Clone BS05241 Report

Search the DGRC for BS05241

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptVha26-RA
Protein status:BS05241.pep: full length peptide match
Sequenced Size:713

Clone Sequence Records

BS05241.3prime Sequence

430 bp (374 high quality bases) assembled on 2005-12-02

> BS05241.3prime
ATGGTCTAGAAAGCTTTTAGTCGGTGAATTTGCGATTGACGTTGCGGCCG
AAAAGTGCGTTACGAATCTCGGGCACCAGCTGCTGCGAAATGAGGTCTAA
TCTGGACTCCAGCGTATTGGGCACCTTGATGCGTCCGTTGAGGGCCAGCA
GCTCAACACCACCGCAGGTATCAGCAGAGAGGAAGTCTTTCTCGTCGATG
AACAGCTCGACGTTCTGATTGATCTGGGCCTTGTATTGCTCCACAGCGGC
AGGCAGGACGTTACGTACCAGGGGGACGTCCACCTCGCGGCAGCGCAGGA
TCACCTTGGGCTCCATGATCTGGAACAGGCCCTGGACGATGAGCTTGGTC
AGCACAGTCTCGTACTCGGACTGATTTCTGGTGACCTCGCCGAGACGCTT
GCGGGCATCATCCAGCACGCTGCTCACATG

BS05241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1088-PA 681 Vha26-RA 268..681 430..17 2020 99.5 Minus
CG1088-PB 681 Vha26-RB 268..681 430..17 2020 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 511..925 430..16 2045 99.5 Minus
Vha26-RB 2171 CG1088-RB 413..827 430..16 2045 99.5 Minus
Vha26-RA 2269 CG1088-RA 511..925 430..16 2045 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592880..5593188 430..122 1515 99.4 Minus
3R 32079331 3R 5593245..5593355 126..16 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:22:55 has no hits.

BS05241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:35 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-PA 268..681 17..430 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:17 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1088-PB 268..681 17..430 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:22 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 511..930 7..430 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:54 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 511..930 7..430 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:54 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5592880..5593185 125..430 99 -> Minus
3R 5593247..5593360 7..124 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:22 Download gff for BS05241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1418602..1418907 125..430 99 -> Minus
arm_3R 1418969..1419082 7..124 96   Minus

BS05241.5prime Sequence

408 bp (331 high quality bases) assembled on 2005-12-02

> BS05241.5prime
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCCTGTTCCAGATCAT
GGACCCAA

BS05241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1088-PA 681 Vha26-RA 1..370 17..386 1850 100 Plus
CG1088-PB 681 Vha26-RB 1..370 17..386 1850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 234..635 7..408 1935 99 Plus
Vha26-RB 2171 CG1088-RB 136..537 7..408 1935 99 Plus
Vha26-RA 2269 CG1088-RA 234..635 7..408 1935 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592565..5592784 47..266 1100 100 Plus
3R 32079331 3R 5592853..5592998 257..403 670 98.6 Plus
3R 32079331 3R 5591996..5592038 7..49 185 95.3 Plus
Blast to na_te.dros performed 2015-02-11 10:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 707..732 335..360 103 88.5 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 704..729 335..360 103 88.5 Plus

BS05241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:36 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-PA 1..389 17..406 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:18 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1088-PB 1..389 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:28:34 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 229..632 2..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:02 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 229..632 2..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:02 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5592568..5592780 50..262 100 -> Plus
3R 5592859..5593001 263..406 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:28:34 Download gff for BS05241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1418290..1418502 50..262 100 -> Plus
arm_3R 1418581..1418723 263..406 98   Plus

BS05241.complete Sequence

713 bp assembled on 2008-08-14

GenBank Submission: FJ635083

> BS05241.complete
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCTGTTCCAGATCATG
GAGCCCAAGGTGATCCTGCGCTGCCGCGAGGTGGACGTCCCCCTGGTACG
TAACGTCCTGCCTGCCGCTGTGGAGCAATACAAGGCCCAGATCAATCAGA
ACGTCGAGCTGTTCATCGACGAGAAAGACTTCCTCTCTGCTGATACCTGC
GGTGGTGTTGAGCTGCTGGCCCTCAACGGACGCATCAAGGTGCCCAATAC
GCTGGAGTCCAGATTAGACCTCATTTCGCAGCAGCTGGTGCCCGAGATTC
GTAACGCACTTTTCGGCCGCAACGTCAATCGCAAATTCACCGACTAAAAG
CTTTCTAGACCAT

BS05241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 681 CG1088-PC 1..681 17..697 3405 100 Plus
Vha26-RB 681 CG1088-PB 1..681 17..697 3405 100 Plus
Vha26-RA 681 CG1088-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 234..925 7..698 3430 99.7 Plus
Vha26-RB 2171 CG1088-RB 136..827 7..698 3430 99.7 Plus
Vha26-RA 2269 CG1088-RA 234..925 7..698 3430 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592853..5593188 257..592 1665 99.7 Plus
3R 32079331 3R 5592565..5592784 47..266 1100 100 Plus
3R 32079331 3R 5593245..5593355 588..698 555 100 Plus
3R 32079331 3R 5591996..5592038 7..49 185 95.3 Plus
Blast to na_te.dros performed on 2014-11-27 06:49:44 has no hits.

BS05241.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:48 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 163..864 2..707 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:41 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 244..922 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:26 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 178..856 17..695 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:29 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 244..922 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:29 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5592006..5592038 17..49 100 -> Plus
3R 5592568..5592780 50..262 100 -> Plus
3R 5592859..5593185 263..589 100 -> Plus
3R 5593247..5593352 590..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:41 Download gff for BS05241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1417728..1417760 17..49 100 -> Plus
arm_3R 1418290..1418502 50..262 100 -> Plus
arm_3R 1418581..1418907 263..589 100 -> Plus
arm_3R 1418969..1419074 590..695 100   Plus

BS05241.pep Sequence

Translation from 16 to 696

> BS05241.pep
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTD*

BS05241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-PC 226 CG1088-PC 1..226 1..226 1117 100 Plus
Vha26-PB 226 CG1088-PB 1..226 1..226 1117 100 Plus
Vha26-PA 226 CG1088-PA 1..226 1..226 1117 100 Plus