGTCTTTGTTCCGAACTTGTGCTG
ACTCGTAGCCAGGTTCTTGCATTCGTGTGTCTGTAAGTCCCAGGCGCAAA
TGGGATCCTGGAGACTTAAGCAGCCCAGACAGTCGACAATGTGAGAGCAG
TGGTGCAGGGGCACGCTAACCAAGCTGCCATCGCTAACCACAACCAACGA
GTTTTTCGAAGTGGAGATCACCAATTCCCTAATTGGCGTTCCAAGTGGAA
GGACCTGCATCT
BS05237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6446-PA | 2313 | Sema-1b-RA | 1418..2313 | 912..17 | 4480 | 100 | Minus |
| CG6446-PB | 2313 | Sema-1b-RB | 1418..2313 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 3910 | CG6446-RC | 1992..2887 | 912..17 | 4480 | 100 | Minus |
| Sema-1b-RB | 4262 | CG6446-RB | 1896..2791 | 912..17 | 4480 | 100 | Minus |
| Sema-1b-RA | 4269 | CG6446-RA | 1903..2798 | 912..17 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17674827..17675330 | 409..912 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 17674310..17674508 | 17..215 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 17674571..17674765 | 215..409 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:57:51 has no hits.
BS05237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:26 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6446-PB | 1418..2313 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:07 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6446-PB | 1418..2313 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:13:13 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 1903..2809 | 5..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:56:05 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 1903..2809 | 5..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:56:05 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17674299..17674508 | 5..215 | 97 | <- | Plus |
| 2R | 17674572..17674764 | 216..408 | 100 | <- | Plus |
| 2R | 17674827..17675330 | 409..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:13:13 Download gff for
BS05237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13561804..13562013 | 5..215 | 97 | <- | Plus |
| arm_2R | 13562077..13562269 | 216..408 | 100 | <- | Plus |
| arm_2R | 13562332..13562835 | 409..912 | 100 | | Plus |
BS05237.5prime Sequence
808 bp (761 high quality bases) assembled on 2005-12-02
> BS05237.5prime
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGG
BS05237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6446-PA | 2313 | Sema-1b-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG6446-PB | 2313 | Sema-1b-RB | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 3910 | CG6446-RC | 575..1366 | 17..808 | 3960 | 100 | Plus |
| Sema-1b-RB | 4262 | CG6446-RB | 479..1270 | 17..808 | 3960 | 100 | Plus |
| Sema-1b-RA | 4269 | CG6446-RA | 486..1277 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17676029..17676593 | 808..244 | 2825 | 100 | Minus |
| 2R | 25286936 | 2R | 17678272..17678404 | 149..17 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 17677825..17677919 | 244..150 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:09 has no hits.
BS05237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:27 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6446-PB | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:08 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6446-PB | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:50:17 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1277 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:27 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1277 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:27 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17678272..17678411 | 9..149 | 97 | | Minus |
| 2R | 17676029..17676593 | 244..808 | 100 | <- | Minus |
| 2R | 17677826..17677919 | 150..243 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:50:17 Download gff for
BS05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13563534..13564098 | 244..808 | 100 | <- | Minus |
| arm_2R | 13565331..13565424 | 150..243 | 100 | <- | Minus |
| arm_2R | 13565777..13565916 | 9..149 | 97 | | Minus |
BS05237.pep Sequence
Translation from 16 to 2328
> BS05237.pep
MSSKSRPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVL
AHFIGNSTDYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDA
DRELCALKGKHEWDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEV
SSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATV
ADFSGGDPLIYRENLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSME
VMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYF
DEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEF
KSQKDSQSHWLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEA
VPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTK
FINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSD
GSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTK
TYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNV
GSSQGNQPSLEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVD
EIKYASTPSFMLLTTIVFFTFLVGGIAGICCVKAKSRLMEAQMDESHRNH
FGKPMQFKHQNTGKDINLLMGSNAYTTTQKTPNLDLEKDRSHECKNSTEH
LEKELPCKTSTLTKVKRTYI*
BS05237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-PC | 770 | CG6446-PC | 1..770 | 1..770 | 4056 | 100 | Plus |
| Sema-1b-PB | 770 | CG6446-PB | 1..770 | 1..770 | 4056 | 100 | Plus |
| Sema-1b-PA | 770 | CG6446-PA | 1..770 | 1..770 | 4056 | 100 | Plus |
| Sema-1a-PI | 817 | CG18405-PI | 52..597 | 19..545 | 1169 | 42.6 | Plus |
| Sema-1a-PH | 820 | CG18405-PH | 52..597 | 19..545 | 1169 | 42.6 | Plus |
