Clone Sequence Records
BS05238.3prime Sequence
937 bp (840 high quality bases) assembled on 2005-12-02
> BS05238.3prime
ATGGTCTAGAAAGCTTTCACATTGTGGACATGCGTGCATATCGAATTATC
TGGTCGTGATTCAGGGGGCTGTCGGTGGACAGCTGAACCCTTTGCCACTG
CCTGGTCTCGTTCGATTTCCGGATGGCCTCAACCACAGCCTGAACGTAGA
GGCCGTCCTCAAAGGTGGCCGCTGTGGAAACTGGAGCCTTAACCCAGGAG
GACTCCTTGCTGCCGAAGGCTTCCTTCAGAGCGCCCACCATCTTGCAGAG
TCCTTTGATATATGGTCGTGGTAGCAAAGAGTTGTTGGTGGCGAAGTGCA
AATCCTGGACATCCACGTAAACAGCTTCCTCTTTGGGTTGGCCCTCCTTG
AGGACAAATAGGTCGCCGCCGCGGACCACCAGGTGTCCTTTGCTGCCATA
GATGAGCACTTCCTGCGAGAAGGCTTTTGCTGGCACAGTGTGACTGTGCA
GGGCCACTGTGACCAGCGTTCCACTGGCCAGTTCCATTTGGAAGTTGCAG
AAATCCGGAGCCGTAATTTGTCGAATGCCATTGATGGCCGGTGTGGTTTT
CGTGTAGGATCGTAGGACTCCATGCACTCTTATTGCCTGCTGTTGCAGCA
GAAAGGTGACCAAGTCCACCACGGATCCCACGAGATTCAGGGCACCGCCG
CCCATTTGCGCATCGCACATCCAGTTGTACTTCTCGGGAAAGAGCGTTCC
CATCTGGACGCGCACATCCATGAGTACCACGTCGCCAATAGAGCCAATTA
GCTCCTCCTGCAGACAACGACGCATATGTGTAAAGGCGGGCAGGAACCTC
AGCGGGTGATTGACCAGGGAAATCAGAGTGGGATAGTACTGAGAAGCCCG
AACCATTTTGAGTGCGTCCTGCTGGTGCAATCCTGCTGGCTTGTCGCACA
CCACATGCTTCCCGATGCCAAAGGCCTTCACCGAGAT
BS05238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-PA | 1155 | CG17712-RA | 235..1155 | 937..17 | 4580 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-RA | 1436 | CG17712-RA | 332..1252 | 937..17 | 4590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1750871..1751791 | 17..937 | 4590 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:05:14 has no hits.
BS05238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:28 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-PA | 235..1155 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:09 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-PA | 235..1155 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:31 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 332..1252 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:20 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 332..1252 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:20 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1750871..1751791 | 17..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:31 Download gff for
BS05238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1750871..1751791 | 17..937 | 99 | | Plus |
BS05238.5prime Sequence
969 bp (795 high quality bases) assembled on 2005-11-29
> BS05238.5prime
GAAGTTATCAGTCGACATGCTGCCGGGCGTTGGAGTGTTCGGAACGGGAG
AGATAGCCAATGTGCTGGTGCCGCTGCTGCGGGAGAAAGGATTCGAGGTG
CGGGCCATTTGGGGCAGGACCCTGAAAGAGGCGAAAGAGACTGCGACCAC
GCAGAATGTACAATTCCATACGAACGTAATCGACGATGTCCTGCTGCGGA
AGGATGTGGATCTGGTGTTCATCGTGTGCCAGCCCTTTCTGCACGCGGAG
ATCTCGGTGAAGGCCTTGGGCATCGGGAAGCATGTGGTGTGCGACAAGCC
AGCAGGATTGCACCAGCAGGACGCACTCAAAATGGTTCGGGCTTCTCAGT
ACTATCCCACTCTGATTTCCCTGGTCAATCACCCGCTGAGGTTCCTGCCC
GCCTTTACACATATGCGTCGTTGTCTGCAGGAGGAGCTAATTGGCTCTAT
TGGCGACGTGGTACTCATGGATGTGCGCGTCCAGATGGGAACGCTCTTTC
CCGAGAAGTACAACTGGATGTGCGATGCGCAAATGGGCGGCGGTGCCCTG
AATCTCGTGGGATCCGTGGTGGACTTGGTCACCTTTCTGCTGCAACAGCA
GGCAATAAGAGTGCATGGAGTCCTACGATCCTACACGAAAACCACACCGG
CCATCAATGGCATTCGACAAATTACGGCTCCGGATTTCTGCAACTTCCAA
ATGGAACTGGCCAGTGGAACGCTGGTCACAGTGGCCCTGCACAGTCACAC
TGTGCCAGCAAAAGCCTTCTCGCANGAAGTGCTCATCTATGGCAGCAAAG
GACACCTGGTGGTCCGCGGCGGCGACCTATTTGTCCTCAAGGAGGGCCAA
CCCAAAGAGGAAGCTGTTTACGTGGATGTCCAGGATTTGCACTTCGCCAC
CCACAACTCTTTGCTACCACGACCATATATCAAAGGACTCTGCCAGATGG
TGGGCGCTCTGAAGGAAGC
BS05238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-PA | 1155 | CG17712-RA | 1..953 | 17..969 | 4696 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-RA | 1436 | CG17712-RA | 98..1050 | 17..969 | 4724 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1751073..1752025 | 969..17 | 4724 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:51:12 has no hits.
BS05238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:29 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-PA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:10 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-PA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:03 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 90..1050 | 5..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:24:22 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 90..1050 | 5..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:24:22 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1751073..1752033 | 5..969 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:03 Download gff for
BS05238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1751073..1752033 | 5..969 | 99 | | Minus |
BS05238.complete Sequence
1187 bp (1187 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635081
> BS05238.complete
GAAGTTATCAGTCGACATGCTGCCGGGCGTTGGAGTGTTCGGAACGGGAG
AGATAGCCAATGTGCTGGTGCCGCTGCTGCGGGAGAAAGGATTCGAGGTG
CGGGCCATTTGGGGCAGGACCCTGAAAGAGGCGAAAGAGACTGCGACCAC
GCAGAATGTACAATTCCATACGAACGTAATCGACGATGTCCTGCTGCGGA
AGGATGTGGATCTGGTGTTCATCGTGTGCCAGCCCTTTCTGCACGCGGAG
ATCTCGGTGAAGGCCTTGGGCATCGGGAAGCATGTGGTGTGCGACAAGCC
AGCAGGATTGCACCAGCAGGACGCACTCAAAATGGTTCGGGCTTCTCAGT
ACTATCCCACTCTGATTTCCCTGGTCAATCACCCGCTGAGGTTCCTGCCC
GCCTTTACACATATGCGTCGTTGTCTGCAGGAGGAGCTAATTGGCTCTAT
TGGCGACGTGGTACTCATGGATGTGCGCGTCCAGATGGGAACGCTCTTTC
CCGAGAAGTACAACTGGATGTGCGATGCGCAAATGGGCGGCGGTGCCCTG
AATCTCGTGGGATCCGTGGTGGACTTGGTCACCTTTCTGCTGCAACAGCA
GGCAATAAGAGTGCATGGAGTCCTACGATCCTACACGAAAACCACACCGG
CCATCAATGGCATTCGACAAATTACGGCTCCGGATTTCTGCAACTTCCAA
ATGGAACTGGCCAGTGGAACGCTGGTCACAGTGGCCCTGCACAGTCACAC
TGTGCCAGCAAAAGCCTTCTCGCAGGAAGTGCTCATCTATGGCAGCAAAG
GACACCTGGTGGTCCGCGGCGGCGACCTATTTGTCCTCAAGGAGGGCCAA
CCCAAAGAGGAAGCTGTTTACGTGGATGTCCAGGATTTGCACTTCGCCAC
CAACAACTCTTTGCTACCACGACCATATATCAAAGGACTCTGCAAGATGG
TGGGCGCTCTGAAGGAAGCCTTCGGCAGCAAGGAGTCCTCCTGGGTTAAG
GCTCCAGTTTCCACAGCGGCCACCTTTGAGGACGGCCTCTACGTTCAGGC
TGTGGTTGAGGCCATCCGGAAATCGAACGAGACCAGGCAGTGGCAAAGGG
TTCAGCTGTCCACCGACAGCCCCCTGAATCACGACCAGATAATTCGATAT
GCACGCATGTCCACAATGTGAAAGCTTTCTAGACCAT
BS05238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-RA | 1155 | CG17712-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-RA | 1436 | CG17712-RA | 98..1252 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1750871..1752025 | 1171..17 | 5775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:08:07 has no hits.
BS05238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:57 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 1..1155 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:59 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 84..1246 | 5..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:13 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 98..1251 | 17..1170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:57 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 84..1246 | 5..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:40 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17712-RA | 98..1251 | 17..1170 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:40 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1750872..1752025 | 17..1170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:13 Download gff for
BS05238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1750872..1752025 | 17..1170 | 100 | | Minus |
BS05238.pep Sequence
Translation from 16 to 1170
> BS05238.pep
MLPGVGVFGTGEIANVLVPLLREKGFEVRAIWGRTLKEAKETATTQNVQF
HTNVIDDVLLRKDVDLVFIVCQPFLHAEISVKALGIGKHVVCDKPAGLHQ
QDALKMVRASQYYPTLISLVNHPLRFLPAFTHMRRCLQEELIGSIGDVVL
MDVRVQMGTLFPEKYNWMCDAQMGGGALNLVGSVVDLVTFLLQQQAIRVH
GVLRSYTKTTPAINGIRQITAPDFCNFQMELASGTLVTVALHSHTVPAKA
FSQEVLIYGSKGHLVVRGGDLFVLKEGQPKEEAVYVDVQDLHFATNNSLL
PRPYIKGLCKMVGALKEAFGSKESSWVKAPVSTAATFEDGLYVQAVVEAI
RKSNETRQWQRVQLSTDSPLNHDQIIRYARMSTM*
BS05238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17712-PA | 384 | CG17712-PA | 1..384 | 1..384 | 1977 | 100 | Plus |
