Clone BS05257 Report

Search the DGRC for BS05257

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG2061-RA
Protein status:BS05257.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05257.3prime Sequence

905 bp (811 high quality bases) assembled on 2005-12-02

> BS05257.3prime
ATGGTCTAGAAAGCTTTTAGTGAAAGACATCCATGAACGGAAAGTAGGCC
TGCTCCGGCTCGAGCAGATCCACGAGGTAGCAAACGGTGCCGGCCACACC
CTCGTACAAGCTATGCGGACGATCCGGTGTGCGGGCGCGCAGCTTGAACT
CGGCATTGGTTAGCAGCTCCATAAACTTGTGCGCCCTGTACAGGTACCTC
ATCTCGTTGGTCAGGCGGAACAGGAGCAGGAAGACATAGCCATTGCCGGC
GACGCCATGGCAGATGCCCGGTCCCTTGCGCAGGAAGCCCTTCTTCCACA
CCATATCCGCACAGCGACGCAGCGAGGCCAAGTACTTCTCCTCCTTGAAG
ATCAGATAGGCCTTGGCCAGCACATAAACGGCGCCGGGTGCCCCATGGCA
CCAGTGCACCAGACGCTTATCCCTGCCGGAGCGCAGATCCTCCAGGGCCA
CCGGAAAGTTGCCATCGCTGTCCTGCAGCTCCAGAAAGAAGTCAATCGAG
CGCTTGATGTCGCGCAACTCGGCGGCCGGCGCCGAAATGGGAAGCGTGCG
GAACCACGGGCTGTCCAACAGCATGTGCAGAATGGCGCACAGGCCATGGG
CCGCACCCAGGTACTCCGTGCCATGGTATTGGTACATTAGCGGACACGGC
GAGTTGTTCTGCTTGCTGTACTCGCGGCCGCTGGTCACGATTAGCTGGCA
TATGGATACCAGGTCATCGTCGGTGATCTTCTTCTCCGGCAGTACATCGT
TTAGCCAATAGCAACCGGATAGATAGCCGGCACGTCCAACCAGCACCTCA
TCGCAGCCGTATTTGGTGTGCATGAACTCCTTGCTGCACGGGGATGCCCG
ACTTGAAGTTGGCCAAGTCGTCGGAAAGCTCCTCGGTCTCCTTTGAGCGC
CTGCG

BS05257.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-PA 1260 CG2061-RA 435..1260 842..17 4130 100 Minus
CG2061-PC 1260 CG2061-RC 435..1260 842..17 4130 100 Minus
CG2061-PB 1260 CG2061-RB 435..1260 842..17 4130 100 Minus
CG2061-PA 1260 CG2061-RA 385..437 893..841 265 100 Minus
CG2061-PC 1260 CG2061-RC 385..437 893..841 265 100 Minus
CG2061-PB 1260 CG2061-RB 385..437 893..841 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-RD 2182 CG2061-RD 653..1540 905..16 4400 99.8 Minus
CG2061-RB 2052 CG2061-RB 810..1697 905..16 4400 99.8 Minus
CG2061-RA 1990 CG2061-RA 748..1635 905..16 4400 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11093418..11094305 905..16 4350 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 04:11:14 has no hits.

BS05257.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:03 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-PA 374..1260 17..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:55 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-PB 374..1260 17..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:12 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 748..1635 16..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:16 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 748..1635 16..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:16 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11093418..11094305 16..905 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:12 Download gff for BS05257.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10987451..10988338 16..905 99   Minus

BS05257.5prime Sequence

972 bp (840 high quality bases) assembled on 2005-12-02

> BS05257.5prime
GAAGTTATCAGTCGACATGGAACGCCGCTACCTGAAGAATCCCTTTCCCG
ATTTCGCCGGCGGGGAGAATACACCTTTCGCCAGCGACGAGGAGCACATC
AAAAATCTGATTTGCACCTATGTGGACGCCATACTGGAGCACTGTCATCC
GAACAGCGATGATGAGGACAATCGCGGTGATCTGTATGTGGGCAATGCCG
GCATAGCCTTCATGTTCTGGAAGCTCAACAGCTGCGAGCAGACACGCGAT
CTCTATCCGGCACTGGATCACGCGGCCTCCTTCATCCGCAATGCCAAGGT
GAATGCCAATCGGTACAAGAAGCGCTCCGCCGAGCGCTACTCCTTTCTGT
GCGGCAATGCTGGTATCTATGCCGTCTCGGCAGCCATATCGCAGGCGCTC
AAGGAGACCGAGGAGCTTTCCGACGACTTGGCCAACTTCAAGTCGGGCAT
CCCGTGCAGCAAGGAGTTCATGCACACCAAATACGGCTGCGATGAGGTGC
TGGTTGGACGTGCCGGCTATCTATCCGGTTGCTATTGGCTAAACGATGTA
CTGCCGGAGAAGAAGATCACCGACGATGACCTGGTATCCATATGCCAGCT
AATCGTGACCAGCGGCCGCGAGTACAGCAAGCAGAACAACTCGCCGTGTC
CGCTAATGTACCAATACCATGGCACGGAGTACCTGGGTGCGGCCCATGGC
CTGTGCGCCATTCTGCACATGCTGTTGGACAGCCCGTGGTTCCGCACGCT
TCCCATTTCGGCGCCGGCCGCCGAGTTGCGCGACATCAAGCGCTCGATTG
ACTTCTTTCTGGAGCTGCAGGACAGCGATGGCAACTTTCCGGTGGCCCTG
GAGGATCTGCGCTCCGGCAGGGATAAGCGTCTGGTGCACTGGTGCCATGG
GGCACCCGGCGCCGTTTATGTGCTGGCCAAGGCCTATCTGATCTTCAAGG
AGGAAAAAGTACTTGGCCTCGC

BS05257.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-PA 1260 CG2061-RA 1..938 17..954 4690 100 Plus
CG2061-PC 1260 CG2061-RC 1..938 17..954 4690 100 Plus
CG2061-PB 1260 CG2061-RB 1..938 17..954 4690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-RD 2182 CG2061-RD 279..1234 16..972 4745 99.8 Plus
CG2061-RB 2052 CG2061-RB 436..1391 16..972 4745 99.8 Plus
CG2061-RA 1990 CG2061-RA 374..1329 16..972 4745 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11093044..11093999 16..972 4720 99.8 Plus
Blast to na_te.dros performed on 2015-02-02 12:07:36 has no hits.

BS05257.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:04 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-PA 1..955 17..972 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:56 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-PB 1..955 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:45:53 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 374..1329 16..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:52:50 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 374..1329 16..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:52:50 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11093044..11093999 16..972 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:45:53 Download gff for BS05257.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10987077..10988032 16..972 99   Plus

BS05257.complete Sequence

1292 bp (1292 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635087

> BS05257.complete
GAAGTTATCAGTCGACATGGAACGCCGCTACCTGAAGAATCCCTTTCCCG
ATTTCGCCGGCGGGGAGAATACACCTTTCGCCAGCGACGAGGAGCACATC
AAAAATCTGATTTGCACCTATGTGGACGCCATACTGGAGCACTGTCATCC
GAACAGCGATGATGAGGACAATCGCGGTGATCTGTATGTGGGCAATGCCG
GCATAGCCTTCATGTTCTGGAAGCTCAACAGCTGCGAGCAGACACGCGAT
CTCTATCCGGCACTGGATCACGCGGCCTCCTTCATCCGCAATGCCAAGGT
GAATGCCAATCGGTACAAGAAGCGCTCCGCCGAGCGCTACTCCTTTCTGT
GCGGCAATGCTGGTATCTATGCCGTCTCGGCAGCCATATCGCAGGCGCTC
AAGGAGACCGAGGAGCTTTCCGACGACTTGGCCAACTTCAAGTCGGGCAT
CCCGTGCAGCAAGGAGTTCATGCACACCAAATACGGCTGCGATGAGGTGC
TGGTTGGACGTGCCGGCTATCTATCCGGTTGCTATTGGCTAAACGATGTA
CTGCCGGAGAAGAAGATCACCGACGATGACCTGGTATCCATATGCCAGCT
AATCGTGACCAGCGGCCGCGAGTACAGCAAGCAGAACAACTCGCCGTGTC
CGCTAATGTACCAATACCATGGCACGGAGTACCTGGGTGCGGCCCATGGC
CTGTGCGCCATTCTGCACATGCTGTTGGACAGCCCGTGGTTCCGCACGCT
TCCCATTTCGGCGCCGGCCGCCGAGTTGCGCGACATCAAGCGCTCGATTG
ACTTCTTTCTGGAGCTGCAGGACAGCGATGGCAACTTTCCGGTGGCCCTG
GAGGATCTGCGCTCCGGCAGGGATAAGCGTCTGGTGCACTGGTGCCATGG
GGCACCCGGCGCCGTTTATGTGCTGGCCAAGGCCTATCTGATCTTCAAGG
AGGAGAAGTACTTGGCCTCGCTGCGTCGCTGTGCGGATATGGTGTGGAAG
AAGGGCTTCCTGCGCAAGGGACCGGGCATCTGCCATGGCGTCGCCGGCAA
TGGCTATGTCTTCCTGCTCCTGTTCCGCCTGACCAACGAGATGAGGTACC
TGTACAGGGCGCACAAGTTTATGGAGCTGCTAACCAATGCCGAGTTCAAG
CTGCGCGCCCGCACACCGGATCGTCCGCATAGCTTGTACGAGGGTGTGGC
CGGCACCGTTTGCTACCTCGTGGATCTGCTCGAGCCGGAGCAGGCCTACT
TTCCGTTCATGGATGTCTTTCACTAAAAGCTTTCTAGACCAT

BS05257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-RD 1260 CG2061-PD 1..1260 17..1276 6300 100 Plus
CG2061-RB 1260 CG2061-PB 1..1260 17..1276 6300 100 Plus
CG2061-RA 1260 CG2061-PA 1..1260 17..1276 6300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-RD 2182 CG2061-RD 279..1540 16..1277 6310 100 Plus
CG2061-RB 2052 CG2061-RB 436..1697 16..1277 6310 100 Plus
CG2061-RA 1990 CG2061-RA 374..1635 16..1277 6310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11093044..11094305 16..1277 6310 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:18:37 has no hits.

BS05257.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:46 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
CG2061-RB 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:49 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
CG2061-RB 199..1460 16..1277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:08 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 375..1632 17..1274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:46 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
CG2061-RB 199..1460 16..1277 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:43 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
CG2061-RA 375..1632 17..1274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:43 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
X 11093045..11094302 17..1274 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:08 Download gff for BS05257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10987078..10988335 17..1274 100   Plus

BS05257.pep Sequence

Translation from 16 to 1275

> BS05257.pep
MERRYLKNPFPDFAGGENTPFASDEEHIKNLICTYVDAILEHCHPNSDDE
DNRGDLYVGNAGIAFMFWKLNSCEQTRDLYPALDHAASFIRNAKVNANRY
KKRSAERYSFLCGNAGIYAVSAAISQALKETEELSDDLANFKSGIPCSKE
FMHTKYGCDEVLVGRAGYLSGCYWLNDVLPEKKITDDDLVSICQLIVTSG
REYSKQNNSPCPLMYQYHGTEYLGAAHGLCAILHMLLDSPWFRTLPISAP
AAELRDIKRSIDFFLELQDSDGNFPVALEDLRSGRDKRLVHWCHGAPGAV
YVLAKAYLIFKEEKYLASLRRCADMVWKKGFLRKGPGICHGVAGNGYVFL
LLFRLTNEMRYLYRAHKFMELLTNAEFKLRARTPDRPHSLYEGVAGTVCY
LVDLLEPEQAYFPFMDVFH*

BS05257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2061-PD 419 CG2061-PD 1..419 1..419 2259 100 Plus
CG2061-PB 419 CG2061-PB 1..419 1..419 2259 100 Plus
CG2061-PA 419 CG2061-PA 1..419 1..419 2259 100 Plus