Clone BS05258 Report

Search the DGRC for BS05258

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptrtet-RA
Protein status:BS05258.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05258.3prime Sequence

922 bp (825 high quality bases) assembled on 2005-12-02

> BS05258.3prime
ATGGTCTAGAAAGCTTTTAAATGCGAGCGCGTTGCAAGGCCATGGCTGGA
TAAATGAGCAGAAGTCCGCCGGCTATATAGGTGATCCTGGAGCCAACGCA
CCAGAAGGCAATGCATCCCACCACGGGGCCCAGAGCTCGAGCCAAAGCTC
CCAGTGAGCGGAATATGCCCAGTACTGAACCCTTCTGGTCATCGTTTCCG
TATTTGGATACGAGGGTGGTCAGACAGGTGACAGCGAAGGCTGTGGAGAT
TGCGAACAGGGTCATGCCGGCGTACAGCATCCGACTGCCCTCGGCTAGGC
CGACTACTACGAAGGCGGGTACAATCAGGTACAAACTGAAGATGGCATAG
CCTTTGATCTTCGCCTCGGGCAGCCGTCGGACCACCGATCCCTGCAGCAA
AGTCATGATTACACCCGTTGTCAAAAACATCTTCGCCTGATCCATCGAAG
TGTAACCGAATTTGTGGTACATCAGAAATGTGACGGTGAACTCCAAGCCG
GAATACAGAAAGAGATACAAGAAGTATACCAGGCCAATGGATCGCAGTGC
CGCAATGTCTTTCTTAGGCACATTTTTGATGGCAGCAAATCTAAATATGG
CCGAAAAATTGAGCAACTGCAGGCCATAAGACAGTGCAGATGATATCTCC
TTAACACGTTTCTCCTTGGGCAACGTTTCCCGCAGACAGCAGGCCAGGAC
CACAAGATCTCCAACTGCCAGGCCAAACGCCAGCAGAGAGGGCAACACAA
ACCAAGTACTTCCACTTTTATCGGAGAATATGGCGAACAGGGCTCCAATC
ATGGGCCCCACAATAAAGCCCAGCGAGAAGGCCACACCCACAAGGGGCAT
ACCGCGTCCACGGGTCTTAACGCTGGACACATCCGTAATGACGGACATGC
ACAGGGATATGTTGCCCTTGCT

BS05258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5760-PA 1434 rtet-RA 529..1434 922..17 4505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 690..1595 922..17 4515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21110251..21110557 415..109 1535 100 Minus
3R 32079331 3R 21109331..21109589 922..664 1280 99.6 Minus
3R 32079331 3R 21110017..21110196 592..413 900 100 Minus
3R 32079331 3R 21110615..21110707 109..17 465 100 Minus
3R 32079331 3R 21109650..21109725 666..591 380 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:13:21 has no hits.

BS05258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:05 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-PA 529..1434 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:57 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5760-PA 529..1434 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:16 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 690..1599 13..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:20 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 690..1599 13..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:20 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21109331..21109588 665..922 99 -> Minus
3R 21109652..21109725 591..664 100 -> Minus
3R 21110019..21110194 415..590 100 -> Minus
3R 21110252..21110557 109..414 100 -> Minus
3R 21110616..21110711 13..108 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:16 Download gff for BS05258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16935053..16935310 665..922 99 -> Minus
arm_3R 16935374..16935447 591..664 100 -> Minus
arm_3R 16935741..16935916 415..590 100 -> Minus
arm_3R 16935974..16936279 109..414 100 -> Minus
arm_3R 16936338..16936433 13..108 97   Minus

BS05258.5prime Sequence

949 bp (744 high quality bases) assembled on 2005-11-29

> BS05258.5prime
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGAATCATTGGGCCTGGTATACTTCTT

BS05258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5760-PA 1434 rtet-RA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 162..1093 17..949 4610 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21108607..21109050 17..460 2220 100 Plus
3R 32079331 3R 21109246..21109589 460..803 1720 100 Plus
3R 32079331 3R 21109650..21109725 801..876 380 100 Plus
3R 32079331 3R 21110017..21110090 875..949 295 96 Plus
Blast to na_te.dros performed on 2015-02-10 21:15:19 has no hits.

BS05258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:07 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-PA 1..932 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:32:58 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5760-PA 1..932 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:03 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 152..1093 7..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:36 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 152..1093 7..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:36 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21108597..21109050 7..460 99 -> Plus
3R 21109247..21109588 461..802 100 -> Plus
3R 21109652..21109725 803..876 100 -> Plus
3R 21110019..21110090 877..949 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:03 Download gff for BS05258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16934319..16934772 7..460 99 -> Plus
arm_3R 16934969..16935310 461..802 100 -> Plus
arm_3R 16935374..16935447 803..876 100 -> Plus
arm_3R 16935741..16935812 877..949 95   Plus

BS05258.complete Sequence

1466 bp (1466 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635088

> BS05258.complete
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGATCCATTGGCCTGGTATACTTCTTGT
ATCTCTTTCTGTATTCCGGCTTGGAGTTCACCGTCACATTTCTGATGTAC
CACAAATTCGGTTACACTTCGATGGATCAGGCGAAGATGTTTTTGACAAC
GGGTGTAATCATGACTTTGCTGCAGGGATCGGTGGTCCGACGGCTGCCCG
AGGCGAAGATCAAAGGCTATGCCATCTTCAGTTTGTACCTGATTGTACCC
GCCTTCGTAGTAGTCGGCCTAGCCGAGGGCAGTCGGATGCTGTACGCCGG
CATGACCCTGTTCGCAATCTCCACAGCCTTCGCTGTCACCTGTCTGACCA
CCCTCGTATCCAAATACGGAAACGATGACCAGAAGGGTTCAGTACTGGGC
ATATTCCGCTCACTGGGAGCTTTGGCTCGAGCTCTGGGCCCCGTGGTGGG
ATGCATTGCCTTCTGGTGCGTTGGCTCCAGGATCACCTATATAGCCGGCG
GACTTCTGCTCATTTATCCAGCCATGGCCTTGCAACGCGCTCGCATTTAA
AAGCTTTCTAGACCAT

BS05258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1434 CG5760-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 162..1595 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21108607..21109050 17..460 2220 100 Plus
3R 32079331 3R 21109246..21109589 460..803 1720 100 Plus
3R 32079331 3R 21110251..21110557 1052..1358 1535 100 Plus
3R 32079331 3R 21110017..21110196 875..1054 900 100 Plus
3R 32079331 3R 21110615..21110707 1358..1450 465 100 Plus
3R 32079331 3R 21109650..21109725 801..876 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:58:03 has no hits.

BS05258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:47 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 1..1434 17..1450 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:50 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 150..1597 7..1454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:01 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 162..1593 17..1448 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:47 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 150..1597 7..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:21 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 162..1593 17..1448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:21 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21108607..21109050 17..460 100 -> Plus
3R 21109247..21109588 461..802 100 -> Plus
3R 21109652..21109725 803..876 100 -> Plus
3R 21110019..21110194 877..1052 100 -> Plus
3R 21110252..21110557 1053..1358 100 -> Plus
3R 21110616..21110705 1359..1448 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:01 Download gff for BS05258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16934329..16934772 17..460 100 -> Plus
arm_3R 16934969..16935310 461..802 100 -> Plus
arm_3R 16935374..16935447 803..876 100 -> Plus
arm_3R 16935741..16935916 877..1052 100 -> Plus
arm_3R 16935974..16936279 1053..1358 100 -> Plus
arm_3R 16936338..16936427 1359..1448 100   Plus

BS05258.pep Sequence

Translation from 16 to 1449

> BS05258.pep
MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI
YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL
LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG
IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG
MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV
VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA
ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT
LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA
ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW
CVGSRITYIAGGLLLIYPAMALQRARI*

BS05258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-PA 477 CG5760-PA 1..477 1..477 2409 100 Plus
CG5078-PA 447 CG5078-PA 59..376 111..450 182 23.3 Plus