Clone Sequence Records
BS05270.3prime Sequence
882 bp (874 high quality bases) assembled on 2005-12-02
> BS05270.3prime
ATGGTCTAGAAAGCTTTCATTTGCCAATGTCCAGTTTGGCGGCCAGTAGC
TTGGCTCCGGGCGTCTTACGGTCCGCGAGTATCTGGCTAAGGCTCCTCTC
CGCCGCGATGGCTTTCTTGCAGTCGTCCAGCAGTGCGGGACACTCCTCCA
CCAGCTTGAGCAGGACAAAACAGGCCCGGTTGACGCCCAGCCAGGCTTTC
AGCACATCGGAGGACAAGTTTTGGAGTAGCTGTTGGCTGAACGGGGTGCC
CTCTCGCTTGCCATCGTTCTTGAGTATCTTCTTCAATACAATGTGCATGC
CGGCCTCCTCGATTCCGGAGACCAACGGAGCCGCCGGCTCCTCCTCCTTT
GCCTTTGGCTTTTTGGGCTCCTTTTTGGCTTTCTTCACCTTGGGTTCGGC
ATCATCTGCGGCCGCCTCCTTCTGCTCCTTCTCGTCTCCTTCATCGTCGC
TCTCCTCATCTTCATCTTCATCTTCATCTTCGTCGTCGCTGCTGCTCTCG
ACATAAAGCAGTTTTCTGCGCTGTTTGGTGGCCTGGGCTATAATGGCCTC
CACGTCATTGTGAGGCTTCTTCTTATCCTGCGGCTGCGGACCGGCGGCGT
CTGCTGAAATGCGCCACTCCGGTTGGACGACGACTTGGGCAAGGGCCGAA
GCAGCCTTCTCATAGGACTCGCCTTGAATGTGATTAAGAATATCGCCGGT
GACCAGGCCGATGTGGCTGTTGGACAGCCAAAAGGCGGCATCCTCGGCGA
TGGACTGTGCAATCGGCGCCTCTATCTGCTCAAGGATCTCCTTGCGACGC
AGCTCCTTCTCCTTTTTTCCAAGGCTAGACCCTCCTCCACCGTGCGAATG
AACTCTGGATGGAAGCATGTCGTATCACCCGG
BS05270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1685-PA | 2214 | pen-RA | 1409..2214 | 822..17 | 4030 | 100 | Minus |
| CG1685-PA | 2214 | pen-RA | 1348..1409 | 882..821 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-RA | 2367 | CG1685-RA | 1440..2306 | 882..17 | 4310 | 99.9 | Minus |
| dod-RA | 1021 | CG17051-RA | 727..913 | 17..203 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21346957..21347432 | 203..678 | 2380 | 100 | Plus |
| X | 23542271 | X | 21347531..21347735 | 679..882 | 975 | 99.5 | Plus |
| X | 23542271 | X | 21346564..21346750 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 12:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 1714..1758 | 504..460 | 108 | 71.1 | Minus |
BS05270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:31 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-PA | 1348..2214 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:31 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1685-PA | 1348..2214 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:49:47 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 1440..2319 | 6..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:11 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 1440..2319 | 6..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:11 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21346551..21346749 | 6..202 | 97 | <- | Plus |
| X | 21346957..21347432 | 203..678 | 100 | <- | Plus |
| X | 21347531..21347735 | 679..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:49:47 Download gff for
BS05270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21217578..21217776 | 6..202 | 97 | <- | Plus |
| arm_X | 21217984..21218459 | 203..678 | 100 | <- | Plus |
| arm_X | 21218558..21218762 | 679..882 | 99 | | Plus |
BS05270.5prime Sequence
924 bp (799 high quality bases) assembled on 2005-12-02
> BS05270.5prime
GAAGTTATCAGTCGACATGGTTAGCTCGGAGCCGAAAGGACCTGCTAACG
TGGCCAACACGGCCTCGCCCCTCAAGGCCCATGAATCGTCCGGCAAGCGC
GCCAACGGACAGAAGTTTAAGCCCGGTGGAGCAGGAGGCGCCAGGAAGTT
CGACAAATTCGGCGGAGGAGCAGGCAAGTCGTTTGTAAAGCCAGGCGCTG
GTGGTGCCAAGAAGTTCGACAAGTCTGGGCCCGGTGGCTTCAAGAAGTTT
GACAAATCCGGAGCCACCGGCGACAAGAGGCTTGGTGGCAACAAGTTCCG
CGGAAAACCACAAACACAGCCACAGGCGCCGGCGGAGGGCGAGAAACAGG
ACTGGAACAAGTTCAAGAAGGAGAAGAAGGACCTCAAGCTGAAGCGCAAG
AGTGCCAAGGACACCTACGAGATCAGCAAGGAGGCCAACCAGATCCACGA
GAAGTTGCGATGCCGCCGAACGGAGAACAAGGACAAGCTGGTGGAGCAGA
TATACAAGGTGCTCAACGTGGGCGACACTATTTCAAAGGTGGTGAAGGCC
CACGACACCGCCCGCGTGATCCAGAGCATGCTAAAGTACGCGTCGCCAGC
TCTGCGGGCCGAGATCTCTGAGAAGCTGCTTCCCTTCACCGTGGAGATGT
GCCAGTCGAAATACGCCCAGTTCTGCGTGCAACGGATGCTCAAGTACGGT
GCGCCAGCCACCAAAGCCAAGCTGGTGGACAGCCTGTACGGACATATAGT
GCGTTTGGCCGGACACAGCATCGGCAGTGGGCTGCTGGATTCGATGTATC
AGAGCGCCACACCCAATCAGCGCATCTATATGCGCCAGGAGTTCTACGGC
GATCTGTACCGGAAGGCCAAGGATTCGAATGTGAAGACTCTGAACGACAC
CTATAAGGAGGCCACGAACATGAA
BS05270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1685-PA | 2214 | pen-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-RA | 2367 | CG1685-RA | 93..1000 | 17..924 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21348243..21348705 | 924..462 | 2300 | 99.8 | Minus |
| X | 23542271 | X | 21349306..21349751 | 462..17 | 2230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:33 has no hits.
BS05270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:32 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:32 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1685-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:32 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 85..1000 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:27 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 85..1000 | 9..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:27 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21348243..21348704 | 463..924 | 99 | <- | Minus |
| X | 21349306..21349759 | 9..462 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:32 Download gff for
BS05270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21219270..21219731 | 463..924 | 99 | <- | Minus |
| arm_X | 21220333..21220786 | 9..462 | 99 | | Minus |
BS05270.complete Sequence
2246 bp assembled on 2008-08-14
GenBank Submission: FJ635090
> BS05270.complete
GAAGTTATCAGTCGACATGGTTAGCTCGGAGCCGAAAGGACCTGCTAACG
TGGCCAACACGGCCTCGCCCCTCAAGGCCCATGAATCGTCCGGCAAGCGC
GCCAACGGACAGAAGTTTAAGCCCGGTGGAGCAGGAGGCGCCAGGAAGTT
CGACAAATTCGGCGGAGGAGCAGGCAAGTCGTTTGTAAAGCCAGGCGCTG
GTGGTGCCAAGAAGTTCGACAAGTCTGGGCCCGGTGGCTTCAAGAAGTTT
GACAAATCCGGAGCCACCGGCGACAAGAGGCTTGGTGGCAACAAGTTCCG
CGGAAAACCACAAACACAGCCACAGGCGCCGGCGGAGGGCGAGAAACAGG
ACTGGAACAAGTTCAAGAAGGAGAAGAAGGACCTCAAGCTGAAGCGCAAG
AGTGCCAAGGACACCTACGAGATCAGCAAGGAGGCCAACCAGATCCACGA
GAAGTTGCGATGCCGCCGAACGGAGAACAAGGACAAGCTGGTGGAGCAGA
TATACAAGGTGCTCAACGTGGGCGACACTATTTCAAAGGTGGTGAAGGCC
CACGACACCGCCCGCGTGATCCAGAGCATGCTAAAGTACGCGTCGCCAGC
TCTGCGGGCCGAGATCTCTGAGAAGCTGCTTCCCTTCACCGTGGAGATGT
GCCAGTCGAAATACGCCCAGTTCTGCGTGCAACGGATGCTCAAGTACGGT
GCGCCAGCCACCAAAGCCAAGCTGGTGGACAGCCTGTACGGACATATAGT
GCGTTTGGCCGGACACAGCATCGGCAGTGGGCTGCTGGATTCGATGTATC
AGAGCGCCACACCCAATCAGCGCATCTATATGCGCCAGGAGTTCTACGGC
GATCTGTACCGGAAGGCCAAGGATTCGAATGTGAAGACTCTGAGCGACAC
CTATAAGGAGGCCACGAACATGAAGGCCTCCATTTTGGGGTCGGTTAAAG
CAAACCTGGATCATGTGGCCAACAAGCAGCTGGTGGACAGTGCGCTGGTG
CACGCCGTGATGCTGGAGTACCTGCGCGCCTGCGACGAAGATGAGGAGAA
GCTGGAGGAGACGGTCACTGCGTTTGCGGCTCTAGTGCCTCACATGCTGT
CCACCAAGGAGGGCAGCGAGGCGGCTGTTATATGCTTCTACAAGTCGACG
CCCAAGAATCGCAGAGCCATTATCAAGAATATCAAGGAGCACCTGCTAAA
GATCGCCAACCATGAGCACGGCCACGTGTTCCTCATCTCGCTGCTAAACG
CACTGGACGACACTAAGGCGACCAAGAAGGCAATTTACGATCACCTACAC
GGAGATCTAAAGGCGCTAATGAGCAGCCCGTACGGCCGACGAGTGATTCA
ATGGCTGGTGGCTCCGGGTGATACGACATGCTTCCATCCAGAGTTCATTC
GCACGGTGGAGGAGGGTCTAGCCTTTGGAAAAAAGGAGAAGGAGCTGCGT
CGCAAGGAGATCCTTGAGCAGATAGAGGCGCCGATTGCACAGTCCATCGC
CGAGGATGCCGCCTTTTGGCTGTCCAACAGCCACATCGGCCTGGTCACCG
GCGATATTCTTAATCACATTCAAGGCGAGTCCTATGAGAAGGCTGCTTCG
GCCCTTGCCCAAGTCGTCGTCCAACCGGAGTGGCGCATTTCAGCAGACGC
CGCCGGTCCGCAGCCGCAGGATAAGAAGAAGCCTCACAATGACGTGGAGG
CCATTATAGCCCAGGCCACCAAACAGCGCAGAAAACTGCTTTATGTCGAG
AGCAGCAGCGACGACGAAGATGAAGATGAAGATGAAGATGAGGAGAGCGA
CGATGAAGGAGACGAGAAGGAGCAGAAGGAGGCGGCCGCAGATGATGCCG
AACCCAAGGTGAAGAAAGCCAAAAAGGAGCCCAAAAAGCCAAAGGCAAAG
GAGGAGGAGCCGGCGGCTCCGTTGGTCTCCGGAATCGAGGAGGCCGGCAT
GCACATTGTATTGAAGAAGATACTCAAGAACGATGGCAAGCGAGAGGGCA
CCCCGTTCAGCCAACAGCTACTCCAAAACTTGTCCTCCGATGTGCTGAAA
GCCTGGCTGGGCGTCAACCGGGCCTGTTTTGTCCTGCTCAAGCTGGTGGA
GGAGTGTCCCGCACTGCTGGACGACTGCAAGAAAGCCATCGCGGCGGAGA
GGAGCCTTAGCCAGATACTCGCGGACCGTAAGACGCCCGGAGCCAAGCTA
CTGGCCGCCAAACTGGACATTGGCAAATGAAAGCTTTCTAGACCAT
BS05270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-RA | 2214 | CG1685-PA | 1..2214 | 17..2230 | 11070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-RA | 2367 | CG1685-RA | 93..2306 | 17..2230 | 11070 | 100 | Plus |
| dod-RA | 1021 | CG17051-RA | 727..913 | 2230..2044 | 935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21348001..21348705 | 1166..462 | 3525 | 100 | Minus |
| X | 23542271 | X | 21346957..21347432 | 2044..1569 | 2380 | 100 | Minus |
| X | 23542271 | X | 21349306..21349751 | 462..17 | 2230 | 100 | Minus |
| X | 23542271 | X | 21347531..21347933 | 1568..1166 | 2015 | 100 | Minus |
| X | 23542271 | X | 21346564..21346750 | 2230..2044 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:51 has no hits.
BS05270.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:39 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 81..2315 | 9..2241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:42 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 93..2305 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:58 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 89..2301 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:16 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-RA | 93..2305 | 17..2229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:16 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21346565..21346749 | 2045..2229 | 100 | <- | Minus |
| X | 21346957..21347432 | 1569..2044 | 100 | <- | Minus |
| X | 21347531..21347933 | 1166..1568 | 100 | <- | Minus |
| X | 21348002..21348704 | 463..1165 | 100 | <- | Minus |
| X | 21349306..21349751 | 17..462 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:42 Download gff for
BS05270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21217592..21217776 | 2045..2229 | 100 | <- | Minus |
| arm_X | 21217984..21218459 | 1569..2044 | 100 | <- | Minus |
| arm_X | 21218558..21218960 | 1166..1568 | 100 | <- | Minus |
| arm_X | 21219029..21219731 | 463..1165 | 100 | <- | Minus |
| arm_X | 21220333..21220778 | 17..462 | 100 | | Minus |
BS05270.pep Sequence
Translation from 16 to 2229
> BS05270.pep
MVSSEPKGPANVANTASPLKAHESSGKRANGQKFKPGGAGGARKFDKFGG
GAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKRLGGNKFRGKPQT
QPQAPAEGEKQDWNKFKKEKKDLKLKRKSAKDTYEISKEANQIHEKLRCR
RTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEI
SEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGH
SIGSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSNVKTLSDTYKEAT
NMKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEETV
TAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHE
HGHVFLISLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAP
GDTTCFHPEFIRTVEEGLAFGKKEKELRRKEILEQIEAPIAQSIAEDAAF
WLSNSHIGLVTGDILNHIQGESYEKAASALAQVVVQPEWRISADAAGPQP
QDKKKPHNDVEAIIAQATKQRRKLLYVESSSDDEDEDEDEDEESDDEGDE
KEQKEAAADDAEPKVKKAKKEPKKPKAKEEEPAAPLVSGIEEAGMHIVLK
KILKNDGKREGTPFSQQLLQNLSSDVLKAWLGVNRACFVLLKLVEECPAL
LDDCKKAIAAERSLSQILADRKTPGAKLLAAKLDIGK*
BS05270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-PA | 737 | CG1685-PA | 1..737 | 1..737 | 3777 | 100 | Plus |
