Clone BS05262 Report

Search the DGRC for BS05262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptwdb-RA
Protein status:BS05262.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05262.3prime Sequence

927 bp (867 high quality bases) assembled on 2005-12-02

> BS05262.3prime
ATGGTCTAGAAAGCTTTTAGTTGTCCGCCTTATCCTGTTTGATTTTCGCA
TTTGTGGTCGCAGGATTATTGTCGCCGCCGGCACCGCCGCTGGACAGGCT
ACCGCTGCTGCCGCTATTCGACTGCTGCTGATGAGAGTTCAGGCCAGCGG
AGCTGGGTGGCTGCAGGGACGTTGACGCCGCGGAAGCTGCGCTGTTCGAT
GTCGTGGCGCTGCCGCCGGCGGTGCGCCCACTAGAACGATTGGATTCGAG
TTCGTGCAGTTTCTTCCACAGTTCCTCGCGGTCACGCTCACGTTTTTTTT
CCTTTTGCCGCTCCGCCTTGTAGCTGGAGGTAAGCTCGTCGAACAGTTTC
GAATTCATCTCCATGAACGTCTTCAAAACGTTGTATACGAGCGCCACGAT
AGTTTGATTCCAGTGTTCCTTGCTGATGCGGTATAGGGCCGGGAACATGA
TCGGCATGATGACCGCATTGTTCTCCTCGATTAGCGACATGGCGTACTCA
TTGTTCCACAGATAAAGAGCTCGCTCAGCAACCTGAAAATGTGGACTCGA
CACGCATTTTGCAATCTGACGGAATAGCGGCTCCTGAATCTTGACAAACT
GCGGCGGATCGATCACATCGAGGATCTCCTCAATCTCGCCCAGGAACATG
ACCTCCTTCTGGGAACACGTCTTGGGCCAGAACTTCAGCAGGCCACGCAC
CACCGGTTCGGTAAGGAATGGATCCTTCTCTAGGAATTGTACAATGCAAT
ACGCCAGTTGAGCGTGGTAGAGCGACAGGCATTTGACTTTGTGCAGTGGC
AATAGGACCTTAACCAGAAACTGTTTGTGTTCGGCCTTCANGGGCAAGGC
GAATCCGTTGATGATACTGCCAAGGATTTCCAAGAGCTCACCGACTCCAT
TAAAGTGCTCCGTTTCGTAAATGAATC

BS05262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5643-PB 1575 wdb-RB 665..1575 927..17 4536 99.8 Minus
CG5643-PD 1575 wdb-RD 665..1575 927..17 4536 99.8 Minus
CG5643-PF 1575 wdb-RF 665..1575 927..17 4536 99.8 Minus
CG5643-PG 1575 wdb-RG 665..1575 927..17 4536 99.8 Minus
CG5643-PA 1575 wdb-RA 665..1575 927..17 4536 99.8 Minus
CG5643-PC 1575 wdb-RC 665..1575 927..17 4536 99.8 Minus
CG5643-PE 1575 wdb-RE 665..1575 927..17 4536 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 2282..3192 927..17 4544 99.9 Minus
wdb-RE 3635 CG5643-RE 2198..3108 927..17 4544 99.9 Minus
wdb-RC 6833 CG5643-RC 2029..2939 927..17 4544 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27566205..27566543 531..869 1684 99.7 Plus
3R 32079331 3R 27565569..27565854 17..302 1430 100 Plus
3R 32079331 3R 27565917..27566152 302..537 1180 100 Plus
3R 32079331 3R 27566605..27566665 867..927 305 100 Plus
3R 32079331 3R 18176003..18176210 927..720 204 73.1 Minus
Blast to na_te.dros performed on 2015-02-01 09:00:02 has no hits.

BS05262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:14 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-PC 665..1575 17..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:08 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5643-PE 665..1575 17..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:31:20 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 2029..2941 13..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:57:35 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 2029..2941 13..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:57:35 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27565567..27565854 13..302 99 <- Plus
3R 27565918..27566147 303..532 100 <- Plus
3R 27566207..27566540 533..866 99 <- Plus
3R 27566605..27566665 867..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:31:20 Download gff for BS05262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23391289..23391576 13..302 99 <- Plus
arm_3R 23391640..23391869 303..532 100 <- Plus
arm_3R 23391929..23392262 533..866 99 <- Plus
arm_3R 23392327..23392387 867..927 100   Plus

BS05262.5prime Sequence

900 bp (844 high quality bases) assembled on 2005-11-29

> BS05262.5prime
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTTACCG

BS05262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5643-PB 1575 wdb-RB 1..879 17..895 4395 100 Plus
CG5643-PD 1575 wdb-RD 1..879 17..895 4395 100 Plus
CG5643-PF 1575 wdb-RF 1..879 17..895 4395 100 Plus
CG5643-PG 1575 wdb-RG 1..879 17..895 4395 100 Plus
CG5643-PA 1575 wdb-RA 1..879 17..895 4395 100 Plus
CG5643-PC 1575 wdb-RC 1..879 17..895 4395 100 Plus
CG5643-PE 1575 wdb-RE 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 1618..2496 17..895 4395 100 Plus
wdb-RE 3635 CG5643-RE 1534..2412 17..895 4395 100 Plus
wdb-RC 6833 CG5643-RC 1365..2243 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27567152..27567353 355..154 1010 100 Minus
3R 32079331 3R 27566861..27567056 550..355 980 100 Minus
3R 32079331 3R 27566605..27566797 741..549 965 100 Minus
3R 32079331 3R 27566387..27566543 895..739 785 100 Minus
3R 32079331 3R 27567412..27567554 159..17 700 99.3 Minus
3R 32079331 3R 18175660..18175925 404..669 325 74.8 Plus
3R 32079331 3R 18176003..18176210 681..888 215 73.6 Plus
Blast to na_te.dros performed on 2015-02-12 20:07:15 has no hits.

BS05262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:15 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-PC 1..883 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:10 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5643-PE 1..883 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:32 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2247 17..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:20 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2247 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:20 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27566383..27566540 742..900 99 <- Minus
3R 27566605..27566795 551..741 100 <- Minus
3R 27566861..27567055 356..550 100 <- Minus
3R 27567152..27567351 156..355 100 <- Minus
3R 27567416..27567554 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:32 Download gff for BS05262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23392105..23392262 742..900 99 <- Minus
arm_3R 23392327..23392517 551..741 100 <- Minus
arm_3R 23392583..23392777 356..550 100 <- Minus
arm_3R 23392874..23393073 156..355 100 <- Minus
arm_3R 23393138..23393276 17..155 100   Minus

BS05262.complete Sequence

1607 bp (1607 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635089

> BS05262.complete
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTACCGA
ACCGGTGGTGCGTGGCCTGCTGAAGTTCTGGCCCAAGACGTGTTCCCAGA
AGGAGGTCATGTTCCTGGGCGAGATTGAGGAGATCCTCGATGTGATCGAT
CCGCCGCAGTTTGTCAAGATTCAGGAGCCGCTATTCCGTCAGATTGCAAA
ATGCGTGTCGAGTCCACATTTTCAGGTTGCTGAGCGAGCTCTTTATCTGT
GGAACAATGAGTACGCCATGTCGCTAATCGAGGAGAACAATGCGGTCATC
ATGCCGATCATGTTCCCGGCCCTATACCGCATCAGCAAGGAACACTGGAA
TCAAACTATCGTGGCGCTCGTATACAACGTTTTGAAGACGTTCATGGAGA
TGAATTCGAAACTGTTCGACGAGCTTACCTCCAGCTACAAGGCGGAGCGG
CAAAAGGAAAAAAAACGTGAGCGTGACCGCGAGGAACTGTGGAAGAAACT
GCACGAACTCGAATCCAATCGTTCTAGTGGGCGCACCGCCGGCGGCAGCG
CCACGACATCGAACAGCGCAGCTTCCGCGGCGTCAACGTCCCTGCAGCCA
CCCAGCTCCGCTGGCCTGAACTCTCATCAGCAGCAGTCGAATAGCGGCAG
CAGCGGTAGCCTGTCCAGCGGCGGTGCCGGCGGCGACAATAATCCTGCGA
CCACAAATGCGAAAATCAAACAGGATAAGGCGGACAACTAAAAGCTTTCT
AGACCAT

BS05262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 1575 CG5643-PF 1..1575 17..1591 7875 100 Plus
wdb-RE 1575 CG5643-PE 1..1575 17..1591 7875 100 Plus
wdb-RC 1575 CG5643-PC 1..1575 17..1591 7875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 1618..3192 17..1591 7875 100 Plus
wdb-RE 3635 CG5643-RE 1534..3108 17..1591 7875 100 Plus
wdb-RC 6833 CG5643-RC 1365..2939 17..1591 7875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27566205..27566543 1077..739 1695 100 Minus
3R 32079331 3R 27565569..27565854 1591..1306 1430 100 Minus
3R 32079331 3R 27565917..27566152 1306..1071 1180 100 Minus
3R 32079331 3R 27567152..27567353 355..154 1010 100 Minus
3R 32079331 3R 27566861..27567056 550..355 980 100 Minus
3R 32079331 3R 27566605..27566797 741..549 965 100 Minus
3R 32079331 3R 27567412..27567554 159..17 700 99.3 Minus
3R 32079331 3R 18175660..18175925 404..669 325 74.8 Plus
3R 32079331 3R 18176003..18176210 681..888 215 73.6 Plus
Blast to na_te.dros performed on 2014-11-26 22:17:23 has no hits.

BS05262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:48 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1..1575 17..1591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:52 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1203..2779 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:11 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2937 17..1589 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:48 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1203..2779 17..1595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:38 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2937 17..1589 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:38 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27565571..27565854 1306..1589 100 <- Minus
3R 27565918..27566147 1076..1305 100 <- Minus
3R 27566207..27566540 742..1075 100 <- Minus
3R 27566605..27566795 551..741 100 <- Minus
3R 27566861..27567055 356..550 100 <- Minus
3R 27567152..27567351 156..355 100 <- Minus
3R 27567416..27567554 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:11 Download gff for BS05262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23393138..23393276 17..155 100   Minus
arm_3R 23391293..23391576 1306..1589 100 <- Minus
arm_3R 23391640..23391869 1076..1305 100 <- Minus
arm_3R 23391929..23392262 742..1075 100 <- Minus
arm_3R 23392327..23392517 551..741 100 <- Minus
arm_3R 23392583..23392777 356..550 100 <- Minus
arm_3R 23392874..23393073 156..355 100 <- Minus

BS05262.pep Sequence

Translation from 16 to 1590

> BS05262.pep
MSSGTFVDRIDPFAKRSLKKKGKKSQGSSRYRNSQDVELQQLPPLKADCS
SLEQEELFIRKLRQCCVSFDFMDPVTDLKGKEIKRAALNDLSTYITHGRG
VLTEPVYPEIIRMISCNLFRTLPPSENPDFDPEEDDPTLEASWPHLQLVY
EVFLRFLESQDFQATIGKRVIDQKFVLQLLELFDSEDPRERDFLKTVLHR
IYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVGELLEILGSIINGFALP
LKAEHKQFLVKVLLPLHKVKCLSLYHAQLAYCIVQFLEKDPFLTEPVVRG
LLKFWPKTCSQKEVMFLGEIEEILDVIDPPQFVKIQEPLFRQIAKCVSSP
HFQVAERALYLWNNEYAMSLIEENNAVIMPIMFPALYRISKEHWNQTIVA
LVYNVLKTFMEMNSKLFDELTSSYKAERQKEKKRERDREELWKKLHELES
NRSSGRTAGGSATTSNSAASAASTSLQPPSSAGLNSHQQQSNSGSSGSLS
SGGAGGDNNPATTNAKIKQDKADN*

BS05262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-PF 524 CG5643-PF 1..524 1..524 2707 100 Plus
wdb-PE 524 CG5643-PE 1..524 1..524 2707 100 Plus
wdb-PC 524 CG5643-PC 1..524 1..524 2707 100 Plus
wdb-PA 524 CG5643-PA 1..524 1..524 2707 100 Plus
wdb-PD 524 CG5643-PD 1..524 1..524 2707 100 Plus