Clone Sequence Records
BS05258.3prime Sequence
922 bp (825 high quality bases) assembled on 2005-12-02
> BS05258.3prime
ATGGTCTAGAAAGCTTTTAAATGCGAGCGCGTTGCAAGGCCATGGCTGGA
TAAATGAGCAGAAGTCCGCCGGCTATATAGGTGATCCTGGAGCCAACGCA
CCAGAAGGCAATGCATCCCACCACGGGGCCCAGAGCTCGAGCCAAAGCTC
CCAGTGAGCGGAATATGCCCAGTACTGAACCCTTCTGGTCATCGTTTCCG
TATTTGGATACGAGGGTGGTCAGACAGGTGACAGCGAAGGCTGTGGAGAT
TGCGAACAGGGTCATGCCGGCGTACAGCATCCGACTGCCCTCGGCTAGGC
CGACTACTACGAAGGCGGGTACAATCAGGTACAAACTGAAGATGGCATAG
CCTTTGATCTTCGCCTCGGGCAGCCGTCGGACCACCGATCCCTGCAGCAA
AGTCATGATTACACCCGTTGTCAAAAACATCTTCGCCTGATCCATCGAAG
TGTAACCGAATTTGTGGTACATCAGAAATGTGACGGTGAACTCCAAGCCG
GAATACAGAAAGAGATACAAGAAGTATACCAGGCCAATGGATCGCAGTGC
CGCAATGTCTTTCTTAGGCACATTTTTGATGGCAGCAAATCTAAATATGG
CCGAAAAATTGAGCAACTGCAGGCCATAAGACAGTGCAGATGATATCTCC
TTAACACGTTTCTCCTTGGGCAACGTTTCCCGCAGACAGCAGGCCAGGAC
CACAAGATCTCCAACTGCCAGGCCAAACGCCAGCAGAGAGGGCAACACAA
ACCAAGTACTTCCACTTTTATCGGAGAATATGGCGAACAGGGCTCCAATC
ATGGGCCCCACAATAAAGCCCAGCGAGAAGGCCACACCCACAAGGGGCAT
ACCGCGTCCACGGGTCTTAACGCTGGACACATCCGTAATGACGGACATGC
ACAGGGATATGTTGCCCTTGCT
BS05258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5760-PA | 1434 | rtet-RA | 529..1434 | 922..17 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 690..1595 | 922..17 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21110251..21110557 | 415..109 | 1535 | 100 | Minus |
3R | 32079331 | 3R | 21109331..21109589 | 922..664 | 1280 | 99.6 | Minus |
3R | 32079331 | 3R | 21110017..21110196 | 592..413 | 900 | 100 | Minus |
3R | 32079331 | 3R | 21110615..21110707 | 109..17 | 465 | 100 | Minus |
3R | 32079331 | 3R | 21109650..21109725 | 666..591 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:13:21 has no hits.
BS05258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:05 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-PA | 529..1434 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:57 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5760-PA | 529..1434 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:16 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 690..1599 | 13..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:20 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 690..1599 | 13..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:20 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21109331..21109588 | 665..922 | 99 | -> | Minus |
3R | 21109652..21109725 | 591..664 | 100 | -> | Minus |
3R | 21110019..21110194 | 415..590 | 100 | -> | Minus |
3R | 21110252..21110557 | 109..414 | 100 | -> | Minus |
3R | 21110616..21110711 | 13..108 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:16 Download gff for
BS05258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16935053..16935310 | 665..922 | 99 | -> | Minus |
arm_3R | 16935374..16935447 | 591..664 | 100 | -> | Minus |
arm_3R | 16935741..16935916 | 415..590 | 100 | -> | Minus |
arm_3R | 16935974..16936279 | 109..414 | 100 | -> | Minus |
arm_3R | 16936338..16936433 | 13..108 | 97 | | Minus |
BS05258.5prime Sequence
949 bp (744 high quality bases) assembled on 2005-11-29
> BS05258.5prime
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGAATCATTGGGCCTGGTATACTTCTT
BS05258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5760-PA | 1434 | rtet-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 162..1093 | 17..949 | 4610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21108607..21109050 | 17..460 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 21109246..21109589 | 460..803 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21109650..21109725 | 801..876 | 380 | 100 | Plus |
3R | 32079331 | 3R | 21110017..21110090 | 875..949 | 295 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:19 has no hits.
BS05258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:07 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-PA | 1..932 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:58 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5760-PA | 1..932 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:03 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 152..1093 | 7..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:36 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 152..1093 | 7..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:36 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21108597..21109050 | 7..460 | 99 | -> | Plus |
3R | 21109247..21109588 | 461..802 | 100 | -> | Plus |
3R | 21109652..21109725 | 803..876 | 100 | -> | Plus |
3R | 21110019..21110090 | 877..949 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:03 Download gff for
BS05258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16934319..16934772 | 7..460 | 99 | -> | Plus |
arm_3R | 16934969..16935310 | 461..802 | 100 | -> | Plus |
arm_3R | 16935374..16935447 | 803..876 | 100 | -> | Plus |
arm_3R | 16935741..16935812 | 877..949 | 95 | | Plus |
BS05258.complete Sequence
1466 bp (1466 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635088
> BS05258.complete
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGATCCATTGGCCTGGTATACTTCTTGT
ATCTCTTTCTGTATTCCGGCTTGGAGTTCACCGTCACATTTCTGATGTAC
CACAAATTCGGTTACACTTCGATGGATCAGGCGAAGATGTTTTTGACAAC
GGGTGTAATCATGACTTTGCTGCAGGGATCGGTGGTCCGACGGCTGCCCG
AGGCGAAGATCAAAGGCTATGCCATCTTCAGTTTGTACCTGATTGTACCC
GCCTTCGTAGTAGTCGGCCTAGCCGAGGGCAGTCGGATGCTGTACGCCGG
CATGACCCTGTTCGCAATCTCCACAGCCTTCGCTGTCACCTGTCTGACCA
CCCTCGTATCCAAATACGGAAACGATGACCAGAAGGGTTCAGTACTGGGC
ATATTCCGCTCACTGGGAGCTTTGGCTCGAGCTCTGGGCCCCGTGGTGGG
ATGCATTGCCTTCTGGTGCGTTGGCTCCAGGATCACCTATATAGCCGGCG
GACTTCTGCTCATTTATCCAGCCATGGCCTTGCAACGCGCTCGCATTTAA
AAGCTTTCTAGACCAT
BS05258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1434 | CG5760-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 162..1595 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21108607..21109050 | 17..460 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 21109246..21109589 | 460..803 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21110251..21110557 | 1052..1358 | 1535 | 100 | Plus |
3R | 32079331 | 3R | 21110017..21110196 | 875..1054 | 900 | 100 | Plus |
3R | 32079331 | 3R | 21110615..21110707 | 1358..1450 | 465 | 100 | Plus |
3R | 32079331 | 3R | 21109650..21109725 | 801..876 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:58:03 has no hits.
BS05258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:47 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:50 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 150..1597 | 7..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:01 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 162..1593 | 17..1448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:47 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 150..1597 | 7..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:21 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 162..1593 | 17..1448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:21 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21108607..21109050 | 17..460 | 100 | -> | Plus |
3R | 21109247..21109588 | 461..802 | 100 | -> | Plus |
3R | 21109652..21109725 | 803..876 | 100 | -> | Plus |
3R | 21110019..21110194 | 877..1052 | 100 | -> | Plus |
3R | 21110252..21110557 | 1053..1358 | 100 | -> | Plus |
3R | 21110616..21110705 | 1359..1448 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:01 Download gff for
BS05258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16934329..16934772 | 17..460 | 100 | -> | Plus |
arm_3R | 16934969..16935310 | 461..802 | 100 | -> | Plus |
arm_3R | 16935374..16935447 | 803..876 | 100 | -> | Plus |
arm_3R | 16935741..16935916 | 877..1052 | 100 | -> | Plus |
arm_3R | 16935974..16936279 | 1053..1358 | 100 | -> | Plus |
arm_3R | 16936338..16936427 | 1359..1448 | 100 | | Plus |
BS05258.pep Sequence
Translation from 16 to 1449
> BS05258.pep
MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI
YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL
LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG
IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG
MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV
VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA
ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT
LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA
ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW
CVGSRITYIAGGLLLIYPAMALQRARI*
BS05258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-PA | 477 | CG5760-PA | 1..477 | 1..477 | 2409 | 100 | Plus |
CG5078-PA | 447 | CG5078-PA | 59..376 | 111..450 | 182 | 23.3 | Plus |