Clone Sequence Records
BS05240.3prime Sequence
905 bp (808 high quality bases) assembled on 2005-12-02
> BS05240.3prime
ATGGTCTAGAAAGCTTTCATTGGCGCTGTTGAGCGTTACTGATGAACTCG
CCGTGCTTTTGCACCACATCGGCCACGATGGGCTCCTCGATCTCGAGTCC
TTGCAGCGTCTGTTCGCGAGTCAAATGCAGCTCGTAGGAATCTGTGGGCG
TGACGAACACCACGCGATGCTTGCGTGTCTGCAGCACATTGGCAATGACC
AGCTTGTGCTTGTATTTGTTGAGACTGTCACGTGCCTTCACAATCAATAG
GCTCTCGTCCGTTTCCAGTTTAAAGGACACCACAAAGGCGTGCGGGACCC
ACAAACTGGCGAGGGGGGCCAGCATTTTTGGCACCAGCTGCAGCGAAATC
GTCGGCGCTCCATCTCCTGATTGCATTTTGTGGGTGGGCATCATGTCCTC
GGGTATGTAGAAATCGGATACGGCTGCGGCTAGGTAGAGCACGGCTCGCT
CCTCGAAGGCGGCCAGGCACTCGCAGGCGGCGCGGAGCAGCCACATGTAG
TCCACCACGCTGGTGAAGTTCACGTACAGGATCATCTGCGTTTCGCGGGC
TATCTTGTATTTGGCCAGCACCGGAGCAAACACGTCCACCGAATCCGGTT
TGATGGCTATCGTCGAACTCTGGCTGTTGTCCGCAATGTCCAGCATGTCG
AAGAACTGCTGGCCGGTGAAGTGGCGCGTGAAGGGCTCCAGCGACTTGTG
GCGATGCATGAAAATCACGGCATAGTCGTGGTCGAGGAAGTATTCCGCCG
AGGCGGAGCCACGCGTTCCAGCACTAAAATTGTCCACAAACCGCACCGTA
TTGTGCTCCAGGGGAACTGTGGTGCCACCGGACGTGACGAGGACGATGCG
ATTCTGGAGCTTGTTGTGCCGTTCGCAGAACTCCTTGAGCAGGGAGCGAT
TGTCC
BS05240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5629-PA | 942 | CG5629-RA | 54..942 | 905..17 | 4445 | 100 | Minus |
CG5629-PB | 942 | CG5629-RB | 54..942 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 704..1592 | 905..17 | 4445 | 100 | Minus |
Ppcs-RC | 4134 | CG5629-RC | 704..1592 | 905..17 | 4445 | 100 | Minus |
Ppcs-RA | 4134 | CG5629-RA | 704..1592 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145925 | 389..833 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 19142088..19142274 | 203..389 | 935 | 100 | Plus |
3R | 32079331 | 3R | 19141879..19142020 | 63..204 | 710 | 100 | Plus |
3R | 32079331 | 3R | 19147135..19147207 | 833..905 | 365 | 100 | Plus |
3R | 32079331 | 3R | 19141596..19141644 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:12:49 has no hits.
BS05240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:32 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PA | 54..942 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:15 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PB | 54..942 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:27 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 704..1597 | 11..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 704..1597 | 11..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:18 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19141591..19141643 | 11..64 | 94 | <- | Plus |
3R | 19141881..19142018 | 65..202 | 100 | <- | Plus |
3R | 19142088..19142273 | 203..388 | 100 | <- | Plus |
3R | 19145481..19145924 | 389..832 | 100 | <- | Plus |
3R | 19147135..19147207 | 833..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:27 Download gff for
BS05240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967810..14967995 | 203..388 | 100 | <- | Plus |
arm_3R | 14967313..14967365 | 11..64 | 94 | <- | Plus |
arm_3R | 14967603..14967740 | 65..202 | 100 | <- | Plus |
arm_3R | 14971203..14971646 | 389..832 | 100 | <- | Plus |
arm_3R | 14972857..14972929 | 833..905 | 100 | | Plus |
BS05240.5prime Sequence
912 bp (793 high quality bases) assembled on 2005-11-29
> BS05240.5prime
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAGGGACTCGAGATCGAGGAGCCCATCGT
GGNCCGATGTGG
BS05240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5629-PA | 942 | CG5629-RA | 1..886 | 17..902 | 4405 | 99.8 | Plus |
CG5629-PB | 942 | CG5629-RB | 1..886 | 17..902 | 4405 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 649..1545 | 15..912 | 4450 | 99.8 | Plus |
Ppcs-RC | 4134 | CG5629-RC | 649..1545 | 15..912 | 4450 | 99.8 | Plus |
Ppcs-RA | 4134 | CG5629-RA | 649..1545 | 15..912 | 4450 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145925 | 586..142 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 19142088..19142274 | 772..586 | 935 | 100 | Minus |
3R | 32079331 | 3R | 19141889..19142020 | 902..771 | 645 | 99.2 | Minus |
3R | 32079331 | 3R | 19147135..19147262 | 142..15 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:45:44 has no hits.
BS05240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:34 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PA | 1..895 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:16 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PB | 1..895 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:03 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 637..1545 | 2..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:18:04 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 637..1545 | 2..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:18:04 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19142088..19142273 | 587..772 | 100 | <- | Minus |
3R | 19141880..19142018 | 773..912 | 98 | <- | Minus |
3R | 19145481..19145924 | 143..586 | 100 | <- | Minus |
3R | 19147135..19147274 | 2..142 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:03 Download gff for
BS05240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967602..14967740 | 773..912 | 98 | <- | Minus |
arm_3R | 14967810..14967995 | 587..772 | 100 | <- | Minus |
arm_3R | 14971203..14971646 | 143..586 | 100 | <- | Minus |
arm_3R | 14972857..14972996 | 2..142 | 96 | | Minus |
BS05240.complete Sequence
974 bp (974 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635082
> BS05240.complete
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATGTGGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGC
GCCAATGAAAGCTTTCTAGACCAT
BS05240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 942 | CG5629-PD | 1..942 | 17..958 | 4710 | 100 | Plus |
Ppcs-RC | 1122 | CG5629-PC | 1..942 | 17..958 | 4710 | 100 | Plus |
Ppcs-RA | 942 | CG5629-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 649..1592 | 15..958 | 4720 | 100 | Plus |
Ppcs-RC | 4134 | CG5629-RC | 649..1592 | 15..958 | 4720 | 100 | Plus |
Ppcs-RA | 4134 | CG5629-RA | 649..1592 | 15..958 | 4720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145925 | 586..142 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 19142088..19142274 | 772..586 | 935 | 100 | Minus |
3R | 32079331 | 3R | 19141879..19142020 | 912..771 | 710 | 100 | Minus |
3R | 32079331 | 3R | 19147135..19147262 | 142..15 | 640 | 100 | Minus |
3R | 32079331 | 3R | 19141596..19141644 | 958..910 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:44:31 has no hits.
BS05240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:58 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:01 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 634..1594 | 2..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:40 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 651..1591 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:58 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 634..1594 | 2..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:52 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 651..1591 | 17..957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:52 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19141597..19141643 | 911..957 | 100 | <- | Minus |
3R | 19141881..19142018 | 773..910 | 100 | <- | Minus |
3R | 19142088..19142273 | 587..772 | 100 | <- | Minus |
3R | 19145481..19145924 | 143..586 | 100 | <- | Minus |
3R | 19147135..19147260 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:40 Download gff for
BS05240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967319..14967365 | 911..957 | 100 | <- | Minus |
arm_3R | 14967603..14967740 | 773..910 | 100 | <- | Minus |
arm_3R | 14967810..14967995 | 587..772 | 100 | <- | Minus |
arm_3R | 14971203..14971646 | 143..586 | 100 | <- | Minus |
arm_3R | 14972857..14972982 | 17..142 | 100 | | Minus |
BS05240.pep Sequence
Translation from 16 to 957
> BS05240.pep
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQ*
BS05240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-PD | 313 | CG5629-PD | 1..313 | 1..313 | 1625 | 100 | Plus |
Ppcs-PA | 313 | CG5629-PA | 1..313 | 1..313 | 1625 | 100 | Plus |
Ppcs-PC | 373 | CG5629-PC | 1..313 | 1..313 | 1625 | 100 | Plus |