Clone BS05240 Report

Search the DGRC for BS05240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptPpcs-RA
Protein status:BS05240.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05240.3prime Sequence

905 bp (808 high quality bases) assembled on 2005-12-02

> BS05240.3prime
ATGGTCTAGAAAGCTTTCATTGGCGCTGTTGAGCGTTACTGATGAACTCG
CCGTGCTTTTGCACCACATCGGCCACGATGGGCTCCTCGATCTCGAGTCC
TTGCAGCGTCTGTTCGCGAGTCAAATGCAGCTCGTAGGAATCTGTGGGCG
TGACGAACACCACGCGATGCTTGCGTGTCTGCAGCACATTGGCAATGACC
AGCTTGTGCTTGTATTTGTTGAGACTGTCACGTGCCTTCACAATCAATAG
GCTCTCGTCCGTTTCCAGTTTAAAGGACACCACAAAGGCGTGCGGGACCC
ACAAACTGGCGAGGGGGGCCAGCATTTTTGGCACCAGCTGCAGCGAAATC
GTCGGCGCTCCATCTCCTGATTGCATTTTGTGGGTGGGCATCATGTCCTC
GGGTATGTAGAAATCGGATACGGCTGCGGCTAGGTAGAGCACGGCTCGCT
CCTCGAAGGCGGCCAGGCACTCGCAGGCGGCGCGGAGCAGCCACATGTAG
TCCACCACGCTGGTGAAGTTCACGTACAGGATCATCTGCGTTTCGCGGGC
TATCTTGTATTTGGCCAGCACCGGAGCAAACACGTCCACCGAATCCGGTT
TGATGGCTATCGTCGAACTCTGGCTGTTGTCCGCAATGTCCAGCATGTCG
AAGAACTGCTGGCCGGTGAAGTGGCGCGTGAAGGGCTCCAGCGACTTGTG
GCGATGCATGAAAATCACGGCATAGTCGTGGTCGAGGAAGTATTCCGCCG
AGGCGGAGCCACGCGTTCCAGCACTAAAATTGTCCACAAACCGCACCGTA
TTGTGCTCCAGGGGAACTGTGGTGCCACCGGACGTGACGAGGACGATGCG
ATTCTGGAGCTTGTTGTGCCGTTCGCAGAACTCCTTGAGCAGGGAGCGAT
TGTCC

BS05240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5629-PA 942 CG5629-RA 54..942 905..17 4445 100 Minus
CG5629-PB 942 CG5629-RB 54..942 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 704..1592 905..17 4445 100 Minus
Ppcs-RC 4134 CG5629-RC 704..1592 905..17 4445 100 Minus
Ppcs-RA 4134 CG5629-RA 704..1592 905..17 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145925 389..833 2225 100 Plus
3R 32079331 3R 19142088..19142274 203..389 935 100 Plus
3R 32079331 3R 19141879..19142020 63..204 710 100 Plus
3R 32079331 3R 19147135..19147207 833..905 365 100 Plus
3R 32079331 3R 19141596..19141644 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:12:49 has no hits.

BS05240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:32 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PA 54..942 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:15 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PB 54..942 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:27 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 704..1597 11..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 704..1597 11..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:18 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19141591..19141643 11..64 94 <- Plus
3R 19141881..19142018 65..202 100 <- Plus
3R 19142088..19142273 203..388 100 <- Plus
3R 19145481..19145924 389..832 100 <- Plus
3R 19147135..19147207 833..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:27 Download gff for BS05240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967810..14967995 203..388 100 <- Plus
arm_3R 14967313..14967365 11..64 94 <- Plus
arm_3R 14967603..14967740 65..202 100 <- Plus
arm_3R 14971203..14971646 389..832 100 <- Plus
arm_3R 14972857..14972929 833..905 100   Plus

BS05240.5prime Sequence

912 bp (793 high quality bases) assembled on 2005-11-29

> BS05240.5prime
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAGGGACTCGAGATCGAGGAGCCCATCGT
GGNCCGATGTGG

BS05240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5629-PA 942 CG5629-RA 1..886 17..902 4405 99.8 Plus
CG5629-PB 942 CG5629-RB 1..886 17..902 4405 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 649..1545 15..912 4450 99.8 Plus
Ppcs-RC 4134 CG5629-RC 649..1545 15..912 4450 99.8 Plus
Ppcs-RA 4134 CG5629-RA 649..1545 15..912 4450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145925 586..142 2225 100 Minus
3R 32079331 3R 19142088..19142274 772..586 935 100 Minus
3R 32079331 3R 19141889..19142020 902..771 645 99.2 Minus
3R 32079331 3R 19147135..19147262 142..15 640 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:45:44 has no hits.

BS05240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:34 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PA 1..895 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:16 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PB 1..895 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:03 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 637..1545 2..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:18:04 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 637..1545 2..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:18:04 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19142088..19142273 587..772 100 <- Minus
3R 19141880..19142018 773..912 98 <- Minus
3R 19145481..19145924 143..586 100 <- Minus
3R 19147135..19147274 2..142 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:03 Download gff for BS05240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967602..14967740 773..912 98 <- Minus
arm_3R 14967810..14967995 587..772 100 <- Minus
arm_3R 14971203..14971646 143..586 100 <- Minus
arm_3R 14972857..14972996 2..142 96   Minus

BS05240.complete Sequence

974 bp (974 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635082

> BS05240.complete
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATGTGGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGC
GCCAATGAAAGCTTTCTAGACCAT

BS05240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 942 CG5629-PD 1..942 17..958 4710 100 Plus
Ppcs-RC 1122 CG5629-PC 1..942 17..958 4710 100 Plus
Ppcs-RA 942 CG5629-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 649..1592 15..958 4720 100 Plus
Ppcs-RC 4134 CG5629-RC 649..1592 15..958 4720 100 Plus
Ppcs-RA 4134 CG5629-RA 649..1592 15..958 4720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145925 586..142 2225 100 Minus
3R 32079331 3R 19142088..19142274 772..586 935 100 Minus
3R 32079331 3R 19141879..19142020 912..771 710 100 Minus
3R 32079331 3R 19147135..19147262 142..15 640 100 Minus
3R 32079331 3R 19141596..19141644 958..910 245 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:44:31 has no hits.

BS05240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:58 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:01 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 634..1594 2..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:40 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 651..1591 17..957 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:58 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 634..1594 2..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:52 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 651..1591 17..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:52 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19141597..19141643 911..957 100 <- Minus
3R 19141881..19142018 773..910 100 <- Minus
3R 19142088..19142273 587..772 100 <- Minus
3R 19145481..19145924 143..586 100 <- Minus
3R 19147135..19147260 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:40 Download gff for BS05240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967319..14967365 911..957 100 <- Minus
arm_3R 14967603..14967740 773..910 100 <- Minus
arm_3R 14967810..14967995 587..772 100 <- Minus
arm_3R 14971203..14971646 143..586 100 <- Minus
arm_3R 14972857..14972982 17..142 100   Minus

BS05240.pep Sequence

Translation from 16 to 957

> BS05240.pep
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQ*

BS05240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-PD 313 CG5629-PD 1..313 1..313 1625 100 Plus
Ppcs-PA 313 CG5629-PA 1..313 1..313 1625 100 Plus
Ppcs-PC 373 CG5629-PC 1..313 1..313 1625 100 Plus