Clone BS05250 Report

Search the DGRC for BS05250

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptLim1-RA
Protein status:BS05250.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05250.3prime Sequence

934 bp (834 high quality bases) assembled on 2005-12-02

> BS05250.3prime
ATGGTCTAGAAAGCTTTTACCAAACGAGCCCTTCATTTTGCATATTCTGC
GGTTCGCTGAAATTCGCCGAGCTCATGAACTCCGGCGAATTGGTGCGGGG
GCCATTTTGTTGCTGCTGCTGCTGCGTCTGATTCGCCGCTTGTTGCGCAT
TCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGC
GCCGCCTGTTGCTGCGCCGCTGCCGCTGCGGCGGCCATCAAGTGCTCGGC
GCTCGGCGGCGGCGGCGGTGGCGGCGGTCCGACGGCCGACTGCAGTTGCA
TTGGCGGACCGCCCGCCTGCCCAAGGAACGTCGCCTCCGGCGTCAGTCCG
AACTCGTTCACCATCGGAATGGGTCCGCTGTGGTCCATGGGGCCACCTGG
CGCATTGAAGGGCATCGGTCCGCCGGGATGTCCGGGAAAGTAGGGTCCGT
CGTGCGGGTGAAAGGGTCCGCCGTAGCCGAACTCGAACTTGGCGTCCGCC
GCGAAGTAGGGAAAGCCGGGTCCGTCGTCCAGTCCGCCGGGCGAGAGGTT
CATGGGGAAGCCCCTCATTTTCCGGGCGCCACCGAAAAAGGGCGGGCGGC
CCATGCTGGTGATTTGTTTCATGCGTCGCTCCTTCGACCGTTTATTCTGG
AACCACACCTGTATGACTCGCATGGGCAGCCCGGTCTCCTTGGCCAGTTG
CTCCCTGATGTGGCGTGTCGGCTTCGGCGTCTGATTGAAGGCCGTCTTGA
GCACCTCCAGCTGTTTGGCCTTGATGGTGGTGCGCGGACCGCGTCGCTTC
GATCCGTTGGCATCGTCGGGACTTTTGTTCTCCGCCTGGGAATCGCCACG
TCCATCCGGATCGCCGTCCAAGGAGCCCTGATCGGAATCGTCATGGGTAT
TTTTGCTATCGGTGCTCATGCTTTGTACTGATAT

BS05250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 601..1518 934..17 4590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RB 2708 CG11354-RB 305..1222 934..17 4590 100 Minus
Lim1-RA 3081 CG11354-RA 1399..2316 934..17 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8758025..8758406 17..398 1910 100 Plus
X 23542271 X 8758692..8758959 394..661 1340 100 Plus
X 23542271 X 8768053..8768278 656..881 1130 100 Plus
X 23542271 X 8768751..8768808 877..934 290 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:25:37 has no hits.

BS05250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:51 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-PA 601..1518 17..934 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:37 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 601..1518 17..934 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:34:02 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1399..2316 17..934 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:05 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1399..2316 17..934 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:05 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8758025..8758404 17..396 100 <- Plus
X 8758695..8758956 397..658 100 <- Plus
X 8768056..8768274 659..877 100 <- Plus
X 8768752..8768808 878..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:34:02 Download gff for BS05250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8652058..8652437 17..396 100 <- Plus
arm_X 8652728..8652989 397..658 100 <- Plus
arm_X 8662089..8662307 659..877 100 <- Plus
arm_X 8662785..8662841 878..934 100   Plus

BS05250.5prime Sequence

939 bp (810 high quality bases) assembled on 2005-12-02

> BS05250.5prime
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGC
TCAAGACGGCCTTNCATCAGACGCCGAAGCCGACACGCCACATCAGGGAG
CAACTGGCCAAGGAGACCGGGCTGCCCATGCGAGTCATACAGGTGTGGTT
CCAGAATAAAACGTCGAAAGAACGACGCATGAAACAAAT

BS05250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 1..923 17..939 4471 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 3081 CG11354-RA 799..1721 17..939 4529 99.3 Plus
Lim1-RB 2708 CG11354-RB 170..627 482..939 2204 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8787610..8787839 482..253 1150 100 Minus
X 23542271 X 8768053..8768278 895..670 1104 99.1 Minus
X 23542271 X 8788734..8788930 255..59 985 100 Minus
X 23542271 X 8768751..8768943 674..482 965 100 Minus
X 23542271 X 8804962..8805006 61..17 225 100 Minus
X 23542271 X 8758910..8758959 939..890 190 92 Minus
Blast to na_te.dros performed 2015-02-09 23:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 240..325 502..590 122 62.9 Plus
TART-A 13424 TART-A 13424bp 11418..11503 502..590 122 62.9 Plus

BS05250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:52 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:39 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:37 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1721 9..939 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:16 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1721 9..939 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:16 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8788734..8788929 60..255 100 <- Minus
X 8804964..8805012 9..59 92   Minus
X 8758910..8758956 893..939 91 <- Minus
X 8768056..8768274 674..892 99 <- Minus
X 8768752..8768942 483..673 100 <- Minus
X 8787610..8787836 256..482 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:37 Download gff for BS05250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8662785..8662975 483..673 100 <- Minus
arm_X 8652943..8652989 893..939 91 <- Minus
arm_X 8662089..8662307 674..892 99 <- Minus
arm_X 8681643..8681869 256..482 100 <- Minus
arm_X 8682767..8682962 60..255 100 <- Minus
arm_X 8698997..8699045 9..59 92   Minus

BS05250.complete Sequence

1550 bp (1550 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635085

> BS05250.complete
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGC
TCAAGACGGCCTTCAATCAGACGCCGAAGCCGACACGCCACATCAGGGAG
CAACTGGCCAAGGAGACCGGGCTGCCCATGCGAGTCATACAGGTGTGGTT
CCAGAATAAACGGTCGAAGGAGCGACGCATGAAACAAATCACCAGCATGG
GCCGCCCGCCCTTTTTCGGTGGCGCCCGGAAAATGAGGGGCTTCCCCATG
AACCTCTCGCCCGGCGGACTGGACGACGGACCCGGCTTTCCCTACTTCGC
GGCGGACGCCAAGTTCGAGTTCGGCTACGGCGGACCCTTTCACCCGCACG
ACGGACCCTACTTTCCCGGACATCCCGGCGGACCGATGCCCTTCAATGCG
CCAGGTGGCCCCATGGACCACAGCGGACCCATTCCGATGGTGAACGAGTT
CGGACTGACGCCGGAGGCGACGTTCCTTGGGCAGGCGGGCGGTCCGCCAA
TGCAACTGCAGTCGGCCGTCGGACCGCCGCCACCGCCGCCGCCGCCGAGC
GCCGAGCACTTGATGGCCGCCGCAGCGGCAGCGGCGCAGCAACAGGCGGC
GCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGA
ATGCGCAACAAGCGGCGAATCAGACGCAGCAGCAGCAGCAACAAAATGGC
CCCCGCACCAATTCGCCGGAGTTCATGAGCTCGGCGAATTTCAGCGAACC
GCAGAATATGCAAAATGAAGGGCTCGTTTGGTAAAAGCTTTCTAGACCAT

BS05250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 1518 CG11354-PA 1..1518 17..1534 7590 100 Plus
Lim1-RB 1044 CG11354-PB 1..1044 491..1534 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 3081 CG11354-RA 799..2316 17..1534 7590 100 Plus
Lim1-RB 2708 CG11354-RB 170..1222 482..1534 5265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8758025..8758406 1534..1153 1910 100 Minus
X 23542271 X 8758692..8758959 1157..890 1340 100 Minus
X 23542271 X 8787610..8787839 482..253 1150 100 Minus
X 23542271 X 8768053..8768278 895..670 1130 100 Minus
X 23542271 X 8788734..8788930 255..59 985 100 Minus
X 23542271 X 8768751..8768943 674..482 965 100 Minus
X 23542271 X 8804962..8805006 61..17 225 100 Minus
Blast to na_te.dros performed 2014-11-28 05:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 240..325 502..590 122 62.9 Plus
TART-A 13424 TART-A 13424bp 11418..11503 502..590 122 62.9 Plus

BS05250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:02 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1..1518 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:48 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 770..2285 17..1532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:38 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 799..2314 17..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:02 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 764..2287 9..1534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:50 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 799..2314 17..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:50 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
X 8788734..8788929 60..255 100 <- Minus
X 8804964..8805006 17..59 100   Minus
X 8768752..8768942 483..673 100 <- Minus
X 8787610..8787836 256..482 100 <- Minus
X 8758027..8758404 1155..1532 100 <- Minus
X 8758695..8758956 893..1154 100 <- Minus
X 8768056..8768274 674..892 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:38 Download gff for BS05250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8682767..8682962 60..255 100 <- Minus
arm_X 8698997..8699039 17..59 100   Minus
arm_X 8662785..8662975 483..673 100 <- Minus
arm_X 8681643..8681869 256..482 100 <- Minus
arm_X 8652060..8652437 1155..1532 100 <- Minus
arm_X 8652728..8652989 893..1154 100 <- Minus
arm_X 8662089..8662307 674..892 100 <- Minus

BS05250.pep Sequence

Translation from 16 to 1533

> BS05250.pep
MAFGAVLHTSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLERAWHAS
CVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVR
KPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCG
HNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSD
ISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGP
RTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRS
KERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF
EFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPE
ATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQ
QQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSEPQNMQN
EGLVW*

BS05250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-PA 505 CG11354-PA 1..505 1..505 2759 100 Plus
Lim1-PB 347 CG11354-PB 1..347 159..505 1871 100 Plus
Lim3-PE 405 CG10699-PE 7..126 27..146 405 53.3 Plus
Lim3-PA 440 CG10699-PA 42..161 27..146 405 53.3 Plus
tup-PB 465 CG10619-PB 54..337 27..339 404 30.2 Plus
Lim3-PE 405 CG10699-PE 6..221 85..332 260 30.9 Plus
Lim3-PA 440 CG10699-PA 41..256 85..332 260 30.9 Plus