Clone BS05246 Report

Search the DGRC for BS05246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptAppl-RA
Protein status:BS05246.pep: full length peptide match
Sequenced Size:2696

Clone Sequence Records

BS05246.complete Sequence

2696 bp assembled on 2009-12-07

GenBank Submission: KX794259

> BS05246.complete
GAAGTTATCAGTCGACATGTGCGCCGCGCTGCGTCGTAATTTGTTGCTGA
GGAGCCTCTGGGTCGTCCTGGCCATTGGCACTGCTCAGGTTCAGGCCGCA
TCGCCGCGATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAAT
CTACCAGCCGCAGTATCTTTCCGAGGAGGGACGCTGGGTGACGGACCTTA
GCAAGAAGACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTT
GATTACTGCAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGA
GTCGTCCCACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGA
ATGCGGCTAAGTGCAAGGGATCCCACCGATGGATCAAGCCATTCCGCTGT
CTCGGACCATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTT
CGACCACATCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACC
AAACCGGAGCAGCCGCTTGCCAGGAGCGCGGAATGCAGATGCGCAGCTTC
GCCATGCTTCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGT
CTGCTGTCCCAAGCACTTCAAAACCGATGAAATTCATGTAAAGAAGACCG
ACTTGCCGGTGATGCCGGCAGCTCAGATCAATAGCGCCAATGACGAGCTG
GTGATGAATGACGAAGACGACAGCAACGACTCGAACTACTCGAAGGATGC
CAATGAAGACGATCTGGACGATGAGGATGATTTGATGGGTGATGATGAGG
AGGACGATATGGTGGCGGATGAGGCAGCTACCGCAGGCGGAAGCCCCAAC
ACCGGTTCCTCAGGTGACTCAAATAGCGGATCTTTGGATGACATAAATGC
GGAGTACGATAGCGGAGAGGAGGGTGACAACTACGAGGAGGACGGTGCTG
GTTCCGAAAGCGAGGCTGAGGTTGAGGCCTCCTGGGATCAGAGCGGAGGG
GCGAAGGTTGTGTCCCTAAAAAGCGATTCCTCATCCCCGTCTAGCGCTCC
GGTTGCTCCCGCCCCCGAGAAGGCACCTGTGAAGTCCGAATCGGTCACGA
GCACTCCTCAGCTGTCTGCCTCTGCCGCTGCTTTTGTAGCTGCCAATTCT
GGAAACTCGGGAACCGGAGCCGGAGCACCACCATCCACTGCACAACCCAC
ATCGGATCCCTACTTCACCCATTTTGATCCGCACTACGAGCACCAGAGCT
ACAAAGTAAGTCAGAAACGCCTTGAGGAATCGCACCGCGAGAAGGTCACG
CGCGTTATGAAGGACTGGTCCGATCTCGAGGAGAAGTACCAGGACATGCG
CCTAGCGGATCCCAAGGCAGCCCAGTCATTTAAGCAGCGGATGACGGCTC
GCTTCCAGACTTCTGTTCAGGCACTCGAGGAAGAAGGCAACGCCGAGAAG
CACCAGCTGGCCGCCATGCACCAGCAGCGCGTTTTGGCCCACATCAACCA
GCGGAAGCGCGAGGCCATGACCTGCTACACCCAGGCCCTGACTGAGCAGC
CCCCGAATGCCCACCACGTTGAGAAGTGTCTACAGAAGCTGCTGCGCGCC
CTGCACAAGGACCGGGCCCACGCCTTGGCCCACTACCGGCACCTATTGAA
CTCTGGAGGACCTGGTGGACTAGAAGCAGCTGCTTCGGAGCGTCCACGCA
CGCTGGAGCGCCTAATCGACATCGATAGAGCCGTAAACCAGTCGATGACC
ATGCTCAAGCGCTATCCGGAGCTCTCCGCCAAGATTGCCCAGCTGATGAA
TGACTACATTCTGGCACTGCGCAGCAAGGATGACATTCCCGGCTCCTCGC
TGGGAATGAGCGAGGAGGCGGAGGCCGGCATTCTGGACAAGTACCGCGTC
GAGATCGAGCGCAAGGTGGCCGAGAAAGAGCGACTACGGCTGGCGGAGAA
GCAGCGCAAGGAGCAGCGTGCCGCTGAGCGGGAAAAACTGCGCGAGGAGA
AGCTGCGCCTGGAGGCCAAAAAGGTGGACGACATGCTCAAGTCACAGGTG
GCCGAGCAGCAGTCCCAGCCGACCCAGTCGTCAACCCAATCGCAGGCGCA
GCAGCAGCAGCAGGAAAAGAGCCTTCCCGGCAAGGAGCTGGGTCCCGACG
CAGCTCTGGTCACAGCGGCCAATCCCAACCTAGAGACCACCAAAAGCGAG
AAGGATCTGTCGGACACTGAGTATGGGGAGGCAACAGTGAGCAGCACCAA
GGTGCAGACCGTGCTGCCAACGGTCGACGACGATGCCGTCCAGCGGGCAG
TGGAGGACGTAGCCGCCGCCGTCGCCCACCAGGAGGCCGAGCCGCAGGTG
CAGCACTTCATGACCCACGACCTGGGCCACCGCGAATCGAGCTTCTCGCT
GCGCCGCGAGTTCGCGCAACATGCACACGCGGCCAAAGAGGGCCGCAACG
TCTACTTCACGCTCTCCTTCGCCGGGATCGCCCTGATGGCGGCCGTTTTC
GTTGGCGTGGCCGTGGCCAAATGGCGAACATCGCGCTCGCCGCACGCCCA
GGGCTTCATCGAGGTCGACCAGAACGTCACAACACACCATCCCATTGTGC
GCGAGGAGAAGATCGTGCCCAACATGCAGATCAATGGGTACGAGAATCCG
ACCTACAAGTATTTCGAAGTGAAAGAGTAAAAGCTTTCTAGACCAT

BS05246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RA 2664 CG7727-PA 1..2664 17..2680 13320 100 Plus
Appl-RF 2667 CG7727-PF 1..2667 17..2680 13150 99.6 Plus
Appl-RE 2652 CG7727-PE 1..2652 17..2680 13105 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RA 5422 CG7727-RA 207..2870 17..2680 13320 100 Plus
Appl-RF 5425 CG7727-RF 207..2873 17..2680 13150 99.6 Plus
Appl-RE 6324 CG7727-RE 207..2858 17..2680 13105 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 574196..574878 1559..2241 3415 100 Plus
X 23542271 X 571427..572070 624..1267 3220 100 Plus
X 23542271 X 571133..571352 404..623 1100 100 Plus
X 23542271 X 575167..575350 2389..2572 920 100 Plus
X 23542271 X 560601..560777 90..266 885 100 Plus
X 23542271 X 573851..574003 1407..1559 765 100 Plus
X 23542271 X 574940..575089 2240..2389 750 100 Plus
X 23542271 X 570860..571001 264..405 710 100 Plus
X 23542271 X 572149..572289 1268..1408 705 100 Plus
X 23542271 X 575466..575578 2568..2680 565 100 Plus
X 23542271 X 531799..531877 17..95 395 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:26:04 has no hits.

BS05246.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:59 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 181..2842 17..2678 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:09 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 238..2899 17..2678 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:20 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 181..2842 17..2678 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:22 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 207..2868 17..2678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:22 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
X 572149..572289 1268..1408 100 -> Plus
X 573853..574002 1409..1558 100 -> Plus
X 531799..531876 17..94 100 -> Plus
X 560606..560776 95..265 100 -> Plus
X 570862..571000 266..404 100 -> Plus
X 571134..571352 405..623 100 -> Plus
X 571427..572070 624..1267 100 -> Plus
X 574196..574878 1559..2241 100 -> Plus
X 574942..575089 2242..2389 100 -> Plus
X 575168..575350 2390..2572 100 -> Plus
X 575471..575576 2573..2678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:09 Download gff for BS05246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 469504..469609 2573..2678 100   Plus
arm_X 454639..454809 95..265 100 -> Plus
arm_X 464895..465033 266..404 100 -> Plus
arm_X 425832..425909 17..94 100 -> Plus
arm_X 465167..465385 405..623 100 -> Plus
arm_X 465460..466103 624..1267 100 -> Plus
arm_X 466182..466322 1268..1408 100 -> Plus
arm_X 467886..468035 1409..1558 100 -> Plus
arm_X 468229..468911 1559..2241 100 -> Plus
arm_X 468975..469122 2242..2389 100 -> Plus
arm_X 469201..469383 2390..2572 100 -> Plus

BS05246.3prime Sequence

900 bp (851 high quality bases) assembled on 2005-12-02

> BS05246.3prime
ATGGTCTAGAAAGCTTTTACTCTTTCACTTCGAAATACTTGTAGGTCGGA
TTCTCGTACCCATTGATCTGCATGTTGGGCACGATCTTCTCCTCGCGCAC
AATGGGATGGTGTGTTGTGACGTTCTGGTCGACCTCGATGAAGCCCTGGG
CGTGCGGCGAGCGCGATGTTCGCCATTTGGCCACGGCCACGCCAACGAAA
ACGGCCGCCATCAGGGCGATCCCGGCGAAGGAGAGCGTGAAGTAGACGTT
GCGGCCCTCTTTGGCCGCGTGTGCATGTTGCGCGAACTCGCGGCGCAGCG
AGAAGCTCGATTCGCGGTGGCCCAGGTCGTGGGTCATGAAGTGCTGCACC
TGCGGCTCGGCCTCCTGGTGGGCGACGGCGGCGGCTACGTCCTCCACTGC
CCGCTGGACGGCATCGTCGTCGACCGTTGGCAGCACGGTCTGCACCTTGG
TGCTGCTCACTGTTGCCTCCCCATACTCAGTGTCCGACAGATCCTTCTCG
CTTTTGGTGGTCTCTAGGTTGGGATTGGCCGCTGTGACCAGAGCTGCGTC
GGGACCCAGCTCCTTGCCGGGAAGGCTCTTTTCCTGCTGCTGCTGCTGCG
CCTGCGATTGGGTTGACGACTGGGTCGGCTGGGACTGCTGCTCGGCCACC
TGTGACTTGAGCATGTCGTCCACCTTTTTGGCCTCCAGGCGCAGCTTCTC
CTCGCGCAGTTTTTCCCGCTCAGCGGCACGCTGCTCCTTGCGCTGCTTCT
CCGCCAGCCGTAGTCGCTCTTTCTCGGCCACCTTGCGCTCGATCTCGACG
CGGTACTTGTCCAGAATGCCGGCCTCCGCCTCCTCGCTCATTCCCAGCGA
GGAGCCGGGAATGTCATCCTTGCTGCGCAGTGCCAGAATGTAGTCATCCA

BS05246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7727-PA 2664 Appl-RA 1784..2664 897..17 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RF 5425 CG7727-RF 1993..2873 897..17 4405 100 Minus
Appl-RE 6324 CG7727-RE 1978..2858 897..17 4405 100 Minus
Appl-RD 5425 CG7727-RD 1993..2873 897..17 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 574437..574878 897..456 2210 100 Minus
X 23542271 X 575167..575350 308..125 920 100 Minus
X 23542271 X 574940..575089 457..308 750 100 Minus
X 23542271 X 575466..575578 129..17 565 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:15:46 has no hits.

BS05246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:45 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-PA 1782..2664 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:29 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7727-PA 1782..2664 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:55:17 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RD 2022..2906 13..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:34 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RD 1991..2875 13..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:34 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
X 575471..575580 13..124 98   Minus
X 574435..574878 456..899 99 -> Minus
X 574942..575089 308..455 100 -> Minus
X 575168..575350 125..307 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:55:17 Download gff for BS05246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 468468..468911 456..899 99 -> Minus
arm_X 468975..469122 308..455 100 -> Minus
arm_X 469201..469383 125..307 100 -> Minus
arm_X 469504..469613 13..124 98   Minus

BS05246.5prime Sequence

876 bp (849 high quality bases) assembled on 2005-12-02

> BS05246.5prime
GAAGTTATCAGTCGACATGTGCGCCGCGCTGCGTCGTAATTTGTTGCTGA
GGAGCCTCTGGGTCGTCCTGGCCATTGGCACTGCTCAGGTTCAGGCCGCA
TCGCCGCGATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAAT
CTACCAGCCGCAGTATCTTTCCGAGGAGGGACGCTGGGTGACGGACCTTA
GCAAGAAGACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTT
GATTACTGCAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGA
GTCGTCCCACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGA
ATGCGGCTAAGTGCAAGGGATCCCACCGATGGATCAAGCCATTCCGCTGT
CTCGGACCATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTT
CGACCACATCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACC
AAACCGGAGCAGCCGCTTGCCAGGAGCGCGGAATGCAGATGCGCAGCTTC
GCCATGCTTCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGT
CTGCTGTCCCAAGCACTTCAAAACCGATGAAATTCATGTAAAGAAGACCG
ACTTGCCGGTGATGCCGGCAGCTCAGATCAATAGCGCCAATGACGAGCTG
GTGATGAATGACGAAGACGACAGCAACGACTCGAACTACTCGAAGGATGC
CAATGAAGACGATCTGGACGATGAGGATGATTTGATGGGTGATGATGAGG
AGGACGATATGGTGGCGGATGAGGCAGCTACCGCAGGCGGAAGCCCCCAC
ACCGGGTTCTCAGGTGACTCAAATAG

BS05246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7727-PA 2664 Appl-RA 1..860 17..876 4225 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RE 6324 CG7727-RE 207..1066 17..876 4255 99.7 Plus
Appl-RB 6331 CG7727-RB 193..1052 17..876 4255 99.7 Plus
Appl-RA 5422 CG7727-RA 207..1066 17..876 4255 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 571427..571679 624..876 1220 98.8 Plus
X 23542271 X 571133..571352 404..623 1100 100 Plus
X 23542271 X 560601..560777 90..266 885 100 Plus
X 23542271 X 570860..571001 264..405 710 100 Plus
X 23542271 X 531799..531877 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:32:21 has no hits.

BS05246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:46 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:31 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7727-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:39:12 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 228..1097 10..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:48 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 197..1066 10..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:48 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
X 571427..571679 624..876 98   Plus
X 531789..531876 10..94 96 -> Plus
X 560606..560776 95..265 100 -> Plus
X 570862..571000 266..404 100 -> Plus
X 571134..571352 405..623 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:39:12 Download gff for BS05246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 425822..425909 10..94 96 -> Plus
arm_X 454639..454809 95..265 100 -> Plus
arm_X 464895..465033 266..404 100 -> Plus
arm_X 465167..465385 405..623 100 -> Plus
arm_X 465460..465712 624..876 98   Plus

BS05246.pep Sequence

Translation from 16 to 2679

> BS05246.pep
MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQIYQPQY
LSEEGRWVTDLSKKTTGPTCLRDKMDLLDYCKKAYPNRDITNIVESSHYQ
KIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHN
ASRCWPFVRWNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKH
FKTDEIHVKKTDLPVMPAAQINSANDELVMNDEDDSNDSNYSKDANEDDL
DDEDDLMGDDEEDDMVADEAATAGGSPNTGSSGDSNSGSLDDINAEYDSG
EEGDNYEEDGAGSESEAEVEASWDQSGGAKVVSLKSDSSSPSSAPVAPAP
EKAPVKSESVTSTPQLSASAAAFVAANSGNSGTGAGAPPSTAQPTSDPYF
THFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPK
AAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREA
MTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPG
GLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILA
LRSKDDIPGSSLGMSEEAEAGILDKYRVEIERKVAEKERLRLAEKQRKEQ
RAAEREKLREEKLRLEAKKVDDMLKSQVAEQQSQPTQSSTQSQAQQQQQE
KSLPGKELGPDAALVTAANPNLETTKSEKDLSDTEYGEATVSSTKVQTVL
PTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRESSFSLRREFA
QHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEV
DQNVTTHHPIVREEKIVPNMQINGYENPTYKYFEVKE*

BS05246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-PA 887 CG7727-PA 1..887 1..887 4608 100 Plus
Appl-PF 888 CG7727-PF 1..888 1..887 4583 99.5 Plus
Appl-PB 890 CG7727-PB 1..890 1..887 4577 99.4 Plus
Appl-PE 883 CG7727-PE 1..883 1..887 4575 99.5 Plus
Appl-PD 888 CG7727-PD 1..888 1..887 4548 99 Plus