Clone Sequence Records
BS05244.3prime Sequence
945 bp (809 high quality bases) assembled on 2005-12-02
> BS05244.3prime
ATGGTCTAGAAAGCTTCTAAACTCCCAGCAAAGTGGAAAGTTCACAGACT
GCTCTGGGTTTCGATTGCGGGGAACACGCCTGTCGCACGGCCATCTCCCA
GGTGTCCAACAAATGTGAGAGCGAGTAGTTCTTGGGCAACTTCGAGATGC
GGGCAATGAGAGCTTGTTGCACCGTCTGCAGGAAGGGGGTGGCTGAATAC
TCCTGTTCCGCCAAGGAGCAGTCCGGAGCCTGCCACGGATATTCCTCCGG
CACACTCACACTTACGGGCGGAACACTAGGCAACCTTTTGTCATCCAGGC
AACAAATCAAGCGAATGGCCTTGTTGTTGATCTGTGACGTGGTGTCCAAT
TTCACTTTAAACTTGGTATCGAGCCTAGCAATTTCCCCTTGAAGCACATG
TGGCACTTCCTGCTCAAAAGACGTGGACTTTTCTTCCACCCGAGGTCGCT
TTGCGGGCACTGGAGCTGTTATATCCGTACCAAAGAGCAGCTCCAAAGTG
GGTCGGAATGTGCGATACAATGTGTGATTTGCTACAGGACTTTGCAGCGT
TGTATTTATAACCTCCAGCAATGGATTTGAGGATTTACCAAACTGCTGGC
CGGAATAGGAGATGAGATCCATCTTCTCAAGCGCTTTTTCACACTTAAGT
AGAGTCTCCAGCGGCACGCGCTGTGTAGGATTGCAGAGAATCTCCAACAA
CTTGCTCATCTTTGTCATCTTCTCCACATTGGTTCCGTCGTTACTGATCT
TGGCAAGCATCCGCTTCAGTGGCTCAATGTACTTGGTCAGCTGCTTGTAT
TTCTCGCGGTATAATGCCTCCTCCTGGGGATTAAATGGACTGTTACCAGT
AACCTGGCCAGGAGTGTTGATCGAGGCACTGGGAGACTGCTGCCGAATAT
TGCGCTGCGAATTCTGCATCTGCATCATCTGCGGACTGGACTGGG
BS05244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4184-PA | 2250 | MED15-RA | 1322..2250 | 945..17 | 4620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED15-RA | 2592 | CG4184-RA | 1422..2350 | 945..17 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 475233..475802 | 586..17 | 2850 | 100 | Minus |
2L | 23513712 | 2L | 474550..474765 | 945..730 | 1065 | 99.5 | Minus |
2L | 23513712 | 2L | 475036..475178 | 729..587 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:57:40 has no hits.
BS05244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:41 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-PA | 1322..2250 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:24 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4184-PA | 1322..2250 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:13:11 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 1422..2350 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:56:02 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 1422..2350 | 17..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:56:02 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 474550..474765 | 730..945 | 99 | -> | Minus |
2L | 475036..475178 | 587..729 | 100 | -> | Minus |
2L | 475233..475802 | 17..586 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:13:11 Download gff for
BS05244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 474550..474765 | 730..945 | 99 | -> | Minus |
arm_2L | 475036..475178 | 587..729 | 100 | -> | Minus |
arm_2L | 475233..475802 | 17..586 | 100 | | Minus |
BS05244.5prime Sequence
893 bp (817 high quality bases) assembled on 2005-12-02
> BS05244.5prime
GAAGTTATCAGTCGACATGACCGAGGACTGGCAGAGTCAAAAGTTTCGTC
AGAATGTCATCTCCAAAATCCACGACTTATTGCCACCGAATGCGCAGGAC
CAGACTAAAAATGCCGGCGTTATGGAGAACCACATATTTCGAAAGTCGCG
TACTAAGGACGAGTATTTAGGTCTGGTAGCCAAGCTCTTTATGCATTACA
AAGACATGTCACGAAAGTCCCAGCAACAGCAGCAGCAGCAACAACAGCAG
GGTGGCCCGCCCCCAAATGCGGAAATGGGCGGCGGGCAGAATATGATGCA
GGATCCACTGAACGCACTTCAGAATCTTGCCAGTCAAGGAAATCGCAATC
CCCAGATGATGCCCATGGGCGCCGGAGGAGGAGCGCCAGTGCCCGGTGGC
CCCGGAACTGCCTCTAACTTGCTACAATCCCTGAATCAGCAGCGCCCTGG
ACAGCAGCAAATGCAGCCCATGTCAAATATCCGTGGCCAAATGCCCATGG
GTGCCGGAGGAGCTGGTGCCCAGCAGATGATGCAGGTTCAACAGATGCAG
CAAGGTGGGAATGCCCCCGGAGTGATGAACGTAATGGGCGCCGGCGGCGG
GCAAAATCAGGGACAGATTGTCGGTAATCCCGGGCAGCAAATGGGCGTGG
GCGTTGGCATGCCTAACCAAATGGTAGGACCGGGACCGAACAGTGGACCC
GCCGTTGGCGGAGCTGGCGGACCAAATGCTGCTCCAGGAGCAGGCGGACC
CGGGCCAAATCAGATGCAGGGCGGACCAATGAACGTAAATGCCATGCAAC
AGATGCCTCCCATGCAGCAGATTCAGCAGAACCAAATTGGGGATGGGGCA
TGAATCCCATGATGCGGATGGGGCCAAGGCACGGAATGGGCGG
BS05244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4184-PA | 2250 | MED15-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG10572-PA | 1365 | Cdk8-RA | 1279..1308 | 221..250 | 150 | 100 | Plus |
CG10555-PA | 2781 | CG10555-RA | 883..912 | 221..250 | 150 | 100 | Plus |
CG9755-PE | 2808 | pum-RE | 340..369 | 221..250 | 150 | 100 | Plus |
CG9755-PB | 3558 | pum-RB | 1090..1119 | 221..250 | 150 | 100 | Plus |
CG9755-PA | 4602 | pum-RA | 2134..2163 | 221..250 | 150 | 100 | Plus |
CG9755-PD | 4602 | pum-RD | 2134..2163 | 221..250 | 150 | 100 | Plus |
CG9755-PC | 4602 | pum-RC | 2134..2163 | 221..250 | 150 | 100 | Plus |
CG8118-PA | 4785 | mam-RA | 1939..1968 | 221..250 | 150 | 100 | Plus |
CG8118-PB | 4785 | mam-RB | 1939..1968 | 221..250 | 150 | 100 | Plus |
CG4013-PA | 10815 | Smr-RA | 5422..5451 | 221..250 | 150 | 100 | Plus |
CG4013-PB | 10815 | Smr-RB | 5422..5451 | 221..250 | 150 | 100 | Plus |
CG4013-PC | 10815 | Smr-RC | 5422..5451 | 221..250 | 150 | 100 | Plus |
CG10883-PA | 432 | CG10883-RA | 134..162 | 250..222 | 145 | 100 | Minus |
CG17724-PA | 1557 | CG17724-RA | 1486..1514 | 221..249 | 145 | 100 | Plus |
CG4136-PA | 2514 | CG4136-RA | 187..215 | 221..249 | 145 | 100 | Plus |
CG9369-PA | 2049 | m-RA | 1962..1989 | 223..250 | 140 | 100 | Plus |
CG5580-PA | 6843 | sbb-RA | 5738..5765 | 219..246 | 140 | 100 | Plus |
CG4184-PA | 2250 | MED15-RA | 828..854 | 846..872 | 135 | 100 | Plus |
CG2904-PA | 5139 | ec-RA | 4324..4350 | 224..250 | 135 | 100 | Plus |
CG2904-PA | 5139 | ec-RA | 4357..4383 | 224..250 | 135 | 100 | Plus |
CG6884-PA | 531 | MED11-RA | 380..411 | 219..250 | 135 | 96.8 | Plus |
CG9731-PA | 789 | CG9731-RA | 346..372 | 224..250 | 135 | 100 | Plus |
CG3075-PA | 1806 | CG3075-RA | 1492..1518 | 221..247 | 135 | 100 | Plus |
CG32045-PD | 4890 | fry-RD | 538..564 | 221..247 | 135 | 100 | Plus |
CG9696-PD | 9552 | dom-RD | 9490..9516 | 221..247 | 135 | 100 | Plus |
CG9696-PA | 9597 | dom-RA | 9490..9516 | 221..247 | 135 | 100 | Plus |
CG32045-PB | 10440 | fry-RB | 538..564 | 221..247 | 135 | 100 | Plus |
CG33106-PA | 12006 | mask-RA | 3574..3600 | 224..250 | 135 | 100 | Plus |
CG33106-PB | 12006 | mask-RB | 3574..3600 | 224..250 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED15-RA | 2592 | CG4184-RA | 101..975 | 17..893 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 473223..473995 | 70..842 | 3835 | 99.7 | Plus |
2L | 23513712 | 2L | 473113..473165 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 674..777 | 467..367 | 125 | 61.9 | Minus |
BS05244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:42 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-PA | 1..875 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:26 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4184-PA | 1..875 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:43:16 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 101..975 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:33 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 101..975 | 17..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:33 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 474054..474103 | 843..893 | 94 | | Plus |
2L | 473113..473165 | 17..69 | 100 | -> | Plus |
2L | 473223..473994 | 70..842 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:43:16 Download gff for
BS05244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 473113..473165 | 17..69 | 100 | -> | Plus |
arm_2L | 473223..473994 | 70..842 | 99 | -> | Plus |
arm_2L | 474054..474103 | 843..893 | 94 | | Plus |
BS05244.complete Sequence
2282 bp assembled on 2010-01-09
GenBank Submission: KX799258
> BS05244.complete
GAAGTTATCAGTCGACATGACCGAGGACTGGCAGAGTCAAAAGTTTCGTC
AGAATGTCATCTCCAAAATCCACGACTTATTGCCACCGAATGCGCAGGAC
CAGACTAAAAATGCCGGCGTTATGGAGAACCACATATTTCGAAAGTCGCG
TACTAAGGACGAGTATTTAGGTCTGGTAGCCAAGCTCTTTATGCATTACA
AAGACATGTCACGAAAGTCCCAGCAACAGCAGCAGCAGCAACAACAGCAG
GGTGGCCCGCCCCCAAATGCGGAAATGGGCGGCGGGCAGAATATGATGCA
GGATCCACTGAACGCACTTCAGAATCTTGCCAGTCAAGGAAATCGCAATC
CCCAGATGATGCCCATGGGCGCCGGAGGAGGAGCGCCAGTGCCCGGTGGC
CCCGGAACTGCCTCTAACTTGCTACAATCCCTGAATCAGCAGCGCCCTGG
ACAGCAGCAAATGCAGCCCATGTCAAATATCCGTGGCCAAATGCCCATGG
GTGCCGGAGGAGCTGGTGCCCAGCAGATGATGCAGGTTCAACAGATGCAG
CAAGGTGGGAATGCCCCCGGAGTGATGAACGTAATGGGCGCCGGCGGCGG
GCAAAATCAGGGACAGATTGTCGGTAATCCCGGGCAGCAAATGGGCGTGG
GCGTTGGCATGCCTAACCAAATGGTAGGACCGGGACCGAACAGTGGACCC
GCCGTTGGCGGAGCTGGCGGACCAAATGCTGCTCCAGGAGCAGGCGGACC
CGGGCCAAATCAGATGCAGGGCGGACCAATGAACGTAAATGCCATGCAAC
AGATGCCTCCCATGCAGCAGATTCAGCAGAACCAATTGGGGATGGGCATG
AATCCCATGATGCGGATGGGCCAAGGCAACGGAATGGGCGGGCCACAAGG
AATGCCCGGCCAGGGTATGCAGGGAATGCCGCAGGGACCACACAATGTAG
TTGGCGGACCTGCGGGTCAGCAACAAGTGGGTGGAGCAGGCCTGCCCCCC
AACGCTGTGCAACAGGGAGGAATGAACCCCATGGGCGGTATGGGCGTGAA
CATGCCACCGAATTTGCAGCAAAAACCAAATATGCCCATGGGCCAGGCGG
GTCAGATGTTTCCCGGTAATCGAGGAGGTGTGGGAGTGGGTGGACAGCAG
CCGGGACAGCCCTTCATGCGATCCAGTCCCTCTCCAGCAGATGCTCAGCA
ATTACAGCAACAGGCGCAGCTTCAGCAAATGCAACAACAGCAGCAACAGC
TGGTGGTGGGCAATCAGACGCCAACACAGCAACCTCCGACTCCGCAGATG
CCCACGCCCAATATGATTCCTAGTCCGGCACTGGTTCCCCAGTCCAGTCC
GCAGATGATGCAGATGCAGAATTCGCAGCGCAATATTCGGCAGCAGTCTC
CAAGTGCCTCGATCAACACTCCTGGCCAGGTTACTGGTAACAGTCCATTT
AATCCCCAGGAGGAGGCATTATACCGCGAGAAATACAAGCAGCTGACCAA
GTACATTGAGCCACTGAAGCGGATGCTTGCCAAGATCAGTAACGACGGAA
CCAATGTGGAGAAGATGACAAAGATGAGCAAGTTGTTGGAGATTCTCTGC
AATCCTACACAGCGCGTGCCGCTGGAGACTCTACTTAAGTGTGAAAAAGC
GCTTGAGAAGATGGATCTCATCTCCTATTCCGGCCAGCAGTTTGGTAAAT
CCTCAAATCCATTGCTGGAGGTTATAAATACAACGCTGCAAAGTCCTGTA
GCAAATCACACATTGTATCGCACATTCCGACCCACTTTGGAGCTGCTCTT
TGGTACGGATATAACAGCTCCAGTGCCCGCAAAGCGACCTCGGGTGGAAG
AAAAGTCCACGTCTTTTGAGCAGGAAGTGCCACATGTGCTTCAAGGGGAA
ATTGCTAGGCTCGATACCAAGTTTAAAGTGAAATTGGACACCACGTCACA
GATCAACAACAAGGCCATTCGCTTGATTTGTTGCCTGGATGACAAAAGGT
TGCCTAGTGTTCCGCCCGTAAGTGTGAGTGTGCCGGAGGAATATCCGTGG
CAGGCTCCGGACTGCTCCTTGGCGGAACAGGAGTATTCAGCCACCCCCTT
CCTGCAGACGGTGCAACAAGCTCTCATTGCCCGCATCTCGAAGTTGCCCA
AGAACTACTCGCTCTCACATTTGTTGGACACCTGGGAGATGGCCGTGCGA
CAGGCGTGTTCCCCGCAATCGAAACCCAGAGCAGTCTGTGAACTTTCCAC
TTTGCTGGGAGTTTAGAAGCTTTCTAGACCAT
BS05244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED15-RA | 2250 | CG4184-PA | 1..2250 | 17..2266 | 11250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED15-RA | 2592 | CG4184-RA | 101..2350 | 17..2266 | 11250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 473223..473994 | 70..841 | 3860 | 100 | Plus |
2L | 23513712 | 2L | 474053..474765 | 841..1553 | 3565 | 100 | Plus |
2L | 23513712 | 2L | 475233..475802 | 1697..2266 | 2850 | 100 | Plus |
2L | 23513712 | 2L | 475036..475178 | 1554..1696 | 715 | 100 | Plus |
2L | 23513712 | 2L | 473113..473165 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6910 | 1144..1252 | 170 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2421 | 1185..1250 | 161 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6873 | 1196..1313 | 152 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1141 | 1196..1252 | 152 | 77.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6824 | 1185..1250 | 151 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 1196..1250 | 149 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6769 | 1175..1252 | 149 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6881 | 1144..1283 | 146 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6790 | 1196..1252 | 143 | 75.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6893 | 1144..1283 | 142 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2754..2820 | 1182..1250 | 141 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 1183..1252 | 136 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2472 | 1185..1250 | 136 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2419 | 1196..1296 | 134 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2360 | 1185..1252 | 133 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6884 | 1144..1250 | 127 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6957 | 1184..1272 | 124 | 64.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3309 | 1205..1250 | 124 | 78.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1108 | 1205..1252 | 123 | 72.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 918..1011 | 1144..1244 | 117 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1587 | 1175..1247 | 115 | 63.5 | Plus |
BS05244.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:01 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 93..2342 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:49 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 101..2350 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:46 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 93..2342 | 17..2266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:07 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED15-RA | 101..2350 | 17..2266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:07 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 473113..473165 | 17..69 | 100 | -> | Plus |
2L | 473223..473994 | 70..841 | 100 | -> | Plus |
2L | 474054..474765 | 842..1553 | 100 | -> | Plus |
2L | 475036..475178 | 1554..1696 | 100 | -> | Plus |
2L | 475233..475802 | 1697..2266 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:49 Download gff for
BS05244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 473113..473165 | 17..69 | 100 | -> | Plus |
arm_2L | 473223..473994 | 70..841 | 100 | -> | Plus |
arm_2L | 474054..474765 | 842..1553 | 100 | -> | Plus |
arm_2L | 475036..475178 | 1554..1696 | 100 | -> | Plus |
arm_2L | 475233..475802 | 1697..2266 | 100 | | Plus |
BS05244.pep Sequence
Translation from 16 to 2265
> BS05244.pep
MTEDWQSQKFRQNVISKIHDLLPPNAQDQTKNAGVMENHIFRKSRTKDEY
LGLVAKLFMHYKDMSRKSQQQQQQQQQQGGPPPNAEMGGGQNMMQDPLNA
LQNLASQGNRNPQMMPMGAGGGAPVPGGPGTASNLLQSLNQQRPGQQQMQ
PMSNIRGQMPMGAGGAGAQQMMQVQQMQQGGNAPGVMNVMGAGGGQNQGQ
IVGNPGQQMGVGVGMPNQMVGPGPNSGPAVGGAGGPNAAPGAGGPGPNQM
QGGPMNVNAMQQMPPMQQIQQNQLGMGMNPMMRMGQGNGMGGPQGMPGQG
MQGMPQGPHNVVGGPAGQQQVGGAGLPPNAVQQGGMNPMGGMGVNMPPNL
QQKPNMPMGQAGQMFPGNRGGVGVGGQQPGQPFMRSSPSPADAQQLQQQA
QLQQMQQQQQQLVVGNQTPTQQPPTPQMPTPNMIPSPALVPQSSPQMMQM
QNSQRNIRQQSPSASINTPGQVTGNSPFNPQEEALYREKYKQLTKYIEPL
KRMLAKISNDGTNVEKMTKMSKLLEILCNPTQRVPLETLLKCEKALEKMD
LISYSGQQFGKSSNPLLEVINTTLQSPVANHTLYRTFRPTLELLFGTDIT
APVPAKRPRVEEKSTSFEQEVPHVLQGEIARLDTKFKVKLDTTSQINNKA
IRLICCLDDKRLPSVPPVSVSVPEEYPWQAPDCSLAEQEYSATPFLQTVQ
QALIARISKLPKNYSLSHLLDTWEMAVRQACSPQSKPRAVCELSTLLGV*
BS05244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED15-PA | 749 | CG4184-PA | 1..749 | 1..749 | 3953 | 100 | Plus |
nej-PE | 3266 | CG15319-PE | 2784..3166 | 81..465 | 281 | 31.8 | Plus |
nej-PB | 3276 | CG15319-PB | 2794..3176 | 81..465 | 281 | 31.8 | Plus |
nej-PD | 3276 | CG15319-PD | 2794..3176 | 81..465 | 281 | 31.8 | Plus |
nej-PC | 3282 | CG15319-PC | 2800..3182 | 81..465 | 281 | 31.8 | Plus |
nej-PE | 3266 | CG15319-PE | 140..469 | 59..415 | 231 | 30.3 | Plus |
nej-PB | 3276 | CG15319-PB | 140..469 | 59..415 | 231 | 30.3 | Plus |
nej-PD | 3276 | CG15319-PD | 140..469 | 59..415 | 231 | 30.3 | Plus |
nej-PE | 3266 | CG15319-PE | 2581..2934 | 88..470 | 226 | 27.9 | Plus |
nej-PB | 3276 | CG15319-PB | 2591..2944 | 88..470 | 226 | 27.9 | Plus |
nej-PD | 3276 | CG15319-PD | 2591..2944 | 88..470 | 226 | 27.9 | Plus |
nej-PE | 3266 | CG15319-PE | 2535..2913 | 114..483 | 210 | 26.1 | Plus |
nej-PB | 3276 | CG15319-PB | 2545..2923 | 114..483 | 210 | 26.1 | Plus |
nej-PD | 3276 | CG15319-PD | 2545..2923 | 114..483 | 210 | 26.1 | Plus |
nej-PE | 3266 | CG15319-PE | 2875..3201 | 62..424 | 190 | 26.9 | Plus |
nej-PB | 3276 | CG15319-PB | 2885..3211 | 62..424 | 190 | 26.9 | Plus |
nej-PD | 3276 | CG15319-PD | 2885..3211 | 62..424 | 190 | 26.9 | Plus |
nej-PE | 3266 | CG15319-PE | 28..446 | 99..471 | 189 | 27.6 | Plus |
nej-PB | 3276 | CG15319-PB | 28..446 | 99..471 | 189 | 27.6 | Plus |
nej-PD | 3276 | CG15319-PD | 28..446 | 99..471 | 189 | 27.6 | Plus |
nej-PE | 3266 | CG15319-PE | 132..466 | 88..457 | 179 | 30.2 | Plus |
nej-PE | 3266 | CG15319-PE | 638..973 | 69..427 | 179 | 26.1 | Plus |
nej-PB | 3276 | CG15319-PB | 132..466 | 88..457 | 179 | 30.2 | Plus |
nej-PB | 3276 | CG15319-PB | 638..973 | 69..427 | 179 | 26.1 | Plus |
nej-PD | 3276 | CG15319-PD | 132..466 | 88..457 | 179 | 30.2 | Plus |
nej-PD | 3276 | CG15319-PD | 638..973 | 69..427 | 179 | 26.1 | Plus |
nej-PE | 3266 | CG15319-PE | 941..1359 | 3..479 | 177 | 24.4 | Plus |
nej-PB | 3276 | CG15319-PB | 941..1359 | 3..479 | 177 | 24.4 | Plus |
nej-PD | 3276 | CG15319-PD | 941..1359 | 3..479 | 177 | 24.4 | Plus |
nej-PE | 3266 | CG15319-PE | 2456..2813 | 124..491 | 172 | 26.2 | Plus |
nej-PB | 3276 | CG15319-PB | 2466..2823 | 124..491 | 172 | 26.2 | Plus |
nej-PD | 3276 | CG15319-PD | 2466..2823 | 124..491 | 172 | 26.2 | Plus |
nej-PE | 3266 | CG15319-PE | 284..502 | 90..317 | 165 | 29.6 | Plus |
nej-PB | 3276 | CG15319-PB | 284..502 | 90..317 | 165 | 29.6 | Plus |
nej-PD | 3276 | CG15319-PD | 284..502 | 90..317 | 165 | 29.6 | Plus |
nej-PE | 3266 | CG15319-PE | 43..390 | 158..477 | 161 | 27.3 | Plus |
nej-PB | 3276 | CG15319-PB | 43..390 | 158..477 | 161 | 27.3 | Plus |
nej-PD | 3276 | CG15319-PD | 43..390 | 158..477 | 161 | 27.3 | Plus |