Clone Sequence Records
BS05271.3prime Sequence
913 bp (812 high quality bases) assembled on 2005-12-02
> BS05271.3prime
ATGGTCTAGAAAGCTTTCAGATGTCGTTGTTTAGGGAGCTAGCCATCTCG
AGCTCCAGGCGAAGGCCAATGTTCACGCACATATACATGGACTCCGGATC
CTCGCGGATGAATACGTTTACCAGAGGCTTACCACCATCCATGGCCACAA
CCTTCAGGAGAGCTTCGGTGCGCCAAGGTATCAGACCACGCAGGCGATGA
AGCATATGACCTCCGATCTCTGGAACGTCGTGCAGGCGAACGGGTATCGC
CTGTGGCGGGAACGTAGCCAGAGCTCTGTTGTTTGCCTCCAGGCGGTAGA
TATTAGAGATGTGCGCCTTACGCTGCCGTCCATCGTCCACGTAGTAGACA
TCGAAGGACTCTTCGTCCGGATTCAGTGGTCTGGTGACCAGTCGCCCGCG
GAACCACTGCTTGACGCCATCGACAGTCTCGTCGCACACGAATATATGGC
GGTCGTGGAGCAGATCCGAATAGCTCACTCGGTCCTGCTCGCCCAAATCA
GCCACAGTTTGCGCAATACTGCGCTCCACAAACTTAAGGTCATCATTGCG
TAGCAGCACCATTAGATCACCATCATCGTTGATGTGAGACACAAGAATGG
GCGTGGTCTTGCCGATCTTCTTTTCATCACTCAGCGATGGTGCCGGCGTG
CACTTCGTTATTCTTTTCGCAACCAGATCGTTCAGATGAATGTCCTCAGC
CGTTGAGGTGTCGTACAGCGTGGCCACCAAGCACGCCCGACGCTTACCGT
TCTCCACCACACCCTGGGCAGATCCACCCAGTTCCAGGAACTGCTTCTCC
GTGGTGAGCACATGGGCCACAACCGTCTGGCCGTCCAGCTCCTTTGTTAA
AACCTGCAGAGCGTGCGGATGATCCTCGAACTTATCCAACGCATACATGC
TGAGGCACACGGC
BS05271.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-PA | 2640 | CG8920-RA | 1744..2640 | 913..17 | 4485 | 100 | Minus |
| CG8920-PB | 3669 | CG8920-RB | 2002..2880 | 913..35 | 4395 | 100 | Minus |
| CG8920-PC | 3669 | CG8920-RC | 2002..2880 | 913..35 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 2178..3075 | 913..16 | 4490 | 100 | Minus |
| CG8920-RA | 3079 | CG8920-RA | 1985..2882 | 913..16 | 4490 | 100 | Minus |
| CG8920-RF | 3753 | CG8920-RF | 1926..2804 | 913..35 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20323469..20324224 | 913..158 | 3780 | 100 | Minus |
| 2R | 25286936 | 2R | 20324293..20324411 | 157..39 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:24:41 has no hits.
BS05271.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:33 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-PA | 1744..2640 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:34 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-PA | 1744..2640 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:33:50 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 1985..2884 | 11..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:49:53 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 1985..2884 | 11..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:49:53 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20323469..20324224 | 158..913 | 100 | -> | Minus |
| 2R | 20324293..20324411 | 39..157 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:33:50 Download gff for
BS05271.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16210974..16211729 | 158..913 | 100 | -> | Minus |
| arm_2R | 16211798..16211916 | 39..157 | 100 | -> | Minus |
BS05271.5prime Sequence
838 bp (786 high quality bases) assembled on 2005-12-02
> BS05271.5prime
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGT
BS05271.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-PB | 3669 | CG8920-RB | 259..1080 | 17..838 | 4110 | 100 | Plus |
| CG8920-PA | 2640 | CG8920-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG8920-PC | 3669 | CG8920-RC | 259..1080 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 435..1256 | 17..838 | 4110 | 100 | Plus |
| CG8920-RF | 3753 | CG8920-RF | 183..1004 | 17..838 | 4110 | 100 | Plus |
| CG8920-RA | 3079 | CG8920-RA | 242..1063 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321726..20322547 | 17..838 | 4110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:04:14 has no hits.
BS05271.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:35 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:35 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-PC | 256..1080 | 13..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:45:24 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 239..1063 | 13..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:52:20 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 239..1063 | 13..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:52:20 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20321723..20322547 | 13..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:45:24 Download gff for
BS05271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16209228..16210052 | 13..838 | 99 | | Plus |
BS05271.complete Sequence
2672 bp assembled on 2009-12-07
GenBank Submission: KX795422
> BS05271.complete
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAATTCGATCC
CTCACTTGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGCAAATGACT
TTGAGAAACCTGCATACAACATATTCAACAAGCTACGGAACCTACATTGT
TCAGTGCAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAGGAGTTCAC
CGATAAGGAGACAGCATACCAACGCACAGCACAGATCGCCATCCAGCGCA
TCATGCATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACATTTAGCGAT
GTGGAGTTTATCGATGGATTGTACAAGGAGCTGTTAAAGCACCCACATGG
CATATTGGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTTCCGGCAAC
ATCTGCCCAGTCATTGGTACGATTTGATCGTGAAGTCAAATAAAATTCGT
GTTGAGCACGGCATTGATCCAAGGATCATATTGTTTGCCAACGATCCTGG
TTCATCGGAGCCGGACCGCACCAGCATAACCACCCTGCCACAGATGGTGC
TGCCGTGGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACATGTTCATC
AGCTTCTGCGACTCCACCAAGATAGTGTGGGCTCGGATGATCGATCAGAT
CGCAAACTTTGAGGAACTGACGAAGCATATTGGACGCCAAATGGAGTCTC
CGCATTTCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAGTCTATTTA
GTGGAGATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCTGTGGATGA
GGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGATGTGGCAA
TGTTTCATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCTTGGCGCTC
CCGGCCCAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAGTTCGAGGA
TCATCCGCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGGCCAGACGG
TTGTGGCCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAACTGGGTGGA
TCTGCCCAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGCTTGGTGGC
CACGCTGTACGACACCTCAACGGCTGAGGACATTCATCTGAACGATCTGG
TTGCGAAAAGAATAACGAAGTGCACGCCGGCACCATCGCTGAGTGATGAA
AAGAAGATCGGCAAGACCACGCCCATTCTTGTGTCTCACATCAACGATGA
TGGTGATCTAATGGTGCTGCTACGCAATGATGACCTTAAGTTTGTGGAGC
GCAGTATTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACCGAGTGAGC
TATTCGGATCTGCTCCACGACCGCCATATATTCGTGTGCGACGAGACTGT
CGATGGCGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAGACCACTGA
ATCCGGACGAAGAGTCCTTCGATGTCTACTACGTGGACGATGGACGGCAG
CGTAAGGCGCACATCTCTAATATCTACCGCCTGGAGGCAAACAACAGAGC
TCTGGCTACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCACGACGTTC
CAGAGATCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGATACCTTGG
CGCACCGAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGTAAGCCTCT
GGTAAACGTATTCATCCGCGAGGATCCGGAGTCCATGTATATGTGCGTGA
ACATTGGCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCCTAAACAACGAC
ATCTGAAAGCTTTCTAGACCAT
BS05271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 2898 | CG8920-PD | 259..2898 | 17..2656 | 13200 | 100 | Plus |
| CG8920-RA | 2640 | CG8920-PA | 1..2640 | 17..2656 | 13200 | 100 | Plus |
| CG8920-RF | 3411 | CG8920-PF | 1..2622 | 17..2638 | 13110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-RD | 3272 | CG8920-RD | 435..3075 | 17..2657 | 13205 | 100 | Plus |
| CG8920-RA | 3079 | CG8920-RA | 242..2882 | 17..2657 | 13205 | 100 | Plus |
| CG8920-RF | 3753 | CG8920-RF | 183..2804 | 17..2638 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20321726..20324224 | 17..2515 | 12495 | 100 | Plus |
| 2R | 25286936 | 2R | 20324293..20324411 | 2516..2634 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:05:04 has no hits.
BS05271.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:25 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 241..2879 | 17..2655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:29 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 242..2880 | 17..2655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:18 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 241..2879 | 17..2655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:39 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8920-RA | 242..2880 | 17..2655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:39 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20321726..20324224 | 17..2515 | 100 | -> | Plus |
| 2R | 20324293..20324411 | 2516..2634 | 100 | -> | Plus |
| 2R | 20324498..20324518 | 2635..2655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:29 Download gff for
BS05271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16209231..16211729 | 17..2515 | 100 | -> | Plus |
| arm_2R | 16211798..16211916 | 2516..2634 | 100 | -> | Plus |
| arm_2R | 16212003..16212023 | 2635..2655 | 100 | | Plus |
BS05271.pep Sequence
Translation from 16 to 2655
> BS05271.pep
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSLNNDI*
BS05271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8920-PD | 965 | CG8920-PD | 87..965 | 1..879 | 4654 | 100 | Plus |
| CG8920-PA | 879 | CG8920-PA | 1..879 | 1..879 | 4654 | 100 | Plus |
| CG8920-PF | 1136 | CG8920-PF | 1..876 | 1..876 | 4631 | 99.8 | Plus |
| CG8920-PB | 1222 | CG8920-PB | 87..962 | 1..876 | 4631 | 99.8 | Plus |
