Clone BS05252 Report

Search the DGRC for BS05252

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG7028-RA
Protein status:BS05252.pep: full length peptide match
Sequenced Size:2756

Clone Sequence Records

BS05252.complete Sequence

2756 bp assembled on 2009-12-07

GenBank Submission: KX798378

> BS05252.complete
GAAGTTATCAGTCGACATGGCTGACGACAAAAGCTACGACTCCAGCAACA
ACAGCGAGACCGAAGAGCGTCGGGCCAAGCACAAAAAGGCTAAAAAGCAC
AAAAAACATAAAAAATCCTCGACTGGCAAGACCGAGAAGGACAGGCATGT
CCACAAGAAGCAGAAGAAGGCAAAAAAGCGCCCCCACCGAACAAGCGAAT
CCACAAACGAATCGGACGCCCCGGAAAACGCAAAGTTAAAGCTATCACAA
AATTGCGGGCTGAGCAGCAAGTTCACAGAAATCATGCAGAAGGCCAGCCG
GAATGGAGCCGATTTCCGTGTCGGCAAACCCCTGCTTCCGACGGATCCGA
GCAGCCTTGTTGAAGAAATCACCAAAACTATTCAGAATAAGATGCTGCCT
GTCCTGGAGGTGGCCAGTTCAAGCAGCGAAAGCGATGTGCCCGCCGATGC
CGCCAGTCCTATTATTTTGTCTATTATTGAAGACGAGCTTAATTTGGAGG
AATTGATGCGGCAGAAGGCCCTTCTGCAGGCGCGCCTGGGCGCCTATATG
TCGGATCCCGAGGCTGAGGATAAGGGCGATCTCCTCCCACACACACACTC
GCAGCAGCTGGTTGTCCACACCAAATCAGTGCTCAAAGCTGTCACATCCG
TACCGCAGCCCCAACCCAGCAAGTCTGCAGCGCCGTTGGCTACTGCAACC
AGTAAACATGCTAATATTAAAAAGTCTACCACGCATAACTCAAATGAATC
CGATGTTATATTGTTGGATGATTCTAGCGGAGGCCAGCGAACCCCCTCGC
CTACACCCGAGAAACGAAGGCGCCACGCATCCCCGCTCCCAGCGGCTCCG
AGAAGCCGTTGCCGTAGGGATCGTCGTTCGAGGGATCGCGACCGTTCACC
CCCACGTCGGCGAGCATCAGATCAGCAGACCCAGGTTCGCCCGCGGAGCC
GCAACCGCAACATGGAGGACCTACGACAGGAAATAAATCGCGACAAGCAA
AGGGAAAGACGGGACCATAGTCGAGACCGGGATCGGCGAGGATTGGATAG
GCCGCCGCCACCCACTGATATGAGACCAGGTCGTGCACGGGAGCGAGACG
TTCGGCCGAGTCGTATGCAGCGGTCGCACAGCCGCAGTAAGTTTGAATCA
GACAGGCGACGAGAGCGGGAGCGGCAAAAGGACCGGGATCGTGGTGGCGG
GCGCGTAGGAGCTCGCAGCGGGACAGACAACGGGGATAGAGATCGGTACA
AGGGTTCGCTGAGCGAGGGGCAAAATAAGCTCGACAAGGAGAGCAGTGAT
GAGGAGGTGAACGTAAACATTGACATTTTGGAGGAAGATGACGAAGAACG
TATCATTGAGCTACGTAGAAAGAAGCGCGAGGAGCTACTCAAGAAGCTGG
GCACTGGGCAAGAATCGCCAGCGCCTCATAACTCGGTCTCGTACGAGTCT
CGGAGTACCTCACAAGGGTCATCCCAACGCGAAAGACCTTTAAGAACGCC
GTCGCCCACGATGCCGTGCCCGAATCCACTTATCTCGGAAATTCCAAAGG
ATCGCGAAGATATGGATAACTCGACTAGCCAAAAGACTTGCTCCGCGAAG
GAAAAACGAAACGAGTGGGATATGTTCGCTGACCAAGACGTGGACTCTAA
TTTCGATTCACCCAACACAATCGTCCAAAATAAGCATCAACACGAAAATC
CCGCTCTCACAGACAATTGGGACGACGCTGAAGGTTATTACCGAGTTCGT
ATCGGTGAAGTTTTGGACAATCGCTACCTAGTGAATGGATACACAGGCCA
GGGTGTCTTCAGCAACGTAGTGCGTGGCAGAGACCAAGCTCGTGGGCAAG
CTAATGTAGCCATTAAGATCATACGGAACAACGAAATAATGCACAAAACT
GGCTTGCGGGAACTAGAAATATTAAAAAAGCTGAACGATGCCGATCCAGA
GGATCGTTTCCACTGCCTGCGACTGTATCGTCACTTCTTTCACAAGCAGC
ATCTTTGTATGGTGTTTGAGCCATTAGCAATGAATTTGCGGGAAGTACTT
AAAAAGTATGGCAAGAATGTGGGACTCCACATCAAAGCAGTGCGTAGCTA
CACGCAGCAGCTATTCTTAGCGCTCAAATTGTTAAAAAAGACGGGCATTT
TGCATGCTGACATTAAGCCGGATAACATTTTGGTAAACGAAAATAATCTG
ATACTAAAATTGTGTGATTTTGGTTCTGCTTCGGCAATCAGCGACAACGA
AATAACACCGTACTTGGTATCGCGGTTCTACCGTTCGCCTGAGATAATTT
TGGGTATTCCCTATGACTACGGAATCGACACCTGGTCTGCGGGCTGCACA
ATTTATGAGTTATACACGGGAAAGATTCTGTTTAGCGGGAAAAGTAACAA
TCAGATGCTTAAGTTTTTCATGGACGTAAAAGGCAAGATACCAAACCGAA
TTATCAGAAAAGGTCAGTTTAGAGAGCAGCATTTTGACCAAAGCTGCAAC
TTTCTCTACCATGAAATAGATAAGCTCACTGAGAGGGAAAAAATTGTTGT
AATGCCTGTAGTCAAACCTTCGCGTAGCCTGCAGCAGGAACTAATTGCTG
ACCAGAACTTACCCGACGATCAACATCGCAAGGTCACCCAGCTCAAGGAT
CTTCTAGAGAACATGTTTGCCTTAGATCCGGCTAAACGGATCTCCCTTAA
CCAGGCACTAGTTCATCCATTCATACAGGAGAAGATGTAAAAGCTTTCTA
GACCAT

BS05252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-RE 2724 CG7028-PE 1..2724 17..2740 13620 100 Plus
CG7028-RA 2724 CG7028-PA 1..2724 17..2740 13620 100 Plus
CG7028-RD 2721 CG7028-PD 1..2721 17..2740 13540 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-RE 2990 CG7028-RE 150..2874 17..2741 13625 100 Plus
CG7028-RA 3100 CG7028-RA 150..2874 17..2741 13625 100 Plus
CG7028-RD 3097 CG7028-RD 150..2871 17..2741 13545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 209784..210738 1393..439 4775 100 Minus
3L 28110227 3L 208371..208910 2537..1998 2700 100 Minus
3L 28110227 3L 210814..211221 439..32 2040 100 Minus
3L 28110227 3L 209450..209715 1657..1392 1330 100 Minus
3L 28110227 3L 209141..209374 1891..1658 1170 100 Minus
3L 28110227 3L 208113..208318 2741..2536 1030 100 Minus
3L 28110227 3L 208971..209079 1999..1891 545 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:31:35 has no hits.

BS05252.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:02 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 155..2876 17..2738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:07 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 150..2871 17..2738 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:15 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 155..2876 17..2738 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:15 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 150..2871 17..2738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:15 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
3L 210815..211219 34..438 100 <- Minus
3L 211292..211308 17..33 100   Minus
3L 208116..208317 2537..2738 100 <- Minus
3L 208372..208908 2000..2536 100 <- Minus
3L 208971..209079 1891..1999 100 <- Minus
3L 209142..209374 1658..1890 100 <- Minus
3L 209450..209713 1394..1657 100 <- Minus
3L 209784..210738 439..1393 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:07 Download gff for BS05252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 210815..211219 34..438 100 <- Minus
arm_3L 208116..208317 2537..2738 100 <- Minus
arm_3L 208372..208908 2000..2536 100 <- Minus
arm_3L 208971..209079 1891..1999 100 <- Minus
arm_3L 209142..209374 1658..1890 100 <- Minus
arm_3L 209450..209713 1394..1657 100 <- Minus
arm_3L 209784..210738 439..1393 100 <- Minus
arm_3L 211292..211308 17..33 100   Minus

BS05252.3prime Sequence

926 bp (737 high quality bases) assembled on 2005-12-02

> BS05252.3prime
ATGGTCTAGAAAGCTTTTACATCTTCTCCTGTATGAATGGATGAACTAGT
GCCTGGTTAAGGGAGATCCGTTTAGCCGGATCTAAGGCAAACATGTTCTC
TAGAAGATCCTTGAGCTGGGTGACCTTGCGATGTTGATCGTCGGGTAAGT
TCTGGTCAGCAATTAGTTCCTGCTGCAGGCTACGCGAAGGTTTGACTACA
GGCATTACAACAATTTTTTCCCTCTCAGTGAGCTTATCTATTTCATGGTA
GAGAAAGTTGCAGCTTTGGTCAAAATGCTGCTCTCTAAACTGACCTTTTC
TGATAATTCGGTTTGGTATCTTGCCTTTTACGTCCATGAAAAACTTAAGC
ATCTGATTGTTACTTTTCCCGCTAAACAGAATCTTTCCCGTGTATAACTC
ATAAATTGTGCAGCCCGCAGACCAGGTGTCGATTCCGTAGTCATAGGGAA
TACCCAAAATTATCTCAGGCGAACGGTAGAACCGCGATACCAAGTACGGT
GTTATTTCGTTGTCGCTGATTGCCGAAGCAGAACCAAAATCACACAATTT
TAGTATCAGATTATTTTCGTTTACCAAAATGTTATCCGGCTTAATGTCAG
CATGCAAAATGCCCGTCTTTTTTAACAATTTGAGCGCTAAGAATAGCTGC
TGCGTGTAGCTACGCACTGCTTTGATGTGGAGTCCCACATTCTTGCCATA
CTTTTTAAGTACTTCCCGCAAATTCATTGCTAATGGCTCAAACACCATAC
AAAGATGCTGCTTGTGAAAGAAGTGACGATACAGTCGCAGGCAGTGGAAA
CGATCCTCTGGATCGGCATCGTTCAGCTTTTTTAATATTTCTAGTTCCCG
CAAGCCAGTTTTGTGCATTATTTCGTTGTTCCGTATGATCTTAATGGCTA
CATTAGCTTGCCCACGAGCTTGGTCT

BS05252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-PA 2724 CG7028-RA 1815..2724 926..17 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-RB 3112 CG7028-RB 1976..2886 926..16 4555 100 Minus
CG7028-RE 2990 CG7028-RE 1964..2874 926..16 4555 100 Minus
CG7028-RD 3097 CG7028-RD 1961..2871 926..16 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 208371..208910 220..759 2700 100 Plus
3L 28110227 3L 208113..208318 16..221 1030 100 Plus
3L 28110227 3L 208971..209079 758..866 545 100 Plus
3L 28110227 3L 209141..209201 866..926 305 100 Plus
Blast to na_te.dros performed 2015-02-12 18:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-element 4789 Doc2-element DOC2 4789bp 2776..2831 130..185 109 66.1 Plus

BS05252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:55 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-PA 1815..2724 17..926 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:43 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-PA 1815..2724 17..926 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:16 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 1964..2874 16..926 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:49 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-RD 1961..2871 16..926 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:49 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 208113..208317 16..220 100 <- Plus
3L 208372..208908 221..757 100 <- Plus
3L 208971..209079 758..866 100 <- Plus
3L 209142..209201 867..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:16 Download gff for BS05252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 208113..208317 16..220 100 <- Plus
arm_3L 208372..208908 221..757 100 <- Plus
arm_3L 208971..209079 758..866 100 <- Plus
arm_3L 209142..209201 867..926 100   Plus

BS05252.5prime Sequence

923 bp (829 high quality bases) assembled on 2005-12-02

> BS05252.5prime
GAAGTTATCAGTCGACATGGCTGACGACAAAAGCTACGACTCCAGCAACA
ACAGCGAGACCGAAGAGCGTCGGGCCAAGCACAAAAAGGCTAAAAAGCAC
AAAAAACATAAAAAATCCTCGACTGGCAAGACCGAGAAGGACAGGCATGT
CCACAAGAAGCAGAAGAAGGCAAAAAAGCGCCCCCACCGAACAAGCGAAT
CCACAAACGAATCGGACGCCCCGGAAAACGCAAAGTTAAAGCTATCACAA
AATTGCGGGCTGAGCAGCAAGTTCACAGAAATCATGCAGAAGGCCAGCCG
GAATGGAGCCGATTTCCGTGTCGGCAAACCCCTGCTTCCGACGGATCCGA
GCAGCCTTGTTGAAGAAATCACCAAAACTATTCAGAATAAGATGCTGCCT
GTCCTGGAGGTGGCCAGTTCAAGCAGCGAAAGCGATGTGCCCGCCGATGC
CGCCAGTCCTATTATTTTGTCTATTATTGAAGACGAGCTTAATTTGGAGG
AATTGATGCGGCAGAAGGCCCTTCTGCAGGCGCGCCTGGGCGCCTATATG
TCGGATCCCGAGGCTGAGGATAAGGGCGATCTCCTCCCACACACACACTC
GCAGCAGCTGGTTGTCCACACCAAATCAGTGCTCAAAGCTGTCACATCCG
TACCGCAGCCCCAACCCAGCAAGTCTGCAGCGCCGTTGGCTACTGCAACC
AGTAAACATGCTAATATTAAAAAGTCTACCACGCATAACTCAAATGAATC
CGATGTTATATTGTTGGATGATTCTAGCGGAGGCCAGCGAACCCCCTCGC
CTACACCCGAGAAACGAAGGCGCCACGCATCCCCGCTCCCAGCGGCTCCG
AGAAGCCGTTGCCGTAGGGATCGTCGTTCGAGGGATCGCGACCGTTCACC
CCCACGTCGGCGAGCATCAGATC

BS05252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-PA 2724 CG7028-RA 1..907 17..923 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-RB 3112 CG7028-RB 150..1056 17..923 4535 100 Plus
CG7028-RE 2990 CG7028-RE 150..1056 17..923 4535 100 Plus
CG7028-RD 3097 CG7028-RD 150..1056 17..923 4535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 210254..210738 923..439 2425 100 Minus
3L 28110227 3L 210814..211221 439..32 2040 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:15:17 has no hits.

BS05252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:56 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:45 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:59 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-RA 150..1056 17..923 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:50 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7028-RD 150..1056 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:50 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 210254..210738 439..923 100 <- Minus
3L 210815..211219 34..438 100 <- Minus
3L 211292..211308 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:59 Download gff for BS05252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 210254..210738 439..923 100 <- Minus
arm_3L 210815..211219 34..438 100 <- Minus
arm_3L 211292..211308 17..33 100   Minus

BS05252.pep Sequence

Translation from 16 to 2739

> BS05252.pep
MADDKSYDSSNNSETEERRAKHKKAKKHKKHKKSSTGKTEKDRHVHKKQK
KAKKRPHRTSESTNESDAPENAKLKLSQNCGLSSKFTEIMQKASRNGADF
RVGKPLLPTDPSSLVEEITKTIQNKMLPVLEVASSSSESDVPADAASPII
LSIIEDELNLEELMRQKALLQARLGAYMSDPEAEDKGDLLPHTHSQQLVV
HTKSVLKAVTSVPQPQPSKSAAPLATATSKHANIKKSTTHNSNESDVILL
DDSSGGQRTPSPTPEKRRRHASPLPAAPRSRCRRDRRSRDRDRSPPRRRA
SDQQTQVRPRSRNRNMEDLRQEINRDKQRERRDHSRDRDRRGLDRPPPPT
DMRPGRARERDVRPSRMQRSHSRSKFESDRRRERERQKDRDRGGGRVGAR
SGTDNGDRDRYKGSLSEGQNKLDKESSDEEVNVNIDILEEDDEERIIELR
RKKREELLKKLGTGQESPAPHNSVSYESRSTSQGSSQRERPLRTPSPTMP
CPNPLISEIPKDREDMDNSTSQKTCSAKEKRNEWDMFADQDVDSNFDSPN
TIVQNKHQHENPALTDNWDDAEGYYRVRIGEVLDNRYLVNGYTGQGVFSN
VVRGRDQARGQANVAIKIIRNNEIMHKTGLRELEILKKLNDADPEDRFHC
LRLYRHFFHKQHLCMVFEPLAMNLREVLKKYGKNVGLHIKAVRSYTQQLF
LALKLLKKTGILHADIKPDNILVNENNLILKLCDFGSASAISDNEITPYL
VSRFYRSPEIILGIPYDYGIDTWSAGCTIYELYTGKILFSGKSNNQMLKF
FMDVKGKIPNRIIRKGQFREQHFDQSCNFLYHEIDKLTEREKIVVMPVVK
PSRSLQQELIADQNLPDDQHRKVTQLKDLLENMFALDPAKRISLNQALVH
PFIQEKM*

BS05252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7028-PE 907 CG7028-PE 1..907 1..907 4704 100 Plus
CG7028-PA 907 CG7028-PA 1..907 1..907 4704 100 Plus
CG7028-PC 912 CG7028-PC 1..912 1..907 4688 99.5 Plus
CG7028-PD 906 CG7028-PD 1..906 1..907 4687 99.9 Plus
CG7028-PB 911 CG7028-PB 1..911 1..907 4671 99.3 Plus