Clone Sequence Records
BS05250.3prime Sequence
934 bp (834 high quality bases) assembled on 2005-12-02
> BS05250.3prime
ATGGTCTAGAAAGCTTTTACCAAACGAGCCCTTCATTTTGCATATTCTGC
GGTTCGCTGAAATTCGCCGAGCTCATGAACTCCGGCGAATTGGTGCGGGG
GCCATTTTGTTGCTGCTGCTGCTGCGTCTGATTCGCCGCTTGTTGCGCAT
TCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGC
GCCGCCTGTTGCTGCGCCGCTGCCGCTGCGGCGGCCATCAAGTGCTCGGC
GCTCGGCGGCGGCGGCGGTGGCGGCGGTCCGACGGCCGACTGCAGTTGCA
TTGGCGGACCGCCCGCCTGCCCAAGGAACGTCGCCTCCGGCGTCAGTCCG
AACTCGTTCACCATCGGAATGGGTCCGCTGTGGTCCATGGGGCCACCTGG
CGCATTGAAGGGCATCGGTCCGCCGGGATGTCCGGGAAAGTAGGGTCCGT
CGTGCGGGTGAAAGGGTCCGCCGTAGCCGAACTCGAACTTGGCGTCCGCC
GCGAAGTAGGGAAAGCCGGGTCCGTCGTCCAGTCCGCCGGGCGAGAGGTT
CATGGGGAAGCCCCTCATTTTCCGGGCGCCACCGAAAAAGGGCGGGCGGC
CCATGCTGGTGATTTGTTTCATGCGTCGCTCCTTCGACCGTTTATTCTGG
AACCACACCTGTATGACTCGCATGGGCAGCCCGGTCTCCTTGGCCAGTTG
CTCCCTGATGTGGCGTGTCGGCTTCGGCGTCTGATTGAAGGCCGTCTTGA
GCACCTCCAGCTGTTTGGCCTTGATGGTGGTGCGCGGACCGCGTCGCTTC
GATCCGTTGGCATCGTCGGGACTTTTGTTCTCCGCCTGGGAATCGCCACG
TCCATCCGGATCGCCGTCCAAGGAGCCCTGATCGGAATCGTCATGGGTAT
TTTTGCTATCGGTGCTCATGCTTTGTACTGATAT
BS05250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11354-PA | 1518 | Lim1-RA | 601..1518 | 934..17 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RB | 2708 | CG11354-RB | 305..1222 | 934..17 | 4590 | 100 | Minus |
Lim1-RA | 3081 | CG11354-RA | 1399..2316 | 934..17 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8758025..8758406 | 17..398 | 1910 | 100 | Plus |
X | 23542271 | X | 8758692..8758959 | 394..661 | 1340 | 100 | Plus |
X | 23542271 | X | 8768053..8768278 | 656..881 | 1130 | 100 | Plus |
X | 23542271 | X | 8768751..8768808 | 877..934 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:25:37 has no hits.
BS05250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:51 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-PA | 601..1518 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:37 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11354-PA | 601..1518 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:34:02 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 1399..2316 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:05 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 1399..2316 | 17..934 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:05 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8758025..8758404 | 17..396 | 100 | <- | Plus |
X | 8758695..8758956 | 397..658 | 100 | <- | Plus |
X | 8768056..8768274 | 659..877 | 100 | <- | Plus |
X | 8768752..8768808 | 878..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:34:02 Download gff for
BS05250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8652058..8652437 | 17..396 | 100 | <- | Plus |
arm_X | 8652728..8652989 | 397..658 | 100 | <- | Plus |
arm_X | 8662089..8662307 | 659..877 | 100 | <- | Plus |
arm_X | 8662785..8662841 | 878..934 | 100 | | Plus |
BS05250.5prime Sequence
939 bp (810 high quality bases) assembled on 2005-12-02
> BS05250.5prime
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGC
TCAAGACGGCCTTNCATCAGACGCCGAAGCCGACACGCCACATCAGGGAG
CAACTGGCCAAGGAGACCGGGCTGCCCATGCGAGTCATACAGGTGTGGTT
CCAGAATAAAACGTCGAAAGAACGACGCATGAAACAAAT
BS05250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11354-PA | 1518 | Lim1-RA | 1..923 | 17..939 | 4471 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RA | 3081 | CG11354-RA | 799..1721 | 17..939 | 4529 | 99.3 | Plus |
Lim1-RB | 2708 | CG11354-RB | 170..627 | 482..939 | 2204 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8787610..8787839 | 482..253 | 1150 | 100 | Minus |
X | 23542271 | X | 8768053..8768278 | 895..670 | 1104 | 99.1 | Minus |
X | 23542271 | X | 8788734..8788930 | 255..59 | 985 | 100 | Minus |
X | 23542271 | X | 8768751..8768943 | 674..482 | 965 | 100 | Minus |
X | 23542271 | X | 8804962..8805006 | 61..17 | 225 | 100 | Minus |
X | 23542271 | X | 8758910..8758959 | 939..890 | 190 | 92 | Minus |
Blast to na_te.dros performed 2015-02-09 23:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 240..325 | 502..590 | 122 | 62.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 11418..11503 | 502..590 | 122 | 62.9 | Plus |
BS05250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:52 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:39 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11354-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:37 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 793..1721 | 9..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:16 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 793..1721 | 9..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:16 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8788734..8788929 | 60..255 | 100 | <- | Minus |
X | 8804964..8805012 | 9..59 | 92 | | Minus |
X | 8758910..8758956 | 893..939 | 91 | <- | Minus |
X | 8768056..8768274 | 674..892 | 99 | <- | Minus |
X | 8768752..8768942 | 483..673 | 100 | <- | Minus |
X | 8787610..8787836 | 256..482 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:37 Download gff for
BS05250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8662785..8662975 | 483..673 | 100 | <- | Minus |
arm_X | 8652943..8652989 | 893..939 | 91 | <- | Minus |
arm_X | 8662089..8662307 | 674..892 | 99 | <- | Minus |
arm_X | 8681643..8681869 | 256..482 | 100 | <- | Minus |
arm_X | 8682767..8682962 | 60..255 | 100 | <- | Minus |
arm_X | 8698997..8699045 | 9..59 | 92 | | Minus |
BS05250.complete Sequence
1550 bp (1550 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635085
> BS05250.complete
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGC
TCAAGACGGCCTTCAATCAGACGCCGAAGCCGACACGCCACATCAGGGAG
CAACTGGCCAAGGAGACCGGGCTGCCCATGCGAGTCATACAGGTGTGGTT
CCAGAATAAACGGTCGAAGGAGCGACGCATGAAACAAATCACCAGCATGG
GCCGCCCGCCCTTTTTCGGTGGCGCCCGGAAAATGAGGGGCTTCCCCATG
AACCTCTCGCCCGGCGGACTGGACGACGGACCCGGCTTTCCCTACTTCGC
GGCGGACGCCAAGTTCGAGTTCGGCTACGGCGGACCCTTTCACCCGCACG
ACGGACCCTACTTTCCCGGACATCCCGGCGGACCGATGCCCTTCAATGCG
CCAGGTGGCCCCATGGACCACAGCGGACCCATTCCGATGGTGAACGAGTT
CGGACTGACGCCGGAGGCGACGTTCCTTGGGCAGGCGGGCGGTCCGCCAA
TGCAACTGCAGTCGGCCGTCGGACCGCCGCCACCGCCGCCGCCGCCGAGC
GCCGAGCACTTGATGGCCGCCGCAGCGGCAGCGGCGCAGCAACAGGCGGC
GCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGA
ATGCGCAACAAGCGGCGAATCAGACGCAGCAGCAGCAGCAACAAAATGGC
CCCCGCACCAATTCGCCGGAGTTCATGAGCTCGGCGAATTTCAGCGAACC
GCAGAATATGCAAAATGAAGGGCTCGTTTGGTAAAAGCTTTCTAGACCAT
BS05250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RA | 1518 | CG11354-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Lim1-RB | 1044 | CG11354-PB | 1..1044 | 491..1534 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-RA | 3081 | CG11354-RA | 799..2316 | 17..1534 | 7590 | 100 | Plus |
Lim1-RB | 2708 | CG11354-RB | 170..1222 | 482..1534 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8758025..8758406 | 1534..1153 | 1910 | 100 | Minus |
X | 23542271 | X | 8758692..8758959 | 1157..890 | 1340 | 100 | Minus |
X | 23542271 | X | 8787610..8787839 | 482..253 | 1150 | 100 | Minus |
X | 23542271 | X | 8768053..8768278 | 895..670 | 1130 | 100 | Minus |
X | 23542271 | X | 8788734..8788930 | 255..59 | 985 | 100 | Minus |
X | 23542271 | X | 8768751..8768943 | 674..482 | 965 | 100 | Minus |
X | 23542271 | X | 8804962..8805006 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 240..325 | 502..590 | 122 | 62.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 11418..11503 | 502..590 | 122 | 62.9 | Plus |
BS05250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:02 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 1..1518 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:48 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 770..2285 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:38 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 799..2314 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:02 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 764..2287 | 9..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:50 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lim1-RA | 799..2314 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:50 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8788734..8788929 | 60..255 | 100 | <- | Minus |
X | 8804964..8805006 | 17..59 | 100 | | Minus |
X | 8768752..8768942 | 483..673 | 100 | <- | Minus |
X | 8787610..8787836 | 256..482 | 100 | <- | Minus |
X | 8758027..8758404 | 1155..1532 | 100 | <- | Minus |
X | 8758695..8758956 | 893..1154 | 100 | <- | Minus |
X | 8768056..8768274 | 674..892 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:38 Download gff for
BS05250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8682767..8682962 | 60..255 | 100 | <- | Minus |
arm_X | 8698997..8699039 | 17..59 | 100 | | Minus |
arm_X | 8662785..8662975 | 483..673 | 100 | <- | Minus |
arm_X | 8681643..8681869 | 256..482 | 100 | <- | Minus |
arm_X | 8652060..8652437 | 1155..1532 | 100 | <- | Minus |
arm_X | 8652728..8652989 | 893..1154 | 100 | <- | Minus |
arm_X | 8662089..8662307 | 674..892 | 100 | <- | Minus |
BS05250.pep Sequence
Translation from 16 to 1533
> BS05250.pep
MAFGAVLHTSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLERAWHAS
CVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVR
KPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCG
HNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSD
ISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGP
RTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRS
KERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF
EFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPE
ATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQ
QQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSEPQNMQN
EGLVW*
BS05250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lim1-PA | 505 | CG11354-PA | 1..505 | 1..505 | 2759 | 100 | Plus |
Lim1-PB | 347 | CG11354-PB | 1..347 | 159..505 | 1871 | 100 | Plus |
Lim3-PE | 405 | CG10699-PE | 7..126 | 27..146 | 405 | 53.3 | Plus |
Lim3-PA | 440 | CG10699-PA | 42..161 | 27..146 | 405 | 53.3 | Plus |
tup-PB | 465 | CG10619-PB | 54..337 | 27..339 | 404 | 30.2 | Plus |
Lim3-PE | 405 | CG10699-PE | 6..221 | 85..332 | 260 | 30.9 | Plus |
Lim3-PA | 440 | CG10699-PA | 41..256 | 85..332 | 260 | 30.9 | Plus |