Clone BS05255 Report

Search the DGRC for BS05255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG4928-RA
Protein status:BS05255.pep: full length peptide match
Sequenced Size:1649

Clone Sequence Records

BS05255.5prime Sequence

420 bp (366 high quality bases) assembled on 2005-12-02

> BS05255.5prime
GAAGTTATCAGTCGACATGACTGGTTTCACGAACGCCGGTTTCGAGAACG
ATGAGCCCGTCAAGCCAAAAGCTGGTTTCGAGCCCGATACCGCCTCGCTG
CGAGAGAAAGTTGTGCTGAATCCGGGCGAGAAATGGCGCATCTTAAAGAA
TATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGG
GCACGGCCAATCTGCAATCCTCTATAAACGCAAAGGATGGCCTGGGCACA
GTGTCGCTTAGTGCGATCTACGCCGCCTTGGTGGTCTCCTGCATCTTCCT
GCCCACTCTGATCATTAGGAAACTAACGGTCAAAATGGACATTGGTGTGC
AGCATGCTCTGCTACGCACCATACATCGCATTCCAGCTCCTCCCGCGATT
CTATACGTTGGTGCCCCGCC

BS05255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-PA 1617 CG4928-RA 1..318 17..334 1590 100 Plus
CG4928-PB 1617 CG4928-RB 1..318 17..334 1590 100 Plus
CG4928-PA 1617 CG4928-RA 316..399 333..416 370 97.6 Plus
CG4928-PB 1617 CG4928-RB 316..399 333..416 370 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-RC 1772 CG4928-RC 261..659 17..416 1945 99.2 Plus
CG4928-RB 3410 CG4928-RB 262..660 17..416 1945 99.2 Plus
CG4928-RA 3472 CG4928-RA 1122..1520 17..416 1945 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16934035..16934253 197..416 1020 98.6 Plus
X 23542271 X 16933402..16933539 63..200 690 100 Plus
X 23542271 X 16928695..16928742 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:48:13 has no hits.

BS05255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:00 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-PB 1..402 17..420 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:50 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-PB 1..402 17..420 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:55 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 1115..1523 9..420 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:30 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 1115..1523 9..420 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:30 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16928688..16928742 9..64 94 -> Plus
X 16933404..16933538 65..199 100 -> Plus
X 16934038..16934256 200..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:55 Download gff for BS05255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16822721..16822775 9..64 94 -> Plus
arm_X 16827437..16827571 65..199 100 -> Plus
arm_X 16828071..16828289 200..420 98   Plus

BS05255.3prime Sequence

353 bp (352 high quality bases) assembled on 2005-12-02

> BS05255.3prime
ATGGTCTAGAAAGCTTTTACAGGCGCGTGACCACAATGTCCTCCTCGAGA
TCGTCCAGCTCGTCGTCGGTCTCCTCGACGCCATCTGCTCCTGCCTCGGC
GGCGGCCAAAGCGGCGGCGGCTGCGGCGGCGGCGGCCTCCTTCTCCTTCT
CCGCGGCCTCCAGCTTCTCCTGCTTCTTGAGCTTGCGTTGCTTCTTCCTG
TACAGGATCTCCACAATCACGTAGCCGATGCAGCCGAGCGTGAGTACAGC
CAGCAGAATGTAGAGCTTCATCTGCGTGCAGAGTGTTGTGGCATAGGCGT
AGGCAATAACGAATCCGGCGGACTCCCATAGGCGGTAGTTGGAGAAGGCA
GCC

BS05255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-PA 1617 CG4928-RA 1281..1617 353..17 1685 100 Minus
CG4928-PB 1617 CG4928-RB 1281..1617 353..17 1685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-RB 3410 CG4928-RB 1542..1879 353..16 1690 100 Minus
CG4928-RA 3472 CG4928-RA 2402..2739 353..16 1690 100 Minus
CG4928-RC 1772 CG4928-RC 1541..1703 353..191 815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16936502..16936678 192..16 885 100 Minus
X 23542271 X 16935559..16935721 353..191 815 100 Minus
Blast to na_te.dros performed on 2015-02-04 10:32:04 has no hits.

BS05255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:59 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-PB 1281..1617 17..353 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:49 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-PB 1281..1617 17..353 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:29 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 2402..2744 10..353 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:45 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 2402..2744 10..353 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:45 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16935559..16935721 191..353 100 -> Minus
X 16936504..16936683 10..190 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:29 Download gff for BS05255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16829592..16829754 191..353 100 -> Minus
arm_X 16830537..16830716 10..190 98   Minus

BS05255.complete Sequence

1649 bp assembled on 2010-05-10

GenBank Submission: KX794166

> BS05255.complete
GAAGTTATCAGTCGACATGACTGGTTTCACGAACGCCGGTTTCGAGAACG
ATGAGCCCGTCAAGCCAAAAGCTGGTTTCGAGCCCGATACCGCCTCGCTG
CGAGAGAAAGTTGTGCTGAATCCGGGCGAGAAATGGCGCATCTTAAAGAA
TATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGG
GCACGGCCAATCTGCAATCCTCTATAAACGCAAAGGATGGCCTGGGCACA
GTGTCGCTTAGTGCGATCTACGCCGCCTTGGTGGTCTCCTGCATCTTCCT
GCCCACTCTGATCATTAGGAAACTAACGGTCAAATGGACATTGGTGTGCA
GCATGCTCTGCTACGCACCATACATCGCATTCCAGCTCTTCCCGCGATTC
TATACGTTGGTGCCCGCCGGTATCCTTGTGGGTATGGGCGCCGCACCCAT
GTGGGCGTCCAAGGCCACCTATTTGACGCAGGTTGGACAGGTGTATGCCA
AGATCACGGAACAGGCGGTGGATGCCATTATAGTGCGATTCTTTGGCTTC
TTCTTCCTGGCCTGGCAATCCGCTGAGCTCTGGGGCAATCTCATCTCCAG
TTTGGTCCTCTCCAGCGGCGCTCATGGCGGTGGCAGCAGCTCGAACACGA
CGGTCAGCGAGGAGGATTTGCAGTTCTGCGGTGCCAACTTCTGCACCACC
GGAAGCGGCGGCCATGGCAACCTGGAGCGTCCGCCAGAGGATGAGATCTT
CGAGATCTCGATGATCTATCTGTCCTGCATTGTGGCCGCCGTCTGCATCA
TCGCCTTCTTCTTGGATCCCCTCAAGCGGTATGGTGAGAAGCGCAAGGGC
TCCAATTCTGCCGCCGAGTTGTCCGGACTGCAGCTGCTGTCCGCCACCTT
CCGCCAGATGAAGAAACCGAATCTGCAGCTCCTCATCCCTATCACCGTTT
TCATTGGCATGGAGCAGGCTTTCATCGGTGCCGATTTCACTCAGGCCTAT
GTGGCCTGCGCCCTGGGAGTGAACAAGATTGGCTTCGTCATGATCTGTTT
CGGTGTGGTGAATGCCCTCTGCTCGATCCTCTTCGGATCGGTAATGAAGT
ATATCGGCCGCACGCCCATCATTGTACTGGGCGCCGTCGTCCACTTCACC
CTGATCACCGTTGAGCTCTTCTGGCGCCCCAATCCCGATAATCCCATCAT
CTTCTATGCCATGTCCGGCCTGTGGGGCGTCGGCGATGCCGTGTGGCAGA
CCCAGATCAACGGACTGTACGGACTGCTGTTCCGCAGGAACAAGGAGGCT
GCCTTCTCCAACTACCGCCTATGGGAGTCCGCCGGATTCGTTATTGCCTA
CGCCTATGCCACAACACTCTGCACGCAGATGAAGCTCTACATTCTGCTGG
CTGTACTCACGCTCGGCTGCATCGGCTACGTGATTGTGGAGATCCTGTAC
AGGAAGAAGCAACGCAAGCTCAAGAAGCAGGAGAAGCTGGAGGCCGCGGA
GAAGGAGAAGGAGGCCGCCGCCGCCGCAGCCGCCGCCGCTTTGGCCGCCG
CCGAGGCAGGAGCAGATGGCGTCGAGGAGACCGACGACGAGCTGGACGAT
CTCGAGGAGGACATTGTGGTCACGCGCCTGTAAAAGCTTTCTAGACCAT

BS05255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-RB 1617 CG4928-PB 1..1617 17..1633 8070 99.9 Plus
CG4928-RA 1617 CG4928-PA 1..1617 17..1633 8070 99.9 Plus
CG4928-RC 1488 CG4928-PC 1..1443 17..1459 7200 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-RB 3410 CG4928-RB 262..1879 17..1634 8075 99.9 Plus
CG4928-RA 3472 CG4928-RA 1122..2739 17..1634 8075 99.9 Plus
CG4928-RC 1772 CG4928-RC 261..1703 17..1459 7200 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16934863..16935721 601..1459 4280 99.9 Plus
X 23542271 X 16934035..16934443 197..605 2030 99.8 Plus
X 23542271 X 16936502..16936678 1458..1634 885 100 Plus
X 23542271 X 16933402..16933539 63..200 690 100 Plus
X 23542271 X 16928695..16928742 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:42:06 has no hits.

BS05255.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:59 Download gff for BS05255.complete
Subject Subject Range Query Range Percent Splice Strand
CG4928-RB 240..1854 17..1631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:24 Download gff for BS05255.complete
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 1122..2736 17..1631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:21 Download gff for BS05255.complete
Subject Subject Range Query Range Percent Splice Strand
CG4928-RA 1122..2736 17..1631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:21 Download gff for BS05255.complete
Subject Subject Range Query Range Percent Splice Strand
X 16934038..16934443 200..605 99 -> Plus
X 16928695..16928742 17..64 100 -> Plus
X 16933404..16933538 65..199 100 -> Plus
X 16934868..16935721 606..1459 100 -> Plus
X 16936504..16936675 1460..1631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:24 Download gff for BS05255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16828071..16828476 200..605 99 -> Plus
arm_X 16822728..16822775 17..64 100 -> Plus
arm_X 16827437..16827571 65..199 100 -> Plus
arm_X 16828901..16829754 606..1459 100 -> Plus
arm_X 16830537..16830708 1460..1631 100   Plus

BS05255.pep Sequence

Translation from 16 to 1632

> BS05255.pep
MTGFTNAGFENDEPVKPKAGFEPDTASLREKVVLNPGEKWRILKNISIIS
IAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFLPTLII
RKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKA
TYLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSS
GAHGGGSSSNTTVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMI
YLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQMKK
PNLQLLIPITVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNA
LCSILFGSVMKYIGRTPIIVLGAVVHFTLITVELFWRPNPDNPIIFYAMS
GLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYAYATT
LCTQMKLYILLAVLTLGCIGYVIVEILYRKKQRKLKKQEKLEAAEKEKEA
AAAAAAAALAAAEAGADGVEETDDELDDLEEDIVVTRL*

BS05255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4928-PB 538 CG4928-PB 1..538 1..538 2753 100 Plus
CG4928-PA 538 CG4928-PA 1..538 1..538 2753 100 Plus
CG4928-PC 495 CG4928-PC 1..481 1..481 2486 100 Plus
CG2121-PA 522 CG2121-PA 57..517 36..486 983 41.3 Plus
CG2121-PB 536 CG2121-PB 71..531 36..486 983 41.3 Plus