Clone Sequence Records
BS05267.3prime Sequence
973 bp (818 high quality bases) assembled on 2005-12-02
> BS05267.3prime
ATGGTCTAGAAAGCTTTTAGATCTTTTCGCGCTTCTTGAAATTCCTTTTC
GAAGCGCAGCGGGTGATTATATTAGAAACGTGTGGCTTATGCTCGAAGAT
CTTCATTAACTGATTCTGTGCCTCGTTGATGCCATCGGTAATAATCTTGC
TGCGTTGAATGTTTCCCTTTAGCAGTTCAGTGACTCGCTCAATTTCGCTG
TGCTTCTCCTTGTCCTTTTCGAGATCCTGCAGCATGGTCTCCAGCCTGCC
CAGACTAAAGACTTCCGATTCATTCAAGTCCTCCATTTGCGAGCGTAAAT
GATAAATTTTCCATCCATTGATTTTGCCCTGCACATTTGGCTGATTGGCC
AAATCAATGACTGTGGCCCGCCGCTCCTCCCTTGGCTTAACATCAGTGTA
CCGATGAAAATGATTGTTGGCCAACTTATGTGTGGGCTTATACGTATTGA
GCAAAGCACAATTGCGCGGACGACGAATCACAAAGTCGACGGGATTTGCG
TTCTCCTTGTTGCCCGCCACAGCAGGTGTACTGTTCCGGTGGTTGGCATC
GCCTGGCGCACTGTTGGGAGCAACACCCGGGGTCGCTGCTGTCACCAGTA
GTCCTCCATTGTTGTGCTTCTGCATGTACGAAGCGCCAGCCGGCGGCGTT
GGCTCCGAACTTGGAGGTGGCAGCGATAAGGATGCTTGACTCTGCGTAGA
GTGCTGGCTGTCATTGGTCGATCGTCGCGGCTTTTTCCTAGAGGAGCAGT
CATAACTGGAGCTGGAGCTATTACCAGTACCATTCATACGCGTTCCTTGT
TGCATCTGCGTCGATCCCACCAAATGAGGCACCTGCTGAGGCTGCTGTTG
CTGCGGCGTTGGTGCTTGCACATCCACAAAGGCACTGCTACCACTGCGGG
CTCCCAGTGAGGAGTGACCAAAGTTCTGCTGAATCGATTGGTGTGATGAG
TACATCTCATTAATGGGATTAAA
BS05267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11006-PA | 3660 | CG11006-RA | 2704..3660 | 973..17 | 4735 | 99.7 | Minus |
CG11006-PB | 3774 | CG11006-RB | 2818..3774 | 973..17 | 4735 | 99.7 | Minus |
CG11006-PC | 3885 | CG11006-RC | 2929..3885 | 973..17 | 4735 | 99.7 | Minus |
CG11006-PD | 3819 | CG11006-RD | 2863..3819 | 973..17 | 4735 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap130-RB | 4159 | CG11006-RB | 2996..3955 | 973..14 | 4770 | 99.8 | Minus |
Sap130-RE | 4060 | CG11006-RE | 2897..3856 | 973..14 | 4770 | 99.8 | Minus |
Sap130-RC | 4270 | CG11006-RC | 3107..4066 | 973..14 | 4770 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12811950..12812220 | 716..446 | 1355 | 100 | Minus |
3L | 28110227 | 3L | 12811646..12811886 | 957..717 | 1190 | 99.6 | Minus |
3L | 28110227 | 3L | 12812280..12812450 | 445..275 | 840 | 99.4 | Minus |
3L | 28110227 | 3L | 12812678..12812832 | 168..14 | 775 | 100 | Minus |
3L | 28110227 | 3L | 12812508..12812617 | 275..166 | 550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2380 | 866..834 | 113 | 85.3 | Minus |
BS05267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:25 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-PD | 2866..3819 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:23 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-PD | 2866..3819 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:54:26 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RC | 3110..4066 | 14..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:26 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RC | 3110..4066 | 14..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:26 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12812680..12812831 | 15..166 | 100 | -> | Minus |
3L | 12811648..12811886 | 717..955 | 99 | -> | Minus |
3L | 12811950..12812220 | 446..716 | 100 | -> | Minus |
3L | 12812280..12812450 | 275..445 | 99 | -> | Minus |
3L | 12812509..12812616 | 167..274 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:54:26 Download gff for
BS05267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12804748..12804986 | 717..955 | 99 | -> | Minus |
arm_3L | 12805050..12805320 | 446..716 | 100 | -> | Minus |
arm_3L | 12805380..12805550 | 275..445 | 99 | -> | Minus |
arm_3L | 12805609..12805716 | 167..274 | 100 | -> | Minus |
arm_3L | 12805780..12805931 | 15..166 | 100 | -> | Minus |
BS05267.5prime Sequence
829 bp (781 high quality bases) assembled on 2005-12-02
> BS05267.5prime
GAAGTTATCAGTCGACATGAGTGCGCCTAGTGAGGGTGGCGCGGGAGGAG
GGCCGGTGGGCGGTGGAAGTACAGCTACAGCGCCATCAGCGCACCCGGCG
GTGGCCGCCAAGATCACCCACGTGAAATCCGACGGCGGCGGTGGGATATC
CATTGCGGGCACACCGATCCTCAGCGGAGGCACAATTAAGGTGGCGTCAG
CCAATCAAGTTCAACAAACTTCCCTAGGTGGCACTCCAATTGCTCTGAAT
GCAGGACAAGCGACTACGGCAGCTTCGATCCGTGCTATTGGCGCTGGTGG
TCAGTCCACACAGGTGCGGGTGGTGATGCCAATGATCAAGCAGCTAGAGA
ATGTTACGGCCACCGGAAGGACTCAGATAACAGCCATACCAGCTGCACCG
GCGAGGAGTGGGGCGAATGCATCGATCACGGTTACCAGGCCCGTAACCCA
GGCCACATACTTGCCGCGAGCCAGTGTGACGGCCACCCAAATGGGAGGCG
TTGGCGTTGGAGTTGGCCAGCGGCTCGTCACGCCATTGAGAGCCACATCA
TCGGCCACGGTTACGCCCACAGCGCCAACAGTGCTGAGCTCAACCGGAGG
ATTCGTACGCGGAGCAACAGCATCGGTGAGCAGAAGTGGAGTGGCGCTCA
CATCGCAACCATCGTCGGCTGTCATCTCGTCCAGCAACAGTGGTGCTTGG
ATGCAGAGTCAGGGACAGGTGCAACTGATCCGAACCATTCATCAGCCGCG
CCAGCGAATTATAACGACATCCGCGGGGGTTTCGAATGCCAGTGTAGTGA
CCACTACTCCAGTGCAGGCGCCAACAGCT
BS05267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11006-PA | 3660 | CG11006-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG11006-PB | 3774 | CG11006-RB | 185..927 | 87..829 | 3715 | 100 | Plus |
CG11006-PC | 3885 | CG11006-RC | 296..1038 | 87..829 | 3715 | 100 | Plus |
CG11006-PD | 3819 | CG11006-RD | 230..972 | 87..829 | 3715 | 100 | Plus |
CG11006-PB | 3774 | CG11006-RB | 1..74 | 17..90 | 370 | 100 | Plus |
CG11006-PC | 3885 | CG11006-RC | 1..74 | 17..90 | 370 | 100 | Plus |
CG11006-PD | 3819 | CG11006-RD | 46..119 | 17..90 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap130-RA | 4045 | CG11006-RA | 179..991 | 17..829 | 4065 | 100 | Plus |
Sap130-RG | 4018 | CG11006-RG | 179..991 | 17..829 | 4065 | 100 | Plus |
Sap130-RF | 4015 | CG11006-RF | 179..991 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12807090..12807830 | 87..827 | 3705 | 100 | Plus |
3L | 28110227 | 3L | 12806265..12806337 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:00:57 has no hits.
BS05267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:26 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:24 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:28:53 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RF | 179..991 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:27 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RF | 179..991 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:27 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12806265..12806337 | 17..89 | 100 | -> | Plus |
3L | 12807093..12807832 | 90..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:28:53 Download gff for
BS05267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12799365..12799437 | 17..89 | 100 | -> | Plus |
arm_3L | 12800193..12800932 | 90..829 | 99 | | Plus |
BS05267.complete Sequence
3692 bp assembled on 2008-08-15
GenBank Submission: KX795829
> BS05267.complete
GAAGTTATCAGTCGACATGAGTGCGCCTAGTGAGGGTGGCGCGGGAGGAG
GGCCGGTGGGCGGTGGAAGTACAGCTACAGCGCCATCAGCGCACCCGGCG
GTGGCCGCCAAGATCACCCACGTGAAATCCGACGGCGGCGGTGGGATATC
CATTGCGGGCACACCGATCCTCAGCGGAGGCACAATTAAGGTGGCGTCAG
CCAATCAAGTTCAACAAACTTCCCTAGGTGGCACTCCAATTGCTCTGAAT
GCAGGACAAGCGACTACGGCAGCTTCGATCCGTGCTATTGGCGCTGGTGG
TCAGTCCACACAGGTGCGGGTGGTGATGCCAATGATCAAGCAGCTAGAGA
ATGTTACGGCCACCGGAAGGACTCAGATAACAGCCATACCAGCTGCACCG
GCGAGGAGTGGGGCGAATGCATCGATCACGGTTACCAGGCCCGTAACCCA
GGCCACATACTTGCCGCGAGCCAGTGTGACGGCCACCCAAATGGGAGGCG
TTGGCGTTGGAGTTGGCCAGCGGCTCGTCACGCCATTGAGAGCCACATCA
TCGGCCACGGTTACGCCCACAGCGCCAACAGTGCTGAGCTCAACCGGAGG
ATTCGTACGCGGAGCAACAGCATCGGTGAGCAGAAGTGGAGTGGCGCTCA
CATCGCAACCATCGTCGGCTGTCATCTCGTCCAGCAACAGTGGTGCTTGG
ATGCAGAGTCAGGGACAGGTGCAACTGATCCGAACCATTCATCAGCCGCG
CCAGCGAATTATAACGACATCCGCGGGGGTTTCGAATGCCAGTGTAGTGA
CCACTACTCCAGTGCAGGCGCCAACAGCTCTTTCCGTTTCCGCTGGCCAG
CCCTTGGCGACACAACAGGCGACGGGACCGGGAGGAGGTCCTCAGGCCTA
TGTGGCTACTGTATTGCCACAGAGGCAGCATCAGGCTACACTAGTTTACT
CCTCCAATGTGTCTGCACCGAATGCAAGTCAGAATCCGGGTCAGCAATTT
AATCCACGCTTTGCTGTGGCCACGCCCACAGGCGGAGTAACAACAACGAC
GCCCGGTGGAACGACAGTAACACCTCGACAGGTGCGACCAATTCCGCTGG
GCAAGAGTTTTCCAACCGCTAAGCTGAACACAACCAGCATAAGTATCAGG
GCACCAAGCATACCGCAGCTGAATACCAGCGTTACGGCATCTCCAACGGC
CGTTAGTGTTTCCGGTGGAGCAACAGTGGCACCCGGGCGGGGTCCCGGAG
CCGGAGGAACTGCTCTGACGGCCACTAATTTGCCCACCACACGGATCATT
CAGCTGCAGCAGCCAGCGACGGGAACCACTCAACAGATCATCGGATCCGG
AGCTCGTCTGGCCGGGAACGTGATGCTGCAGCCATTCTTGATGAGCACTA
CCGCGGCGGCTAAGATGGGCATTCGTCCACCTGTCACCATGACCGCTAAG
GTTCAGCCATCGCTAACTATTACACAGCTTAATCCCATCGGAAAACTGTC
AGCTGGCGGAGGAAGTGGAGGACAAACAATGGGGCCGCAGGGCGTGGCCA
GCATCCAGGCGGTGCCAGTGCCGAATGTCTCTGCCAGTGTGGTCAATTCA
AGCTCGGTGACGGGTGCCACATCGGCGGCCGGTGGAGCCACTGTCCTGCC
ACTTACCATCAGTGGCAGGGGAGCGGGAGTGGGACCAGGCGGTAATATCC
TCACGGGAACTCTGACGCCCATCAAGAACGCAAGCGGCATCACTTTGGGC
AAGATGATGATGGCACCAGCTTCTTCTGCCCCTGGAGCAGATGGTTCCAG
CACAAGCGGGGCAACAGTGACGGGCTTTCAACGCACCTGGAATCCTGTAG
TTGCTTCACAGAGCCAGTTGATGAAGATCGATGAGAAGGGAAGTGCTGCC
ACAATCTACTACGAATCTATGCCAGCCTCCGCCTCCACAGGCGTTCTATC
ATTGACTACGACAACAGTGACGCAGAGCACCCAGGCGCAGGCACAATTGG
TTAGCAGCGCCGGTGGCAGCTTGTCGGTATCTTCGTTACCCTTTGCAAGT
CACGCGACTGCCGGAGCGGGATCAGGTGGCGGCGGATCGCAGGCTACTTT
TACGGTGTTGCCGTCGGGGGCTGGTGGAACAGCCACCCGAACCATTGGCC
ACCAGCAATTGATAATACCAGCAGGACCAAATAGTGCGCCGCCGCAGCAC
ATGGTTATTCCGCTGCATACGTCCGTTAAGGTGACCACGGGAGCGGGCAA
TCCGCAACAAGCAACTGCAAGTGGAGCACTGGTGTCCAGCTTTATGCGCA
AGCGGGATGCGGAAGGTTCGCCAATACGGGCGGCTAAAAATCTAGGACCC
ACTTTGCTTTCAATGGCTAGCAATAACAGTGGACAAAACATGCCACCGGC
TCCGGGCACCACGTTCAACATTCAGCCGGTGTCCGTGACAGTGCCTCAAT
CAGTTGGCTCTGGGCTGACCGTAGAGGCGCTGGCCAAGAAGGAACGGGAG
CGAGTCACCCATGGTGTAGCAAGTAGCGCCGCTAGTGTGCCTGCCACAGT
TGGCCCCGTGAACTCAACGAGAAATTCGAGGGCGGACTCGCCGGCTTCGT
CGGACGGCTCAACTACAGTGTCGGCGAATTCCTCACCTGGTGTGGATCAG
CAATTACAGGACAGGATTGGCGATCAGCCAGCCACGGGAGGCGCTGGTGG
GCGCGATAATTCCACGCATTTTAATCCCATTAATGAGATGTACTCATCAC
ACCAATCGATTCAGCAGAACCTTGGTCACTCCTCACTGGGAGCCCGCAGT
GGTAGCAGTGCCTTTGTGGATGTGCAAGCACCAACGCCGCAGCAACAGCA
GCCTCAGCAGGTGCCTCATTTGGTGGGATCGACGCAGATGCAACAAGGAA
CGCGTATGAATGGTACTGGTAATAGCTCCAGCTCCAGTTATGACTGCTCC
TCTAGGAAAAAGCCGCGACGATCGACCAATGACAGCCAGCACTCTACGCA
GAGTCAAGCATCCTTATCGCTGCCACCTCCAAGTTCGGAGCCAACGCCGC
CGGCTGGCGCTTCGTACATGCAGAAGCACAACAATGGAGGACTACTGGTG
ACAGCAGCGACCCCGGGTGTTGCTCCCAACAGTGCGCCAGGCGATGCCAA
CCACCGGAACAGTACACCTGCTGTGGCGGGCAACAAGGAGAACGCAAATC
CCGTCGACTTTGTGATTCGTCGTCCGCGCAATTGTGCTTTGCTCAATACG
TATAAGCCCACACATAAGTTGGCCAACAATCATTTTCATCGGTACACTGA
TGTTAAGCCAAGGGAGGAGCGGCGGGCCACAGTCATTGATTTGGCCAATC
AGCCAAATGTGCAGGGCAAAATCAATGGATGGAAAATTTATCATTTACGC
TCGCAAATGGAGGACTTGAATGAATCGGAAGTCTTTAGTCTGGGCAGGCT
GGAGACCATGCTGCAGGATCTCGAAAAGGACAAGGAGAAGCACAGCGAAA
TTGAGCGAGTCACTGAACTGCTAAAGGGAAACATTCAACGCAGCAAGATT
ATTACCGATGGCATCAACGAGGCACAGAATCAGTTAATGAAGATCTTCGA
GCATAAGCCACACGTTTCTAATATAATCACCCGCTGCGCTTCGAAAAGGA
ATTTCAAGAAGCGCGAAAAGATCTAAAAGCTTTCTAGACCAT
BS05267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap130-RA | 3660 | CG11006-PA | 1..3660 | 17..3676 | 18285 | 100 | Plus |
Sap130-RB | 3774 | CG11006-PB | 185..3774 | 87..3676 | 17935 | 100 | Plus |
Sap130-RE | 3774 | CG11006-PE | 185..3774 | 87..3676 | 17935 | 100 | Plus |
Sap130-RB | 3774 | CG11006-PB | 1..74 | 17..90 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap130-RA | 4045 | CG11006-RA | 179..3841 | 17..3679 | 18300 | 100 | Plus |
Sap130-RB | 4159 | CG11006-RB | 363..3955 | 87..3679 | 17950 | 100 | Plus |
Sap130-RE | 4060 | CG11006-RE | 264..3856 | 87..3679 | 17950 | 100 | Plus |
Sap130-RB | 4159 | CG11006-RB | 179..252 | 17..90 | 370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12810726..12811592 | 1875..2741 | 4320 | 99.9 | Plus |
3L | 28110227 | 3L | 12807090..12807830 | 87..827 | 3705 | 100 | Plus |
3L | 28110227 | 3L | 12807884..12808477 | 826..1419 | 2970 | 100 | Plus |
3L | 28110227 | 3L | 12810205..12810663 | 1418..1876 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 12811950..12812220 | 2977..3247 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 12811646..12811886 | 2736..2976 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 12812280..12812450 | 3248..3418 | 840 | 99.4 | Plus |
3L | 28110227 | 3L | 12812678..12812832 | 3525..3679 | 775 | 100 | Plus |
3L | 28110227 | 3L | 12812508..12812617 | 3418..3527 | 550 | 100 | Plus |
3L | 28110227 | 3L | 12806265..12806337 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:55:57 has no hits.
BS05267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:54 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-RE | 80..155 | 17..94 | 97 | <- | Plus |
CG11006-RE | 272..3856 | 95..3679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:37 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RA | 179..3836 | 17..3674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:36 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11006-RE | 80..155 | 17..94 | 97 | <- | Plus |
CG11006-RE | 272..3851 | 95..3674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:05 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sap130-RA | 179..3836 | 17..3674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:05 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12811950..12812220 | 2977..3247 | 100 | -> | Plus |
3L | 12812280..12812450 | 3248..3418 | 99 | -> | Plus |
3L | 12812509..12812616 | 3419..3526 | 100 | -> | Plus |
3L | 12812680..12812827 | 3527..3674 | 100 | | Plus |
3L | 12810728..12811588 | 1877..2737 | 100 | -> | Plus |
3L | 12811648..12811886 | 2738..2976 | 100 | -> | Plus |
3L | 12806265..12806337 | 17..89 | 100 | -> | Plus |
3L | 12807093..12807830 | 90..827 | 100 | -> | Plus |
3L | 12807886..12808476 | 828..1418 | 100 | -> | Plus |
3L | 12810206..12810663 | 1419..1876 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:37 Download gff for
BS05267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12799365..12799437 | 17..89 | 100 | -> | Plus |
arm_3L | 12800193..12800930 | 90..827 | 100 | -> | Plus |
arm_3L | 12800986..12801576 | 828..1418 | 100 | -> | Plus |
arm_3L | 12803306..12803763 | 1419..1876 | 100 | -> | Plus |
arm_3L | 12803828..12804688 | 1877..2737 | 100 | -> | Plus |
arm_3L | 12804748..12804986 | 2738..2976 | 100 | -> | Plus |
arm_3L | 12805050..12805320 | 2977..3247 | 100 | -> | Plus |
arm_3L | 12805380..12805550 | 3248..3418 | 99 | -> | Plus |
arm_3L | 12805609..12805716 | 3419..3526 | 100 | -> | Plus |
arm_3L | 12805780..12805927 | 3527..3674 | 100 | | Plus |
BS05267.pep Sequence
Translation from 16 to 3675
> BS05267.pep
MSAPSEGGAGGGPVGGGSTATAPSAHPAVAAKITHVKSDGGGGISIAGTP
ILSGGTIKVASANQVQQTSLGGTPIALNAGQATTAASIRAIGAGGQSTQV
RVVMPMIKQLENVTATGRTQITAIPAAPARSGANASITVTRPVTQATYLP
RASVTATQMGGVGVGVGQRLVTPLRATSSATVTPTAPTVLSSTGGFVRGA
TASVSRSGVALTSQPSSAVISSSNSGAWMQSQGQVQLIRTIHQPRQRIIT
TSAGVSNASVVTTTPVQAPTALSVSAGQPLATQQATGPGGGPQAYVATVL
PQRQHQATLVYSSNVSAPNASQNPGQQFNPRFAVATPTGGVTTTTPGGTT
VTPRQVRPIPLGKSFPTAKLNTTSISIRAPSIPQLNTSVTASPTAVSVSG
GATVAPGRGPGAGGTALTATNLPTTRIIQLQQPATGTTQQIIGSGARLAG
NVMLQPFLMSTTAAAKMGIRPPVTMTAKVQPSLTITQLNPIGKLSAGGGS
GGQTMGPQGVASIQAVPVPNVSASVVNSSSVTGATSAAGGATVLPLTISG
RGAGVGPGGNILTGTLTPIKNASGITLGKMMMAPASSAPGADGSSTSGAT
VTGFQRTWNPVVASQSQLMKIDEKGSAATIYYESMPASASTGVLSLTTTT
VTQSTQAQAQLVSSAGGSLSVSSLPFASHATAGAGSGGGGSQATFTVLPS
GAGGTATRTIGHQQLIIPAGPNSAPPQHMVIPLHTSVKVTTGAGNPQQAT
ASGALVSSFMRKRDAEGSPIRAAKNLGPTLLSMASNNSGQNMPPAPGTTF
NIQPVSVTVPQSVGSGLTVEALAKKERERVTHGVASSAASVPATVGPVNS
TRNSRADSPASSDGSTTVSANSSPGVDQQLQDRIGDQPATGGAGGRDNST
HFNPINEMYSSHQSIQQNLGHSSLGARSGSSAFVDVQAPTPQQQQPQQVP
HLVGSTQMQQGTRMNGTGNSSSSSYDCSSRKKPRRSTNDSQHSTQSQASL
SLPPPSSEPTPPAGASYMQKHNNGGLLVTAATPGVAPNSAPGDANHRNST
PAVAGNKENANPVDFVIRRPRNCALLNTYKPTHKLANNHFHRYTDVKPRE
ERRATVIDLANQPNVQGKINGWKIYHLRSQMEDLNESEVFSLGRLETMLQ
DLEKDKEKHSEIERVTELLKGNIQRSKIITDGINEAQNQLMKIFEHKPHV
SNIITRCASKRNFKKREKI*
BS05267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sap130-PA | 1219 | CG11006-PA | 1..1219 | 1..1219 | 6140 | 100 | Plus |
Sap130-PB | 1257 | CG11006-PB | 1..1257 | 1..1219 | 6091 | 97 | Plus |
Sap130-PE | 1257 | CG11006-PE | 1..1257 | 1..1219 | 6091 | 97 | Plus |
Sap130-PG | 1210 | CG11006-PG | 1..1210 | 1..1219 | 6074 | 99.3 | Plus |
Sap130-PF | 1209 | CG11006-PF | 1..1209 | 1..1219 | 6068 | 99.2 | Plus |