Clone Sequence Records
BS05257.3prime Sequence
905 bp (811 high quality bases) assembled on 2005-12-02
> BS05257.3prime
ATGGTCTAGAAAGCTTTTAGTGAAAGACATCCATGAACGGAAAGTAGGCC
TGCTCCGGCTCGAGCAGATCCACGAGGTAGCAAACGGTGCCGGCCACACC
CTCGTACAAGCTATGCGGACGATCCGGTGTGCGGGCGCGCAGCTTGAACT
CGGCATTGGTTAGCAGCTCCATAAACTTGTGCGCCCTGTACAGGTACCTC
ATCTCGTTGGTCAGGCGGAACAGGAGCAGGAAGACATAGCCATTGCCGGC
GACGCCATGGCAGATGCCCGGTCCCTTGCGCAGGAAGCCCTTCTTCCACA
CCATATCCGCACAGCGACGCAGCGAGGCCAAGTACTTCTCCTCCTTGAAG
ATCAGATAGGCCTTGGCCAGCACATAAACGGCGCCGGGTGCCCCATGGCA
CCAGTGCACCAGACGCTTATCCCTGCCGGAGCGCAGATCCTCCAGGGCCA
CCGGAAAGTTGCCATCGCTGTCCTGCAGCTCCAGAAAGAAGTCAATCGAG
CGCTTGATGTCGCGCAACTCGGCGGCCGGCGCCGAAATGGGAAGCGTGCG
GAACCACGGGCTGTCCAACAGCATGTGCAGAATGGCGCACAGGCCATGGG
CCGCACCCAGGTACTCCGTGCCATGGTATTGGTACATTAGCGGACACGGC
GAGTTGTTCTGCTTGCTGTACTCGCGGCCGCTGGTCACGATTAGCTGGCA
TATGGATACCAGGTCATCGTCGGTGATCTTCTTCTCCGGCAGTACATCGT
TTAGCCAATAGCAACCGGATAGATAGCCGGCACGTCCAACCAGCACCTCA
TCGCAGCCGTATTTGGTGTGCATGAACTCCTTGCTGCACGGGGATGCCCG
ACTTGAAGTTGGCCAAGTCGTCGGAAAGCTCCTCGGTCTCCTTTGAGCGC
CTGCG
BS05257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-PA | 1260 | CG2061-RA | 435..1260 | 842..17 | 4130 | 100 | Minus |
CG2061-PC | 1260 | CG2061-RC | 435..1260 | 842..17 | 4130 | 100 | Minus |
CG2061-PB | 1260 | CG2061-RB | 435..1260 | 842..17 | 4130 | 100 | Minus |
CG2061-PA | 1260 | CG2061-RA | 385..437 | 893..841 | 265 | 100 | Minus |
CG2061-PC | 1260 | CG2061-RC | 385..437 | 893..841 | 265 | 100 | Minus |
CG2061-PB | 1260 | CG2061-RB | 385..437 | 893..841 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-RD | 2182 | CG2061-RD | 653..1540 | 905..16 | 4400 | 99.8 | Minus |
CG2061-RB | 2052 | CG2061-RB | 810..1697 | 905..16 | 4400 | 99.8 | Minus |
CG2061-RA | 1990 | CG2061-RA | 748..1635 | 905..16 | 4400 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11093418..11094305 | 905..16 | 4350 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:11:14 has no hits.
BS05257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:03 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-PA | 374..1260 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:55 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-PB | 374..1260 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:12 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 748..1635 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:16 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 748..1635 | 16..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:16 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11093418..11094305 | 16..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:12 Download gff for
BS05257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10987451..10988338 | 16..905 | 99 | | Minus |
BS05257.5prime Sequence
972 bp (840 high quality bases) assembled on 2005-12-02
> BS05257.5prime
GAAGTTATCAGTCGACATGGAACGCCGCTACCTGAAGAATCCCTTTCCCG
ATTTCGCCGGCGGGGAGAATACACCTTTCGCCAGCGACGAGGAGCACATC
AAAAATCTGATTTGCACCTATGTGGACGCCATACTGGAGCACTGTCATCC
GAACAGCGATGATGAGGACAATCGCGGTGATCTGTATGTGGGCAATGCCG
GCATAGCCTTCATGTTCTGGAAGCTCAACAGCTGCGAGCAGACACGCGAT
CTCTATCCGGCACTGGATCACGCGGCCTCCTTCATCCGCAATGCCAAGGT
GAATGCCAATCGGTACAAGAAGCGCTCCGCCGAGCGCTACTCCTTTCTGT
GCGGCAATGCTGGTATCTATGCCGTCTCGGCAGCCATATCGCAGGCGCTC
AAGGAGACCGAGGAGCTTTCCGACGACTTGGCCAACTTCAAGTCGGGCAT
CCCGTGCAGCAAGGAGTTCATGCACACCAAATACGGCTGCGATGAGGTGC
TGGTTGGACGTGCCGGCTATCTATCCGGTTGCTATTGGCTAAACGATGTA
CTGCCGGAGAAGAAGATCACCGACGATGACCTGGTATCCATATGCCAGCT
AATCGTGACCAGCGGCCGCGAGTACAGCAAGCAGAACAACTCGCCGTGTC
CGCTAATGTACCAATACCATGGCACGGAGTACCTGGGTGCGGCCCATGGC
CTGTGCGCCATTCTGCACATGCTGTTGGACAGCCCGTGGTTCCGCACGCT
TCCCATTTCGGCGCCGGCCGCCGAGTTGCGCGACATCAAGCGCTCGATTG
ACTTCTTTCTGGAGCTGCAGGACAGCGATGGCAACTTTCCGGTGGCCCTG
GAGGATCTGCGCTCCGGCAGGGATAAGCGTCTGGTGCACTGGTGCCATGG
GGCACCCGGCGCCGTTTATGTGCTGGCCAAGGCCTATCTGATCTTCAAGG
AGGAAAAAGTACTTGGCCTCGC
BS05257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-PA | 1260 | CG2061-RA | 1..938 | 17..954 | 4690 | 100 | Plus |
CG2061-PC | 1260 | CG2061-RC | 1..938 | 17..954 | 4690 | 100 | Plus |
CG2061-PB | 1260 | CG2061-RB | 1..938 | 17..954 | 4690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-RD | 2182 | CG2061-RD | 279..1234 | 16..972 | 4745 | 99.8 | Plus |
CG2061-RB | 2052 | CG2061-RB | 436..1391 | 16..972 | 4745 | 99.8 | Plus |
CG2061-RA | 1990 | CG2061-RA | 374..1329 | 16..972 | 4745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11093044..11093999 | 16..972 | 4720 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:07:36 has no hits.
BS05257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:04 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-PA | 1..955 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:56 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-PB | 1..955 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:45:53 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 374..1329 | 16..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:52:50 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 374..1329 | 16..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:52:50 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11093044..11093999 | 16..972 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:45:53 Download gff for
BS05257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10987077..10988032 | 16..972 | 99 | | Plus |
BS05257.complete Sequence
1292 bp (1292 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635087
> BS05257.complete
GAAGTTATCAGTCGACATGGAACGCCGCTACCTGAAGAATCCCTTTCCCG
ATTTCGCCGGCGGGGAGAATACACCTTTCGCCAGCGACGAGGAGCACATC
AAAAATCTGATTTGCACCTATGTGGACGCCATACTGGAGCACTGTCATCC
GAACAGCGATGATGAGGACAATCGCGGTGATCTGTATGTGGGCAATGCCG
GCATAGCCTTCATGTTCTGGAAGCTCAACAGCTGCGAGCAGACACGCGAT
CTCTATCCGGCACTGGATCACGCGGCCTCCTTCATCCGCAATGCCAAGGT
GAATGCCAATCGGTACAAGAAGCGCTCCGCCGAGCGCTACTCCTTTCTGT
GCGGCAATGCTGGTATCTATGCCGTCTCGGCAGCCATATCGCAGGCGCTC
AAGGAGACCGAGGAGCTTTCCGACGACTTGGCCAACTTCAAGTCGGGCAT
CCCGTGCAGCAAGGAGTTCATGCACACCAAATACGGCTGCGATGAGGTGC
TGGTTGGACGTGCCGGCTATCTATCCGGTTGCTATTGGCTAAACGATGTA
CTGCCGGAGAAGAAGATCACCGACGATGACCTGGTATCCATATGCCAGCT
AATCGTGACCAGCGGCCGCGAGTACAGCAAGCAGAACAACTCGCCGTGTC
CGCTAATGTACCAATACCATGGCACGGAGTACCTGGGTGCGGCCCATGGC
CTGTGCGCCATTCTGCACATGCTGTTGGACAGCCCGTGGTTCCGCACGCT
TCCCATTTCGGCGCCGGCCGCCGAGTTGCGCGACATCAAGCGCTCGATTG
ACTTCTTTCTGGAGCTGCAGGACAGCGATGGCAACTTTCCGGTGGCCCTG
GAGGATCTGCGCTCCGGCAGGGATAAGCGTCTGGTGCACTGGTGCCATGG
GGCACCCGGCGCCGTTTATGTGCTGGCCAAGGCCTATCTGATCTTCAAGG
AGGAGAAGTACTTGGCCTCGCTGCGTCGCTGTGCGGATATGGTGTGGAAG
AAGGGCTTCCTGCGCAAGGGACCGGGCATCTGCCATGGCGTCGCCGGCAA
TGGCTATGTCTTCCTGCTCCTGTTCCGCCTGACCAACGAGATGAGGTACC
TGTACAGGGCGCACAAGTTTATGGAGCTGCTAACCAATGCCGAGTTCAAG
CTGCGCGCCCGCACACCGGATCGTCCGCATAGCTTGTACGAGGGTGTGGC
CGGCACCGTTTGCTACCTCGTGGATCTGCTCGAGCCGGAGCAGGCCTACT
TTCCGTTCATGGATGTCTTTCACTAAAAGCTTTCTAGACCAT
BS05257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-RD | 1260 | CG2061-PD | 1..1260 | 17..1276 | 6300 | 100 | Plus |
CG2061-RB | 1260 | CG2061-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
CG2061-RA | 1260 | CG2061-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-RD | 2182 | CG2061-RD | 279..1540 | 16..1277 | 6310 | 100 | Plus |
CG2061-RB | 2052 | CG2061-RB | 436..1697 | 16..1277 | 6310 | 100 | Plus |
CG2061-RA | 1990 | CG2061-RA | 374..1635 | 16..1277 | 6310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11093044..11094305 | 16..1277 | 6310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:37 has no hits.
BS05257.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:46 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RB | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:49 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RB | 199..1460 | 16..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:08 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 375..1632 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:46 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RB | 199..1460 | 16..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:43 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2061-RA | 375..1632 | 17..1274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:43 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11093045..11094302 | 17..1274 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:08 Download gff for
BS05257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10987078..10988335 | 17..1274 | 100 | | Plus |
BS05257.pep Sequence
Translation from 16 to 1275
> BS05257.pep
MERRYLKNPFPDFAGGENTPFASDEEHIKNLICTYVDAILEHCHPNSDDE
DNRGDLYVGNAGIAFMFWKLNSCEQTRDLYPALDHAASFIRNAKVNANRY
KKRSAERYSFLCGNAGIYAVSAAISQALKETEELSDDLANFKSGIPCSKE
FMHTKYGCDEVLVGRAGYLSGCYWLNDVLPEKKITDDDLVSICQLIVTSG
REYSKQNNSPCPLMYQYHGTEYLGAAHGLCAILHMLLDSPWFRTLPISAP
AAELRDIKRSIDFFLELQDSDGNFPVALEDLRSGRDKRLVHWCHGAPGAV
YVLAKAYLIFKEEKYLASLRRCADMVWKKGFLRKGPGICHGVAGNGYVFL
LLFRLTNEMRYLYRAHKFMELLTNAEFKLRARTPDRPHSLYEGVAGTVCY
LVDLLEPEQAYFPFMDVFH*
BS05257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2061-PD | 419 | CG2061-PD | 1..419 | 1..419 | 2259 | 100 | Plus |
CG2061-PB | 419 | CG2061-PB | 1..419 | 1..419 | 2259 | 100 | Plus |
CG2061-PA | 419 | CG2061-PA | 1..419 | 1..419 | 2259 | 100 | Plus |