Clone Sequence Records
BS05255.5prime Sequence
420 bp (366 high quality bases) assembled on 2005-12-02
> BS05255.5prime
GAAGTTATCAGTCGACATGACTGGTTTCACGAACGCCGGTTTCGAGAACG
ATGAGCCCGTCAAGCCAAAAGCTGGTTTCGAGCCCGATACCGCCTCGCTG
CGAGAGAAAGTTGTGCTGAATCCGGGCGAGAAATGGCGCATCTTAAAGAA
TATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGG
GCACGGCCAATCTGCAATCCTCTATAAACGCAAAGGATGGCCTGGGCACA
GTGTCGCTTAGTGCGATCTACGCCGCCTTGGTGGTCTCCTGCATCTTCCT
GCCCACTCTGATCATTAGGAAACTAACGGTCAAAATGGACATTGGTGTGC
AGCATGCTCTGCTACGCACCATACATCGCATTCCAGCTCCTCCCGCGATT
CTATACGTTGGTGCCCCGCC
BS05255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-PA | 1617 | CG4928-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
CG4928-PB | 1617 | CG4928-RB | 1..318 | 17..334 | 1590 | 100 | Plus |
CG4928-PA | 1617 | CG4928-RA | 316..399 | 333..416 | 370 | 97.6 | Plus |
CG4928-PB | 1617 | CG4928-RB | 316..399 | 333..416 | 370 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-RC | 1772 | CG4928-RC | 261..659 | 17..416 | 1945 | 99.2 | Plus |
CG4928-RB | 3410 | CG4928-RB | 262..660 | 17..416 | 1945 | 99.2 | Plus |
CG4928-RA | 3472 | CG4928-RA | 1122..1520 | 17..416 | 1945 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16934035..16934253 | 197..416 | 1020 | 98.6 | Plus |
X | 23542271 | X | 16933402..16933539 | 63..200 | 690 | 100 | Plus |
X | 23542271 | X | 16928695..16928742 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:48:13 has no hits.
BS05255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:00 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-PB | 1..402 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:50 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-PB | 1..402 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:55 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 1115..1523 | 9..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:30 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 1115..1523 | 9..420 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:30 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16928688..16928742 | 9..64 | 94 | -> | Plus |
X | 16933404..16933538 | 65..199 | 100 | -> | Plus |
X | 16934038..16934256 | 200..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:55 Download gff for
BS05255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16822721..16822775 | 9..64 | 94 | -> | Plus |
arm_X | 16827437..16827571 | 65..199 | 100 | -> | Plus |
arm_X | 16828071..16828289 | 200..420 | 98 | | Plus |
BS05255.3prime Sequence
353 bp (352 high quality bases) assembled on 2005-12-02
> BS05255.3prime
ATGGTCTAGAAAGCTTTTACAGGCGCGTGACCACAATGTCCTCCTCGAGA
TCGTCCAGCTCGTCGTCGGTCTCCTCGACGCCATCTGCTCCTGCCTCGGC
GGCGGCCAAAGCGGCGGCGGCTGCGGCGGCGGCGGCCTCCTTCTCCTTCT
CCGCGGCCTCCAGCTTCTCCTGCTTCTTGAGCTTGCGTTGCTTCTTCCTG
TACAGGATCTCCACAATCACGTAGCCGATGCAGCCGAGCGTGAGTACAGC
CAGCAGAATGTAGAGCTTCATCTGCGTGCAGAGTGTTGTGGCATAGGCGT
AGGCAATAACGAATCCGGCGGACTCCCATAGGCGGTAGTTGGAGAAGGCA
GCC
BS05255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-PA | 1617 | CG4928-RA | 1281..1617 | 353..17 | 1685 | 100 | Minus |
CG4928-PB | 1617 | CG4928-RB | 1281..1617 | 353..17 | 1685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-RB | 3410 | CG4928-RB | 1542..1879 | 353..16 | 1690 | 100 | Minus |
CG4928-RA | 3472 | CG4928-RA | 2402..2739 | 353..16 | 1690 | 100 | Minus |
CG4928-RC | 1772 | CG4928-RC | 1541..1703 | 353..191 | 815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16936502..16936678 | 192..16 | 885 | 100 | Minus |
X | 23542271 | X | 16935559..16935721 | 353..191 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:32:04 has no hits.
BS05255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:05:59 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-PB | 1281..1617 | 17..353 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:49 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-PB | 1281..1617 | 17..353 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:29 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 2402..2744 | 10..353 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:45 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 2402..2744 | 10..353 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:45 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16935559..16935721 | 191..353 | 100 | -> | Minus |
X | 16936504..16936683 | 10..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:29 Download gff for
BS05255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16829592..16829754 | 191..353 | 100 | -> | Minus |
arm_X | 16830537..16830716 | 10..190 | 98 | | Minus |
BS05255.complete Sequence
1649 bp assembled on 2010-05-10
GenBank Submission: KX794166
> BS05255.complete
GAAGTTATCAGTCGACATGACTGGTTTCACGAACGCCGGTTTCGAGAACG
ATGAGCCCGTCAAGCCAAAAGCTGGTTTCGAGCCCGATACCGCCTCGCTG
CGAGAGAAAGTTGTGCTGAATCCGGGCGAGAAATGGCGCATCTTAAAGAA
TATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGG
GCACGGCCAATCTGCAATCCTCTATAAACGCAAAGGATGGCCTGGGCACA
GTGTCGCTTAGTGCGATCTACGCCGCCTTGGTGGTCTCCTGCATCTTCCT
GCCCACTCTGATCATTAGGAAACTAACGGTCAAATGGACATTGGTGTGCA
GCATGCTCTGCTACGCACCATACATCGCATTCCAGCTCTTCCCGCGATTC
TATACGTTGGTGCCCGCCGGTATCCTTGTGGGTATGGGCGCCGCACCCAT
GTGGGCGTCCAAGGCCACCTATTTGACGCAGGTTGGACAGGTGTATGCCA
AGATCACGGAACAGGCGGTGGATGCCATTATAGTGCGATTCTTTGGCTTC
TTCTTCCTGGCCTGGCAATCCGCTGAGCTCTGGGGCAATCTCATCTCCAG
TTTGGTCCTCTCCAGCGGCGCTCATGGCGGTGGCAGCAGCTCGAACACGA
CGGTCAGCGAGGAGGATTTGCAGTTCTGCGGTGCCAACTTCTGCACCACC
GGAAGCGGCGGCCATGGCAACCTGGAGCGTCCGCCAGAGGATGAGATCTT
CGAGATCTCGATGATCTATCTGTCCTGCATTGTGGCCGCCGTCTGCATCA
TCGCCTTCTTCTTGGATCCCCTCAAGCGGTATGGTGAGAAGCGCAAGGGC
TCCAATTCTGCCGCCGAGTTGTCCGGACTGCAGCTGCTGTCCGCCACCTT
CCGCCAGATGAAGAAACCGAATCTGCAGCTCCTCATCCCTATCACCGTTT
TCATTGGCATGGAGCAGGCTTTCATCGGTGCCGATTTCACTCAGGCCTAT
GTGGCCTGCGCCCTGGGAGTGAACAAGATTGGCTTCGTCATGATCTGTTT
CGGTGTGGTGAATGCCCTCTGCTCGATCCTCTTCGGATCGGTAATGAAGT
ATATCGGCCGCACGCCCATCATTGTACTGGGCGCCGTCGTCCACTTCACC
CTGATCACCGTTGAGCTCTTCTGGCGCCCCAATCCCGATAATCCCATCAT
CTTCTATGCCATGTCCGGCCTGTGGGGCGTCGGCGATGCCGTGTGGCAGA
CCCAGATCAACGGACTGTACGGACTGCTGTTCCGCAGGAACAAGGAGGCT
GCCTTCTCCAACTACCGCCTATGGGAGTCCGCCGGATTCGTTATTGCCTA
CGCCTATGCCACAACACTCTGCACGCAGATGAAGCTCTACATTCTGCTGG
CTGTACTCACGCTCGGCTGCATCGGCTACGTGATTGTGGAGATCCTGTAC
AGGAAGAAGCAACGCAAGCTCAAGAAGCAGGAGAAGCTGGAGGCCGCGGA
GAAGGAGAAGGAGGCCGCCGCCGCCGCAGCCGCCGCCGCTTTGGCCGCCG
CCGAGGCAGGAGCAGATGGCGTCGAGGAGACCGACGACGAGCTGGACGAT
CTCGAGGAGGACATTGTGGTCACGCGCCTGTAAAAGCTTTCTAGACCAT
BS05255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-RB | 1617 | CG4928-PB | 1..1617 | 17..1633 | 8070 | 99.9 | Plus |
CG4928-RA | 1617 | CG4928-PA | 1..1617 | 17..1633 | 8070 | 99.9 | Plus |
CG4928-RC | 1488 | CG4928-PC | 1..1443 | 17..1459 | 7200 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-RB | 3410 | CG4928-RB | 262..1879 | 17..1634 | 8075 | 99.9 | Plus |
CG4928-RA | 3472 | CG4928-RA | 1122..2739 | 17..1634 | 8075 | 99.9 | Plus |
CG4928-RC | 1772 | CG4928-RC | 261..1703 | 17..1459 | 7200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16934863..16935721 | 601..1459 | 4280 | 99.9 | Plus |
X | 23542271 | X | 16934035..16934443 | 197..605 | 2030 | 99.8 | Plus |
X | 23542271 | X | 16936502..16936678 | 1458..1634 | 885 | 100 | Plus |
X | 23542271 | X | 16933402..16933539 | 63..200 | 690 | 100 | Plus |
X | 23542271 | X | 16928695..16928742 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:42:06 has no hits.
BS05255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:59 Download gff for
BS05255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RB | 240..1854 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:24 Download gff for
BS05255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 1122..2736 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:21 Download gff for
BS05255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4928-RA | 1122..2736 | 17..1631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:21 Download gff for
BS05255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16934038..16934443 | 200..605 | 99 | -> | Plus |
X | 16928695..16928742 | 17..64 | 100 | -> | Plus |
X | 16933404..16933538 | 65..199 | 100 | -> | Plus |
X | 16934868..16935721 | 606..1459 | 100 | -> | Plus |
X | 16936504..16936675 | 1460..1631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:24 Download gff for
BS05255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16828071..16828476 | 200..605 | 99 | -> | Plus |
arm_X | 16822728..16822775 | 17..64 | 100 | -> | Plus |
arm_X | 16827437..16827571 | 65..199 | 100 | -> | Plus |
arm_X | 16828901..16829754 | 606..1459 | 100 | -> | Plus |
arm_X | 16830537..16830708 | 1460..1631 | 100 | | Plus |
BS05255.pep Sequence
Translation from 16 to 1632
> BS05255.pep
MTGFTNAGFENDEPVKPKAGFEPDTASLREKVVLNPGEKWRILKNISIIS
IAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFLPTLII
RKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKA
TYLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSS
GAHGGGSSSNTTVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMI
YLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQMKK
PNLQLLIPITVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNA
LCSILFGSVMKYIGRTPIIVLGAVVHFTLITVELFWRPNPDNPIIFYAMS
GLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYAYATT
LCTQMKLYILLAVLTLGCIGYVIVEILYRKKQRKLKKQEKLEAAEKEKEA
AAAAAAAALAAAEAGADGVEETDDELDDLEEDIVVTRL*
BS05255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4928-PB | 538 | CG4928-PB | 1..538 | 1..538 | 2753 | 100 | Plus |
CG4928-PA | 538 | CG4928-PA | 1..538 | 1..538 | 2753 | 100 | Plus |
CG4928-PC | 495 | CG4928-PC | 1..481 | 1..481 | 2486 | 100 | Plus |
CG2121-PA | 522 | CG2121-PA | 57..517 | 36..486 | 983 | 41.3 | Plus |
CG2121-PB | 536 | CG2121-PB | 71..531 | 36..486 | 983 | 41.3 | Plus |