Clone Sequence Records
BS05262.3prime Sequence
927 bp (867 high quality bases) assembled on 2005-12-02
> BS05262.3prime
ATGGTCTAGAAAGCTTTTAGTTGTCCGCCTTATCCTGTTTGATTTTCGCA
TTTGTGGTCGCAGGATTATTGTCGCCGCCGGCACCGCCGCTGGACAGGCT
ACCGCTGCTGCCGCTATTCGACTGCTGCTGATGAGAGTTCAGGCCAGCGG
AGCTGGGTGGCTGCAGGGACGTTGACGCCGCGGAAGCTGCGCTGTTCGAT
GTCGTGGCGCTGCCGCCGGCGGTGCGCCCACTAGAACGATTGGATTCGAG
TTCGTGCAGTTTCTTCCACAGTTCCTCGCGGTCACGCTCACGTTTTTTTT
CCTTTTGCCGCTCCGCCTTGTAGCTGGAGGTAAGCTCGTCGAACAGTTTC
GAATTCATCTCCATGAACGTCTTCAAAACGTTGTATACGAGCGCCACGAT
AGTTTGATTCCAGTGTTCCTTGCTGATGCGGTATAGGGCCGGGAACATGA
TCGGCATGATGACCGCATTGTTCTCCTCGATTAGCGACATGGCGTACTCA
TTGTTCCACAGATAAAGAGCTCGCTCAGCAACCTGAAAATGTGGACTCGA
CACGCATTTTGCAATCTGACGGAATAGCGGCTCCTGAATCTTGACAAACT
GCGGCGGATCGATCACATCGAGGATCTCCTCAATCTCGCCCAGGAACATG
ACCTCCTTCTGGGAACACGTCTTGGGCCAGAACTTCAGCAGGCCACGCAC
CACCGGTTCGGTAAGGAATGGATCCTTCTCTAGGAATTGTACAATGCAAT
ACGCCAGTTGAGCGTGGTAGAGCGACAGGCATTTGACTTTGTGCAGTGGC
AATAGGACCTTAACCAGAAACTGTTTGTGTTCGGCCTTCANGGGCAAGGC
GAATCCGTTGATGATACTGCCAAGGATTTCCAAGAGCTCACCGACTCCAT
TAAAGTGCTCCGTTTCGTAAATGAATC
BS05262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5643-PB | 1575 | wdb-RB | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PD | 1575 | wdb-RD | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PF | 1575 | wdb-RF | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PG | 1575 | wdb-RG | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PA | 1575 | wdb-RA | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PC | 1575 | wdb-RC | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
CG5643-PE | 1575 | wdb-RE | 665..1575 | 927..17 | 4536 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 2282..3192 | 927..17 | 4544 | 99.9 | Minus |
wdb-RE | 3635 | CG5643-RE | 2198..3108 | 927..17 | 4544 | 99.9 | Minus |
wdb-RC | 6833 | CG5643-RC | 2029..2939 | 927..17 | 4544 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27566205..27566543 | 531..869 | 1684 | 99.7 | Plus |
3R | 32079331 | 3R | 27565569..27565854 | 17..302 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 27565917..27566152 | 302..537 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 27566605..27566665 | 867..927 | 305 | 100 | Plus |
3R | 32079331 | 3R | 18176003..18176210 | 927..720 | 204 | 73.1 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:00:02 has no hits.
BS05262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:14 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-PC | 665..1575 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:08 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5643-PE | 665..1575 | 17..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:31:20 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 2029..2941 | 13..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:57:35 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 2029..2941 | 13..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:57:35 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27565567..27565854 | 13..302 | 99 | <- | Plus |
3R | 27565918..27566147 | 303..532 | 100 | <- | Plus |
3R | 27566207..27566540 | 533..866 | 99 | <- | Plus |
3R | 27566605..27566665 | 867..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:31:20 Download gff for
BS05262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23391289..23391576 | 13..302 | 99 | <- | Plus |
arm_3R | 23391640..23391869 | 303..532 | 100 | <- | Plus |
arm_3R | 23391929..23392262 | 533..866 | 99 | <- | Plus |
arm_3R | 23392327..23392387 | 867..927 | 100 | | Plus |
BS05262.5prime Sequence
900 bp (844 high quality bases) assembled on 2005-11-29
> BS05262.5prime
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTTACCG
BS05262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5643-PB | 1575 | wdb-RB | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PD | 1575 | wdb-RD | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PF | 1575 | wdb-RF | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PG | 1575 | wdb-RG | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PA | 1575 | wdb-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PC | 1575 | wdb-RC | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5643-PE | 1575 | wdb-RE | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 1618..2496 | 17..895 | 4395 | 100 | Plus |
wdb-RE | 3635 | CG5643-RE | 1534..2412 | 17..895 | 4395 | 100 | Plus |
wdb-RC | 6833 | CG5643-RC | 1365..2243 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27567152..27567353 | 355..154 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 27566861..27567056 | 550..355 | 980 | 100 | Minus |
3R | 32079331 | 3R | 27566605..27566797 | 741..549 | 965 | 100 | Minus |
3R | 32079331 | 3R | 27566387..27566543 | 895..739 | 785 | 100 | Minus |
3R | 32079331 | 3R | 27567412..27567554 | 159..17 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 18175660..18175925 | 404..669 | 325 | 74.8 | Plus |
3R | 32079331 | 3R | 18176003..18176210 | 681..888 | 215 | 73.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:07:15 has no hits.
BS05262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:15 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-PC | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:10 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5643-PE | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:32 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2247 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:20 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2247 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:20 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27566383..27566540 | 742..900 | 99 | <- | Minus |
3R | 27566605..27566795 | 551..741 | 100 | <- | Minus |
3R | 27566861..27567055 | 356..550 | 100 | <- | Minus |
3R | 27567152..27567351 | 156..355 | 100 | <- | Minus |
3R | 27567416..27567554 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:32 Download gff for
BS05262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23392105..23392262 | 742..900 | 99 | <- | Minus |
arm_3R | 23392327..23392517 | 551..741 | 100 | <- | Minus |
arm_3R | 23392583..23392777 | 356..550 | 100 | <- | Minus |
arm_3R | 23392874..23393073 | 156..355 | 100 | <- | Minus |
arm_3R | 23393138..23393276 | 17..155 | 100 | | Minus |
BS05262.complete Sequence
1607 bp (1607 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635089
> BS05262.complete
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTACCGA
ACCGGTGGTGCGTGGCCTGCTGAAGTTCTGGCCCAAGACGTGTTCCCAGA
AGGAGGTCATGTTCCTGGGCGAGATTGAGGAGATCCTCGATGTGATCGAT
CCGCCGCAGTTTGTCAAGATTCAGGAGCCGCTATTCCGTCAGATTGCAAA
ATGCGTGTCGAGTCCACATTTTCAGGTTGCTGAGCGAGCTCTTTATCTGT
GGAACAATGAGTACGCCATGTCGCTAATCGAGGAGAACAATGCGGTCATC
ATGCCGATCATGTTCCCGGCCCTATACCGCATCAGCAAGGAACACTGGAA
TCAAACTATCGTGGCGCTCGTATACAACGTTTTGAAGACGTTCATGGAGA
TGAATTCGAAACTGTTCGACGAGCTTACCTCCAGCTACAAGGCGGAGCGG
CAAAAGGAAAAAAAACGTGAGCGTGACCGCGAGGAACTGTGGAAGAAACT
GCACGAACTCGAATCCAATCGTTCTAGTGGGCGCACCGCCGGCGGCAGCG
CCACGACATCGAACAGCGCAGCTTCCGCGGCGTCAACGTCCCTGCAGCCA
CCCAGCTCCGCTGGCCTGAACTCTCATCAGCAGCAGTCGAATAGCGGCAG
CAGCGGTAGCCTGTCCAGCGGCGGTGCCGGCGGCGACAATAATCCTGCGA
CCACAAATGCGAAAATCAAACAGGATAAGGCGGACAACTAAAAGCTTTCT
AGACCAT
BS05262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 1575 | CG5643-PF | 1..1575 | 17..1591 | 7875 | 100 | Plus |
wdb-RE | 1575 | CG5643-PE | 1..1575 | 17..1591 | 7875 | 100 | Plus |
wdb-RC | 1575 | CG5643-PC | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 1618..3192 | 17..1591 | 7875 | 100 | Plus |
wdb-RE | 3635 | CG5643-RE | 1534..3108 | 17..1591 | 7875 | 100 | Plus |
wdb-RC | 6833 | CG5643-RC | 1365..2939 | 17..1591 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27566205..27566543 | 1077..739 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 27565569..27565854 | 1591..1306 | 1430 | 100 | Minus |
3R | 32079331 | 3R | 27565917..27566152 | 1306..1071 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 27567152..27567353 | 355..154 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 27566861..27567056 | 550..355 | 980 | 100 | Minus |
3R | 32079331 | 3R | 27566605..27566797 | 741..549 | 965 | 100 | Minus |
3R | 32079331 | 3R | 27567412..27567554 | 159..17 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 18175660..18175925 | 404..669 | 325 | 74.8 | Plus |
3R | 32079331 | 3R | 18176003..18176210 | 681..888 | 215 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:17:23 has no hits.
BS05262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:48 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1..1575 | 17..1591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:52 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1203..2779 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:11 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2937 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:48 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1203..2779 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:38 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2937 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:38 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27565571..27565854 | 1306..1589 | 100 | <- | Minus |
3R | 27565918..27566147 | 1076..1305 | 100 | <- | Minus |
3R | 27566207..27566540 | 742..1075 | 100 | <- | Minus |
3R | 27566605..27566795 | 551..741 | 100 | <- | Minus |
3R | 27566861..27567055 | 356..550 | 100 | <- | Minus |
3R | 27567152..27567351 | 156..355 | 100 | <- | Minus |
3R | 27567416..27567554 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:11 Download gff for
BS05262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23393138..23393276 | 17..155 | 100 | | Minus |
arm_3R | 23391293..23391576 | 1306..1589 | 100 | <- | Minus |
arm_3R | 23391640..23391869 | 1076..1305 | 100 | <- | Minus |
arm_3R | 23391929..23392262 | 742..1075 | 100 | <- | Minus |
arm_3R | 23392327..23392517 | 551..741 | 100 | <- | Minus |
arm_3R | 23392583..23392777 | 356..550 | 100 | <- | Minus |
arm_3R | 23392874..23393073 | 156..355 | 100 | <- | Minus |
BS05262.pep Sequence
Translation from 16 to 1590
> BS05262.pep
MSSGTFVDRIDPFAKRSLKKKGKKSQGSSRYRNSQDVELQQLPPLKADCS
SLEQEELFIRKLRQCCVSFDFMDPVTDLKGKEIKRAALNDLSTYITHGRG
VLTEPVYPEIIRMISCNLFRTLPPSENPDFDPEEDDPTLEASWPHLQLVY
EVFLRFLESQDFQATIGKRVIDQKFVLQLLELFDSEDPRERDFLKTVLHR
IYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVGELLEILGSIINGFALP
LKAEHKQFLVKVLLPLHKVKCLSLYHAQLAYCIVQFLEKDPFLTEPVVRG
LLKFWPKTCSQKEVMFLGEIEEILDVIDPPQFVKIQEPLFRQIAKCVSSP
HFQVAERALYLWNNEYAMSLIEENNAVIMPIMFPALYRISKEHWNQTIVA
LVYNVLKTFMEMNSKLFDELTSSYKAERQKEKKRERDREELWKKLHELES
NRSSGRTAGGSATTSNSAASAASTSLQPPSSAGLNSHQQQSNSGSSGSLS
SGGAGGDNNPATTNAKIKQDKADN*
BS05262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-PF | 524 | CG5643-PF | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PE | 524 | CG5643-PE | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PC | 524 | CG5643-PC | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PA | 524 | CG5643-PA | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PD | 524 | CG5643-PD | 1..524 | 1..524 | 2707 | 100 | Plus |