Clone BS05248 Report

Search the DGRC for BS05248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptGstE12-RA
Protein status:BS05248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05248.3prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-02

> BS05248.3prime
ATGGTCTAGAAAGCTTCTACTTGCCACGGTTTTCTGCCAGCTTGGCCTTG
AAGATGCTCTTAAGCTCGTCAGCGCCGTCGCCGTTTACCTCCTGGTAGTA
GGGTAGCTCTGCCAGACGCTTCAGCCAGGCGTGCATCTTGGGAAACTTAA
ATTCATCGATGGGAGCGGTGTCGTTCACCGAGGTTACGGTGGCCACGGCG
CAAAAGTCTGCGATGGTTAGATCAGAACCACACAAATACGGCTGATCCTT
GAGGAATCCCTCTAGGATCTCCCAGCACTTCTGGATGTATGCGATCTTGT
CGATGGAGCAGTCCGTCGATCCATAATACAGGATGGGCTCGTAAAGGAAG
CGCAGGCGCGCGAAGAGGTGGCCGGAGTCCAGATGGAGCCGAGCATCCAC
GTTGGCGCGCTGCACCAATTCCTTCGGATAGAGCTGCTGCTCCTTCTGGC
CATACTTCTCCACCAGGTAGGCGCAGATGGCGTGCGAGTCAATGATAGTG
GCCTCGCCGTCGATCAGGGTCGGGATGGTGTGCTGGGGGTTCAGCTTGAG
GAATTCCGGAGTCAGATGCTCTCCCTTCAGCAGGTTAATTGGCCGTAGTT
CAAGGTCGAGTCCGATCGCCTTAGCCGTGAGGAGGACGGCGCGCGATGGG
GGACTTAGGGTGGCATAATACAGAGCTGGCTTTGACATGTCGACTGATAA
CT

BS05248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16936-PA 672 CG16936-RA 1..672 688..17 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1214 689..17 3365 100 Minus
GstE12-RB 1022 CG16936-RB 227..899 689..17 3365 100 Minus
GstE12-RD 907 CG16936-RD 138..810 689..17 3365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766841..24767418 17..594 2890 100 Plus
2R 25286936 2R 24767474..24767570 593..689 485 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:12:17 has no hits.

BS05248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:47 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:32 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:50:25 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 13..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:57:39 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 13..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:57:39 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24766839..24767417 13..593 99 <- Plus
2R 24767475..24767575 594..693 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:50:25 Download gff for BS05248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654362..20654940 13..593 99 <- Plus
arm_2R 20654998..20655098 594..693 98   Plus

BS05248.5prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-02

> BS05248.5prime
GAAGTTATCAGTCGACATGTCAAAGCCAGCTCTGTATTATGCCACCCTAA
GTCCCCCATCGCGCGCCGTCCTCCTCACGGCTAAGGCGATCGGACTCGAC
CTTGAACTACGGCCAATTAACCTGCTGAAGGGAGAGCATCTGACTCCGGA
ATTCCTCAAGCTGAACCCCCAGCACACCATCCCGACCCTGATCGACGGCG
AGGCCACTATCATTGACTCGCACGCCATCTGCGCCTACCTGGTGGAGAAG
TATGGCCAGAAGGAGCAGCAGCTCTATCCGAAGGAATTGGTGCAGCGCGC
CAACGTGGATGCTCGGCTCCATCTGGACTCCGGCCACCTCTTCGCGCGCC
TGCGCTTCCTTTACGAGCCCATCCTGTATTATGGATCGACGGACTGCTCC
ATCGACAAGATCGCATACATCCAGAAGTGCTGGGAGATCCTAGAGGGATT
CCTCAAGGATCAGCCGTATTTGTGTGGTTCTGATCTAACCATCGCAGACT
TTTGCGCCGTGGCCACCGTAACCTCGGTGAACGACACCGCTCCCATCGAT
GAATTTAAGTTTCCCAAGATGCACGCCTGGCTGAAGCGTCTGGCAGAGCT
ACCCTACTACCAGGAGGTAAACGGCGACGGCGCTGACGAGCTTAAGAGCA
TCTTCAAGGCCAAGCTGGCAGAAAACCGTGGCAAGTAGAAGCTTTCTAGA
CC

BS05248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16936-PA 672 CG16936-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1214 16..688 3365 100 Plus
GstE12-RB 1022 CG16936-RB 227..899 16..688 3365 100 Plus
GstE12-RD 907 CG16936-RD 138..810 16..688 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766841..24767418 688..111 2890 100 Minus
2R 25286936 2R 24767474..24767570 112..16 485 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:08:24 has no hits.

BS05248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:48 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:33 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:15:19 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 12..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:19:26 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 12..692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:19:26 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24766839..24767417 112..692 99 <- Minus
2R 24767475..24767575 12..111 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:15:19 Download gff for BS05248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654362..20654940 112..692 99 <- Minus
arm_2R 20654998..20655098 12..111 98   Minus

BS05248.complete Sequence

704 bp (704 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635084

> BS05248.complete
GAAGTTATCAGTCGACATGTCAAAGCCAGCTCTGTATTATGCCACCCTAA
GTCCCCCATCGCGCGCCGTCCTCCTCACGGCTAAGGCGATCGGACTCGAC
CTTGAACTACGGCCAATTAACCTGCTGAAGGGAGAGCATCTGACTCCGGA
ATTCCTCAAGCTGAACCCCCAGCACACCATCCCGACCCTGATCGACGGCG
AGGCCACTATCATTGACTCGCACGCCATCTGCGCCTACCTGGTGGAGAAG
TATGGCCAGAAGGAGCAGCAGCTCTATCCGAAGGAATTGGTGCAGCGCGC
CAACGTGGATGCTCGGCTCCATCTGGACTCCGGCCACCTCTTCGCGCGCC
TGCGCTTCCTTTACGAGCCCATCCTGTATTATGGATCGACGGACTGCTCC
ATCGACAAGATCGCATACATCCAGAAGTGCTGGGAGATCCTAGAGGGATT
CCTCAAGGATCAGCCGTATTTGTGTGGTTCTGATCTAACCATCGCAGACT
TTTGCGCCGTGGCCACCGTAACCTCGGTGAACGACACCGCTCCCATCGAT
GAATTTAAGTTTCCCAAGATGCACGCCTGGCTGAAGCGTCTGGCAGAGCT
ACCCTACTACCAGGAGGTAAACGGCGACGGCGCTGACGAGCTTAAGAGCA
TCTTCAAGGCCAAGCTGGCAGAAAACCGTGGCAAGTAGAAGCTTTCTAGA
CCAT

BS05248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 672 CG16936-PC 1..672 17..688 3360 100 Plus
GstE12-RB 672 CG16936-PB 1..672 17..688 3360 100 Plus
GstE12-RD 672 CG16936-PD 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1214 16..688 3365 100 Plus
GstE12-RB 1022 CG16936-RB 227..899 16..688 3365 100 Plus
GstE12-RD 907 CG16936-RD 138..810 16..688 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766841..24767418 688..111 2890 100 Minus
2R 25286936 2R 24767474..24767570 112..16 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:54:28 has no hits.

BS05248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:59 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:46 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 54..737 7..692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:40 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 139..810 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:59 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 54..737 7..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:03 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 139..810 17..688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:03 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24766841..24767417 112..688 100 <- Minus
2R 24767475..24767569 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:40 Download gff for BS05248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654364..20654940 112..688 100 <- Minus
arm_2R 20654998..20655092 17..111 100   Minus

BS05248.pep Sequence

Translation from 16 to 687

> BS05248.pep
MSKPALYYATLSPPSRAVLLTAKAIGLDLELRPINLLKGEHLTPEFLKLN
PQHTIPTLIDGEATIIDSHAICAYLVEKYGQKEQQLYPKELVQRANVDAR
LHLDSGHLFARLRFLYEPILYYGSTDCSIDKIAYIQKCWEILEGFLKDQP
YLCGSDLTIADFCAVATVTSVNDTAPIDEFKFPKMHAWLKRLAELPYYQE
VNGDGADELKSIFKAKLAENRGK*

BS05248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-PC 223 CG16936-PC 1..223 1..223 1169 100 Plus
GstE12-PB 223 CG16936-PB 1..223 1..223 1169 100 Plus
GstE12-PD 223 CG16936-PD 1..223 1..223 1169 100 Plus
GstE12-PA 223 CG16936-PA 1..223 1..223 1169 100 Plus
GstE11-PB 225 CG5224-PB 3..225 2..223 566 49.3 Plus