Clone BS05272 Report

Search the DGRC for BS05272

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9634-RA
Protein status:BS05272.pep: full length peptide match
Sequenced Size:2672

Clone Sequence Records

BS05272.complete Sequence

2672 bp assembled on 2009-12-07

GenBank Submission: KX795136

> BS05272.complete
GAAGTTATCAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAA
TCTGCGCCATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGC
CAGGACGAGATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGA
AACGGCTCCACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTT
CACATCTGACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAAC
GAGGTCGCTGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACC
CAACTCCACGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAG
GCCGACGATCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATC
CTGTACGTAACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCAT
CCTGCTGCTGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGC
TCTGCCTGGATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGG
GCCAACACCTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGG
CAATTTTGCCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCG
GCGAGTGGAACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTG
AATCGATTTATTGCAATGCTGCCAAATTCGCAAGAGGGTTCCGTGGAGTC
CACGGTGAGCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACA
AGAGCCAGTCGGATCTGCTCCTGAAACGGGCCATTAATGCAGTGTATGGC
TGGCAGGCATTCCGCGACTCCAATCGACTGCAATCCTGGGAATACAAGCG
GGTTCTGGTCGTCCTACAGGCCAAACATGGCATATTTCCTTACTACCGCG
TCACCGTGGAGAACGGCTTTAGTAATCCCCACGACTATGTGATCACCCTG
GACGAGGGCGAACTTGGTCTGCCGGACAAGTACTTCTATGGCAACGATGC
TGACGAGGAAGTGGTTCGTGGCTATAAGCTGCTCCTCCGGGACTTTGCCA
TCAATATGGGAATCGTTTCACGGGAAGCGGATCTATTTGCCGACGATATT
TTCCACTATGAACGTCGCATTGTTAATCACATTGAGGACGCCAAAGCTGA
TGCAAATCGTCCGATAAATAAACTAATGCGTCTGGCCGATCTGAAGATAA
AAGCACCATCTTTGCCAATTCTGGAGTCCCTGCAGGCCATTTTCCCAAAA
ACCAAAATCACTGAAGACACCGAGGTTTTGGTACGAGATCCAGAGGTTAT
GCATGCCCTATCTGTTTTACTCTCCACTTCGGATAAGAAGCCTATTAACA
ACTTTATTGTATGGTCGCTGGCTCGTAAAATGTTGCCGCATTTGTCCAAG
GAGTATCGCACTTTGGCAGAGACCTTCGACCATGCGTTGTATGGACGCAC
AGCTAGCTATCCGAGGTGGCTCATATGCAGCAAAGTGGTGCGTGATTGGC
TGCCCTTTGCGGTGGATGCATTGCAGCAACAGCCACCCAGGCAGCAATTC
GAAACGATGACGTCCAAGAGCCGGGGCTTAAACAAGACCCAGGGCAACGA
GGAGCTCCTCAAGCTGATGTTCTTCAGTCTGCGGAATCAGTTGAAAGATT
CGCTGGAGCAAGCCAAATGGCTGGAGCCGGCGGCTAGGCAATTTATCCAA
AAGAAACTGAACGAGATGCGCCTGCAGTTTGGCATACCCGATGAGGTATT
GCAGCAACCCACCTATCTTGCGCAATACTACAATGAACTGATACTCAATA
ATGTGTTTTTCGTGGAGCATTTGGAGTGGATTTGGACATTCCGTCGATCG
CAAATGGAAAAGAAGCTGGGACCGCTGGCCATACTGGATGTCATTGTTTC
CGAGATGTACACAAGGGACAATCCACAGGCCATCGCCTACTCCAATAAAC
TGAATATGCTGCTGGTCTCTAAGGTGTTGATTAGCTCCAATTACTATGAC
TACCGATATCCTGTAGCTGTGAATTTTGCCCGCATAGGCACTGATATATT
GGAGGCCCTGATCGATAACTTCTCCACCTTCCTGCTGCAGTTCAACACCC
AGAGCACGGATATCAGTGATGCAGCACCGGAGATTCGGTATGCCCAGCCG
GATGTTAATTGTCTGGCAGCAGGACAGCCACCGAGGTTGGTCCACGAGCT
GAATGAGCTGTCTAGTAATGCACTGAAGAGCTTCCATGTAACGCTGAGTG
CAGCTCGAACGGCAGCGAGGGCGTTGAGTAACTTCGTGAATGCCATCGAT
GCGGGCAGTGCCATCCAGGGATCGGGAATCGATCAGGCTAATACCTATGA
GGCCCTTGGACTTACCAGGCGCTTGAGAATACCCGGTCTGAGGTCTTTCA
ACGAGAACGAACTCTTTACGCTCTCCTACATGCAGCAGCACTGCAGCACC
ACAATTGCTGACAAGGACTACGCCAGGATTAAGCCGCTCGTAGAGAGCCA
GCTGGCCGAGAGTTATCTCTTTAACGCCACATGGCAGCATATCCAGTTTC
TACCCCGCTCCACAAACTGTGCCGCCGCGGAGGCGACTTGCTCCAACCTG
CTCTGAAAGCTTTCTAGACCAT

BS05272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 2640 CG9634-PC 1..2640 17..2656 13185 100 Plus
CG9634-RA 2640 CG9634-PA 1..2640 17..2656 13185 100 Plus
CG9634-RB 2625 CG9634-PB 1..2625 17..2656 12925 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 144..2783 17..2656 13185 100 Plus
CG9634-RA 3661 CG9634-RA 524..3163 17..2656 13185 100 Plus
CG9634-RB 3646 CG9634-RB 524..3148 17..2656 12925 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16728774..16729325 1941..1390 2745 99.8 Minus
X 23542271 X 16727950..16728453 2568..2065 2520 100 Minus
X 23542271 X 16744845..16745201 686..330 1770 99.7 Minus
X 23542271 X 16745515..16745833 335..17 1595 100 Minus
X 23542271 X 16729782..16730046 1110..846 1325 100 Minus
X 23542271 X 16744614..16744773 845..686 800 100 Minus
X 23542271 X 16729572..16729724 1261..1109 765 100 Minus
X 23542271 X 16729387..16729515 1390..1262 645 100 Minus
X 23542271 X 16728538..16728660 2064..1942 615 100 Minus
X 23542271 X 16727802..16727889 2656..2569 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:18:53 has no hits.

BS05272.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:13 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3162 17..2655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:15 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3162 17..2655 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:39 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3162 17..2655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:45 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3162 17..2655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:45 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
X 16745515..16745833 17..335 100   Minus
X 16727803..16727889 2569..2655 100 <- Minus
X 16727950..16728453 2065..2568 100 <- Minus
X 16728538..16728660 1942..2064 100 <- Minus
X 16728774..16729325 1390..1941 99 <- Minus
X 16729388..16729515 1262..1389 100 <- Minus
X 16729572..16729723 1110..1261 100 <- Minus
X 16729783..16730046 846..1109 100 <- Minus
X 16744614..16744772 687..845 100 <- Minus
X 16744845..16745195 336..686 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:15 Download gff for BS05272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16621836..16621922 2569..2655 100 <- Minus
arm_X 16621983..16622486 2065..2568 100 <- Minus
arm_X 16622571..16622693 1942..2064 100 <- Minus
arm_X 16622807..16623358 1390..1941 99 <- Minus
arm_X 16623421..16623548 1262..1389 100 <- Minus
arm_X 16623605..16623756 1110..1261 100 <- Minus
arm_X 16623816..16624079 846..1109 100 <- Minus
arm_X 16638647..16638805 687..845 100 <- Minus
arm_X 16638878..16639228 336..686 100 <- Minus
arm_X 16639548..16639866 17..335 100   Minus

BS05272.3prime Sequence

985 bp (851 high quality bases) assembled on 2005-12-02

> BS05272.3prime
ATGGTCTAGAAAGCTTTCAGAGCAGGTTGGAGCAAGTCGCCTCCGCGGCG
GCACAGTTTGTGGAGCGGGGTAGAAACTGGATATGCTGCCATGTGGCGTT
AAAGAGATAACTCTCGGCCAGCTGGCTCTCTACGAGCGGCTTAATCCTGG
CGTAGTCCTTGTCAGCAATTGTGGTGCTGCAGTGCTGCTGCATGTAGGAG
AGCGTAAAGAGTTCGTTCTCGTTGAAAGACCTCAGACCGGGTATTCTCAA
GCGCCTGGTAAGTCCAAGGGCCTCATAGGTATTAGCCTGATCGATTCCCG
ATCCCTGGATGGCACTGCCCGCATCGATGGCATTCACGAAGTTACTCAAC
GCCCTCGCTGCCGTTCGAGCTGCACTCAGCGTTACATGGAAGCTCTTCAG
TGCATTACTAGACAGCTCATTCAGCTCGTGGACCAACCTCGGTGGCTGTC
CTGCTGCCAGACAATTAACATCCGGCTGGGCATACCGAATCTCCGGTGCT
GCATCACTGATATCCGTGCTCTGGGTGTTGAACTGCAGCAGGAAGGTGGA
GAAGTTATCGATCAGGGCCTCCAATATATCAGTGCCTATGCGGGCAAAAT
TCACAGCTACAGGATATCGGTAGTCATAGTAATTGGAGCTAATCAACACC
TTAGAGACCAGCAGCATATTCAGTTTATTGGAGTAGGCGATGGCCTGTGG
ATTGTCCCTTGTGTACATCTCGGAAACAATGACATCCAGTATGGCCAGCG
GTCCCAGCTTCTTTTCCATTTGCGATCGACGGAATGTCCAAATCCACTCC
AAATGCTCCACGAAAAACACATTATTGAGTATCAGTTCATTGTAGTATTG
CGCAAGATAGGTGGGTTGCTGCAATACCTCATCGGGTATGCCAAACTGCA
GGCGCATCTCGTTCAGTTTCTTTTGGATAATTGCCTAGCCGCCCGGCTCA
GCCATTTGGCTTGCTCCACCGAATCTTTTCACTGA

BS05272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PA 2640 CG9634-RA 1727..2640 930..17 4545 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 1814..2783 985..17 4720 99.3 Minus
CG9634-RB 3646 CG9634-RB 2179..3148 985..17 4720 99.3 Minus
CG9634-RA 3661 CG9634-RA 2194..3163 985..17 4720 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16727950..16728453 105..608 2520 100 Plus
X 23542271 X 16728774..16729028 732..985 1105 96.5 Plus
X 23542271 X 16728538..16728660 609..731 615 100 Plus
X 23542271 X 16727802..16727889 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:11:59 has no hits.

BS05272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:36 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1672..2640 17..984 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:36 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1672..2640 17..984 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:01:59 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 2195..3163 17..984 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:06 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 2195..3163 17..984 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:06 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16727802..16727889 17..104 100 <- Plus
X 16727950..16728453 105..608 100 <- Plus
X 16728538..16728660 609..731 100 <- Plus
X 16728774..16729027 732..984 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:01:59 Download gff for BS05272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16621835..16621922 17..104 100 <- Plus
arm_X 16621983..16622486 105..608 100 <- Plus
arm_X 16622571..16622693 609..731 100 <- Plus
arm_X 16622807..16623060 732..984 97   Plus

BS05272.5prime Sequence

944 bp (854 high quality bases) assembled on 2005-12-02

> BS05272.5prime
GAAGTTATCAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAA
TCTGCGCCATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGC
CAGGACGAGATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGA
AACGGCTCCACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTT
CACATCTGACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAAC
GAGGTCGCTGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACC
CAACTCCACGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAG
GCCGACGATCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATC
CTGTACGTAACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCAT
CCTGCTGCTGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGC
TCTGCCTGGATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGG
GCCAACACCTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGG
CAATTTTGCCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCG
GCGAGTGGAACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTG
AATCGATTTATTGCAATGCTGCCAAATTCGCAAGAGGGTTCCGTGGAGTC
CACGGTGAGCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACA
AGAGCCAGTCGGATCTGCTCCTGAAACGGGCCATTAATGCAGTGTATGGC
TGGCAGGCATTCCGCGACTCCAATCGACTGCAATCCTGGGAATACCAGCG
GGTTCTGGTCGTCCTACAGGCCAAACATGGCATAATTTCTTACT

BS05272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PA 2640 CG9634-RA 1..918 17..934 4565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 144..1071 17..944 4595 99.7 Plus
CG9634-RA 3661 CG9634-RA 524..1451 17..944 4595 99.7 Plus
CG9634-RB 3646 CG9634-RB 524..1436 17..944 4360 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16744845..16745201 686..330 1770 99.7 Minus
X 23542271 X 16745515..16745833 335..17 1595 100 Minus
X 23542271 X 16744614..16744773 845..686 800 100 Minus
X 23542271 X 16729948..16730046 944..846 450 97 Minus
Blast to na_te.dros performed on 2015-02-12 11:06:17 has no hits.

BS05272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:37 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1..928 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:38 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1..928 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:31 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..1451 17..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:22 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..1451 17..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:22 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16729948..16730046 846..944 97 <- Minus
X 16744614..16744772 687..845 100 <- Minus
X 16744845..16745195 336..686 100 <- Minus
X 16745515..16745833 17..335 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:31 Download gff for BS05272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16623981..16624079 846..944 97 <- Minus
arm_X 16638647..16638805 687..845 100 <- Minus
arm_X 16638878..16639228 336..686 100 <- Minus
arm_X 16639548..16639866 17..335 100   Minus

BS05272.pep Sequence

Translation from 16 to 2655

> BS05272.pep
MAINQGKYKPSICAIDEVDDRSFKLHNSQDEIGGKQQLQQIEGSETAPLT
TNQQKLHMDDGSHLTPKDLEAARQDALNEVAAGGAGGRTPAAITPNSTHP
SANGLRALLLPGRRSFDALMSLSRKRRILYVTTACLCALLLLIIILLLAF
WPEVPFYLRAPLCLDKECVESSRQLLLWANTSKSPCHETYEWACGNFASD
YANHEYFVIKRGEWNYETYNEYQELNELNRFIAMLPNSQEGSVESTVSSL
YRSCRETDVLDKSQSDLLLKRAINAVYGWQAFRDSNRLQSWEYKRVLVVL
QAKHGIFPYYRVTVENGFSNPHDYVITLDEGELGLPDKYFYGNDADEEVV
RGYKLLLRDFAINMGIVSREADLFADDIFHYERRIVNHIEDAKADANRPI
NKLMRLADLKIKAPSLPILESLQAIFPKTKITEDTEVLVRDPEVMHALSV
LLSTSDKKPINNFIVWSLARKMLPHLSKEYRTLAETFDHALYGRTASYPR
WLICSKVVRDWLPFAVDALQQQPPRQQFETMTSKSRGLNKTQGNEELLKL
MFFSLRNQLKDSLEQAKWLEPAARQFIQKKLNEMRLQFGIPDEVLQQPTY
LAQYYNELILNNVFFVEHLEWIWTFRRSQMEKKLGPLAILDVIVSEMYTR
DNPQAIAYSNKLNMLLVSKVLISSNYYDYRYPVAVNFARIGTDILEALID
NFSTFLLQFNTQSTDISDAAPEIRYAQPDVNCLAAGQPPRLVHELNELSS
NALKSFHVTLSAARTAARALSNFVNAIDAGSAIQGSGIDQANTYEALGLT
RRLRIPGLRSFNENELFTLSYMQQHCSTTIADKDYARIKPLVESQLAESY
LFNATWQHIQFLPRSTNCAAAEATCSNLL*

BS05272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PC 879 CG9634-PC 1..879 1..879 4556 100 Plus
CG9634-PA 879 CG9634-PA 1..879 1..879 4556 100 Plus
CG9634-PB 874 CG9634-PB 1..874 1..879 4517 99.4 Plus
Nep4-PC 978 CG4058-PC 385..816 249..702 277 21.3 Plus
Nep4-PB 978 CG4058-PB 385..816 249..702 277 21.3 Plus