Clone Sequence Records
BS05265.complete Sequence
2258 bp assembled on 2009-12-07
GenBank Submission: KX793791
> BS05265.complete
GAAGTTATCAGTCGACATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTC
CCGAGGCGGTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGA
CAGAAGGAGGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAG
CTGCGGACCCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTT
ACATTTCCTTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTAC
AACATTCACTATGTGATGAACATTACGGACATCGACGACAAGATCATAAG
GCGTGCGCGGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAA
AGCTGCCACTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGG
TTTCAGGATACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCT
CGACAAGACACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGG
CCGTTGGCAAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTAC
CTAAACGAAGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGG
TGCTCAGATCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGG
AAGACCAGTTCCACAACGACATGAAATCGCTAAATATTCTCCCGCCAGAT
GTTTTAACTCGCGTTTCGGAGTACGTGCCACAAATCGTCACCTTTATTCA
AAAGATTATCGACAATGGCTTGGCCTATGCAGCCAACAACTCCGTTTATT
TCGATGTAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTG
GTGCCAGAAGCATATGGCGACACCAAGTCCCTGCAAGAAGGTGAAGGCGA
TCTGTCCATCGCAGAGGATCGTCTCTCCGAGAAGCGTTCTGCCAATGACT
TTGCCTTGTGGAAGGCGAGCAAAGCCGGCGAACCCTGGTGGGATAGCCCT
TGGGGCAAGGGCCGTCCAGGCTGGCACATTGAATGCTCGGCCATGGCCTC
GGATATCTTTGGGCCCACGTTTGATATACACACTGGCGGTGTGGACTTAA
AGTTCCCTCATCACGACAACGAGCTTGCCCAATCGGAGGCCGCTTTTAAT
GAGTCGGAGTGGGTTAAGTACTTCCTGCACACGGGTCACCTCACCATAGC
TGGCTGCAAGATGTCCAAGTCGCTGAAGAACTTTGTCACCATCCAGGAAG
CTCTTAAAAAGCATTCCGCCACCCAGCTGCGACTGGCGTTCCTGCTACAC
TCGTGGAAGGATACTCTTGACTACTCAGAAAACACCATGGAAATGGCCAC
CCAATACGAAAAGTTCCTCAATGAGTTCTTCCTGAATGTCAAGGATCTGA
CGCGGCATGTGCTCTCCGAAGAGCCCCGCCGGCAGTTTGATGCCTGGACA
GAAGTTGAGGCGGCTTTGCAGAAGAAATTCTCAAATGCTCAGGTCCAAGT
ACACGCCAGCTTGTGTGACAACATTGATACTCGCAGCGCCCTTGACGCCA
TTCGAGAGCTGGTATCCGTGTCCAATGTCTACATTCGCGACAATAAGACT
AGACTCAACAGTCTGCTGCTCCGAAACGTAGCCACATATATCACCGATCT
GTTGCACGTGTTTGGCGCAATATCTGGTCCTCGCGGTGGCATTGGCTTCC
CCGTTAGTGGTGGCTCGGGAGCACAAGCTGCCGGCGCGGATTTAGAAACT
ACGGTTTTGCCTTACGTTCAATCGCTGGCTGAATTCCGCTACTTGGTGCG
GGAGCAAGCCAAAACTCTGAAGGCCTTCGACATCCTGAAGCTCTGCGATG
ATCTACGCGACAATGTGCTGCCCAATTTGGGCGTGCGACTGGAGGACAAG
GATATTGGAAAGTATGCCGTAAAGCTAGTCGACCGCGACTCACTTTTACG
AGAACGGGAGGCAAAGCTGGCCGCCGAAGCGGAGAAGGCAGCAGAAAAGG
AGCGCAAGAAGCAGGCGGCTGCGGAGGCTGCAGCTGCGAAAGAAGCCCAG
CGACGTGTGAATCCCAAGGAAATGTTCCTGGCCGAAACCGAAAAGTACTC
AGCGTTCGACGAAAATGGCCTTCCCACTCACGACAAGGAGGGCAAAGAAG
TCAGTAAAGGACAGATCAAGAAGCTGCAGAAACTCCAACAGCAGCAGGAA
CAGCGTTACAATGAGTATTTGGCATCAATTGAGAAAGCCTGAAAGCTTTC
TAGACCAT
BS05265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-RA | 2226 | CG8431-PA | 1..2226 | 17..2242 | 11130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-RA | 2453 | CG8431-RA | 90..2315 | 17..2242 | 11130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16144027..16144714 | 686..1373 | 3440 | 100 | Plus |
| 2R | 25286936 | 2R | 16144979..16145579 | 1517..2117 | 3005 | 100 | Plus |
| 2R | 25286936 | 2R | 16143480..16143971 | 194..685 | 2460 | 100 | Plus |
| 2R | 25286936 | 2R | 16143236..16143414 | 17..195 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16144773..16144917 | 1373..1517 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 16145643..16145768 | 2117..2242 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:26:15 has no hits.
BS05265.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:01 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 87..2311 | 17..2241 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:14 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..2314 | 17..2241 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:03 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 87..2311 | 17..2241 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:25 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..2314 | 17..2241 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:25 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16143236..16143414 | 17..195 | 100 | -> | Plus |
| 2R | 16143482..16143971 | 196..685 | 100 | -> | Plus |
| 2R | 16144027..16144713 | 686..1372 | 100 | -> | Plus |
| 2R | 16144773..16144917 | 1373..1517 | 100 | -> | Plus |
| 2R | 16144980..16145578 | 1518..2116 | 100 | -> | Plus |
| 2R | 16145643..16145767 | 2117..2241 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:14 Download gff for
BS05265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12030741..12030919 | 17..195 | 100 | -> | Plus |
| arm_2R | 12030987..12031476 | 196..685 | 100 | -> | Plus |
| arm_2R | 12031532..12032218 | 686..1372 | 100 | -> | Plus |
| arm_2R | 12032278..12032422 | 1373..1517 | 100 | -> | Plus |
| arm_2R | 12032485..12033083 | 1518..2116 | 100 | -> | Plus |
| arm_2R | 12033148..12033272 | 2117..2241 | 100 | | Plus |
BS05265.3prime Sequence
918 bp (790 high quality bases) assembled on 2005-12-02
> BS05265.3prime
ATGGTCTAGAAAGCTTTCAGGCTTTCTCAATTGATGCCAAATACTCATTG
TAACGCTGTTCCTGCTGCTGTTGGAGTTTCTGCAGCTTCTTGATCTGTCC
TTTACTGACTTCTTTGCCCTCCTTGTCGTGAGTGGGAAGGCCATTTTCGT
CGAACGCTGAGTACTTTTCGGTTTCGGCCAGGAACATTTCCTTGGGATTC
ACACGTCGCTGGGCTTCTTTCGCAGCTGCAGCCTCCGCAGCCGCCTGCTT
CTTGCGCTCCTTTTCTGCTGCCTTCTCCGCTTCGGCGGCCAGCTTTGCCT
CCCGTTCTCGTAAAAGTGAGTCGCGGTCGACTAGCTTTACGGCATACTTT
CCAATATCCTTGTCCTCCAGTCGCACGCCCAAATTGGGCAGCACATTGTC
GCGTAGATCATCGCAGAGCTTCAGGATGTCGAAGGCCTTCAGAGTTTTGG
CTTGCTCCCGCACCAAGTAGCGGAATTCAGCCAGCGATTGAACGTAAGGC
AAAACCGTAGTTTCTAAATCCGCGCCGGCAGCTTGTGCTCCCGAGCCACC
ACTAACGGGGAAGCCAATGCCACCGCGAGGACCAGATATTGCGCCAAACA
CGTGCAACAGATCGGTGATATATGTGGCTACGTTTCGGAGCAGCAGACTG
TTGAGTCTAGTCTTATTGTCGCGAATGTAGACATTGGACACGGATACCAG
CTCTCGAATGGCGTCAAGGGCGCTGCGAGTATCAATGTTGTCACACAAGC
TGGCGTGTACTTGGACCTGAGCATTTGAGAATTTCTTCTGCAAAGCCGCC
TCAACTTCTGTCCAGGCATCAAACTGCCGGCGGGGCTCTTCGGAGAGCAC
ATGCCGCGTCAGATCCTTGACATTCAGGAAGAACTCATTGAGGAACTTTT
CGTATTGGGTGCCATTTC
BS05265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8431-PA | 2226 | Aats-cys-RA | 1332..2226 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-RA | 2453 | CG8431-RA | 1413..2315 | 918..17 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16144979..16145579 | 742..142 | 3005 | 100 | Minus |
| 2R | 25286936 | 2R | 16144773..16144917 | 886..742 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 16145643..16145768 | 142..17 | 630 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6791 | 115..55 | 110 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6812 | 115..55 | 110 | 68.9 | Minus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4497..4561 | 115..51 | 109 | 63.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2361 | 90..55 | 108 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6770 | 90..55 | 108 | 77.8 | Minus |
BS05265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:20 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8431-PA | 1324..2226 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:17 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8431-PA | 1324..2226 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:48:47 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 1413..2320 | 12..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:31 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 1413..2320 | 12..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:31 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16144681..16144713 | 887..918 | 96 | -> | Minus |
| 2R | 16144773..16144917 | 742..886 | 100 | -> | Minus |
| 2R | 16144980..16145578 | 143..741 | 100 | -> | Minus |
| 2R | 16145643..16145773 | 12..142 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:48:47 Download gff for
BS05265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12032186..12032218 | 887..918 | 96 | -> | Minus |
| arm_2R | 12032278..12032422 | 742..886 | 100 | -> | Minus |
| arm_2R | 12032485..12033083 | 143..741 | 100 | -> | Minus |
| arm_2R | 12033148..12033278 | 12..142 | 98 | | Minus |
BS05265.5prime Sequence
855 bp (770 high quality bases) assembled on 2005-12-02
> BS05265.5prime
GAAGTTATCAGTCGACATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTC
CCGAGGCGGTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGA
CAGAAGGAGGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAG
CTGCGGACCCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTT
ACATTTCCTTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTAC
AACATTCACTATGTGATGAACATTACGGACATCGACGACAAGATCATAAG
GCGTGCGCGGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAA
AGCTGCCACTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGG
TTTCAGGATACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCT
CGACAAGACACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGG
CCGTTGGCAAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTAC
CTAAACGAAGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGG
TGCTCAGATCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGG
AAGACCAGTTCCACAACGACATGAAATCGCTAAATATTCTCCCGCCAGAT
GTTTTAACTCGCGTTTCGGAGTACGTGCCACAAATCGTCACCTTTATTCA
AAAGATTATCGACAATGGCTTGGCCTATGCAGCCAACAACTCCGTTTATT
TCGATGTAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTG
GTGCC
BS05265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8431-PA | 2226 | Aats-cys-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-RA | 2453 | CG8431-RA | 90..928 | 17..855 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16143480..16143971 | 194..685 | 2460 | 100 | Plus |
| 2R | 25286936 | 2R | 16143236..16143414 | 17..195 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16144027..16144196 | 686..855 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:17:41 has no hits.
BS05265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:21 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8431-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:18 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8431-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:49:38 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..928 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:52 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..928 | 17..855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:52 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16143236..16143414 | 17..195 | 100 | -> | Plus |
| 2R | 16143482..16143971 | 196..685 | 100 | -> | Plus |
| 2R | 16144027..16144196 | 686..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:49:38 Download gff for
BS05265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12030741..12030919 | 17..195 | 100 | -> | Plus |
| arm_2R | 12030987..12031476 | 196..685 | 100 | -> | Plus |
| arm_2R | 12031532..12031701 | 686..855 | 100 | | Plus |
BS05265.pep Sequence
Translation from 16 to 2241
> BS05265.pep
MSKRGQPAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTV
YDASHMGHARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQN
HLFDEYAAEAQKLPLDELLGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQ
RMNDAVEALTKAVGKGDEREISEKRLLYLNEAKDPISDWLDSLKGAQIND
NAVFEALPRYWEDQFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDN
GLAYAANNSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSIAE
DRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASDIFGP
TFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMS
KSLKNFVTIQEALKKHSATQLRLAFLLHSWKDTLDYSENTMEMATQYEKF
LNEFFLNVKDLTRHVLSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLC
DNIDTRSALDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFG
AISGPRGGIGFPVSGGSGAQAAGADLETTVLPYVQSLAEFRYLVREQAKT
LKAFDILKLCDDLRDNVLPNLGVRLEDKDIGKYAVKLVDRDSLLREREAK
LAAEAEKAAEKERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDEN
GLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIEKA*
BS05265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-PA | 741 | CG8431-PA | 1..741 | 1..741 | 3854 | 100 | Plus |
| CG8257-PB | 558 | CG8257-PB | 132..558 | 204..654 | 538 | 33.6 | Plus |
| CG8257-PA | 558 | CG8257-PA | 132..558 | 204..654 | 538 | 33.6 | Plus |
| CG8257-PB | 558 | CG8257-PB | 48..126 | 20..98 | 237 | 53.2 | Plus |
| CG8257-PA | 558 | CG8257-PA | 48..126 | 20..98 | 237 | 53.2 | Plus |
