Clone Sequence Records
BS05241.3prime Sequence
430 bp (374 high quality bases) assembled on 2005-12-02
> BS05241.3prime
ATGGTCTAGAAAGCTTTTAGTCGGTGAATTTGCGATTGACGTTGCGGCCG
AAAAGTGCGTTACGAATCTCGGGCACCAGCTGCTGCGAAATGAGGTCTAA
TCTGGACTCCAGCGTATTGGGCACCTTGATGCGTCCGTTGAGGGCCAGCA
GCTCAACACCACCGCAGGTATCAGCAGAGAGGAAGTCTTTCTCGTCGATG
AACAGCTCGACGTTCTGATTGATCTGGGCCTTGTATTGCTCCACAGCGGC
AGGCAGGACGTTACGTACCAGGGGGACGTCCACCTCGCGGCAGCGCAGGA
TCACCTTGGGCTCCATGATCTGGAACAGGCCCTGGACGATGAGCTTGGTC
AGCACAGTCTCGTACTCGGACTGATTTCTGGTGACCTCGCCGAGACGCTT
GCGGGCATCATCCAGCACGCTGCTCACATG
BS05241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1088-PA | 681 | Vha26-RA | 268..681 | 430..17 | 2020 | 99.5 | Minus |
CG1088-PB | 681 | Vha26-RB | 268..681 | 430..17 | 2020 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 511..925 | 430..16 | 2045 | 99.5 | Minus |
Vha26-RB | 2171 | CG1088-RB | 413..827 | 430..16 | 2045 | 99.5 | Minus |
Vha26-RA | 2269 | CG1088-RA | 511..925 | 430..16 | 2045 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592880..5593188 | 430..122 | 1515 | 99.4 | Minus |
3R | 32079331 | 3R | 5593245..5593355 | 126..16 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:22:55 has no hits.
BS05241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:35 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-PA | 268..681 | 17..430 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:17 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1088-PB | 268..681 | 17..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:22 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 511..930 | 7..430 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:54 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 511..930 | 7..430 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:54 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592880..5593185 | 125..430 | 99 | -> | Minus |
3R | 5593247..5593360 | 7..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:22 Download gff for
BS05241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1418602..1418907 | 125..430 | 99 | -> | Minus |
arm_3R | 1418969..1419082 | 7..124 | 96 | | Minus |
BS05241.5prime Sequence
408 bp (331 high quality bases) assembled on 2005-12-02
> BS05241.5prime
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCCTGTTCCAGATCAT
GGACCCAA
BS05241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1088-PA | 681 | Vha26-RA | 1..370 | 17..386 | 1850 | 100 | Plus |
CG1088-PB | 681 | Vha26-RB | 1..370 | 17..386 | 1850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 234..635 | 7..408 | 1935 | 99 | Plus |
Vha26-RB | 2171 | CG1088-RB | 136..537 | 7..408 | 1935 | 99 | Plus |
Vha26-RA | 2269 | CG1088-RA | 234..635 | 7..408 | 1935 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592565..5592784 | 47..266 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 5592853..5592998 | 257..403 | 670 | 98.6 | Plus |
3R | 32079331 | 3R | 5591996..5592038 | 7..49 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2015-02-11 10:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 707..732 | 335..360 | 103 | 88.5 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 704..729 | 335..360 | 103 | 88.5 | Plus |
BS05241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:36 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-PA | 1..389 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:18 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1088-PB | 1..389 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:28:34 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 229..632 | 2..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:02 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 229..632 | 2..406 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:02 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592568..5592780 | 50..262 | 100 | -> | Plus |
3R | 5592859..5593001 | 263..406 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:28:34 Download gff for
BS05241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1418290..1418502 | 50..262 | 100 | -> | Plus |
arm_3R | 1418581..1418723 | 263..406 | 98 | | Plus |
BS05241.complete Sequence
713 bp assembled on 2008-08-14
GenBank Submission: FJ635083
> BS05241.complete
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCTGTTCCAGATCATG
GAGCCCAAGGTGATCCTGCGCTGCCGCGAGGTGGACGTCCCCCTGGTACG
TAACGTCCTGCCTGCCGCTGTGGAGCAATACAAGGCCCAGATCAATCAGA
ACGTCGAGCTGTTCATCGACGAGAAAGACTTCCTCTCTGCTGATACCTGC
GGTGGTGTTGAGCTGCTGGCCCTCAACGGACGCATCAAGGTGCCCAATAC
GCTGGAGTCCAGATTAGACCTCATTTCGCAGCAGCTGGTGCCCGAGATTC
GTAACGCACTTTTCGGCCGCAACGTCAATCGCAAATTCACCGACTAAAAG
CTTTCTAGACCAT
BS05241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 681 | CG1088-PC | 1..681 | 17..697 | 3405 | 100 | Plus |
Vha26-RB | 681 | CG1088-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Vha26-RA | 681 | CG1088-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 234..925 | 7..698 | 3430 | 99.7 | Plus |
Vha26-RB | 2171 | CG1088-RB | 136..827 | 7..698 | 3430 | 99.7 | Plus |
Vha26-RA | 2269 | CG1088-RA | 234..925 | 7..698 | 3430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592853..5593188 | 257..592 | 1665 | 99.7 | Plus |
3R | 32079331 | 3R | 5592565..5592784 | 47..266 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 5593245..5593355 | 588..698 | 555 | 100 | Plus |
3R | 32079331 | 3R | 5591996..5592038 | 7..49 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:44 has no hits.
BS05241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:48 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RB | 163..864 | 2..707 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:41 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 244..922 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:26 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RB | 178..856 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:29 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 244..922 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:29 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592006..5592038 | 17..49 | 100 | -> | Plus |
3R | 5592568..5592780 | 50..262 | 100 | -> | Plus |
3R | 5592859..5593185 | 263..589 | 100 | -> | Plus |
3R | 5593247..5593352 | 590..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:41 Download gff for
BS05241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1417728..1417760 | 17..49 | 100 | -> | Plus |
arm_3R | 1418290..1418502 | 50..262 | 100 | -> | Plus |
arm_3R | 1418581..1418907 | 263..589 | 100 | -> | Plus |
arm_3R | 1418969..1419074 | 590..695 | 100 | | Plus |
BS05241.pep Sequence
Translation from 16 to 696
> BS05241.pep
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTD*
BS05241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-PC | 226 | CG1088-PC | 1..226 | 1..226 | 1117 | 100 | Plus |
Vha26-PB | 226 | CG1088-PB | 1..226 | 1..226 | 1117 | 100 | Plus |
Vha26-PA | 226 | CG1088-PA | 1..226 | 1..226 | 1117 | 100 | Plus |