Clone Sequence Records
BS05274.3prime Sequence
950 bp (842 high quality bases) assembled on 2005-12-02
> BS05274.3prime
ATGGTCTAGAAAGCTTTCAGGAGTTCTTCTTGGGATGGTAGTGCTCCCAC
TTGCGATGGTTTAGCGAATTGAAATCCGGGCAGTGGTGAGCGATTTTGCG
CAAATAGTCGGACAACTTGAGCAGCTCGGTGTCCGTGCCACGGTTGAGAT
GAGCCTGACGGAATGGGCGGATCTTTAGGCCGGACTTTGGGTTCATAAGG
AAGTTGCGACGGATGTCATCAAACATGATAGTGTTGCTCGAGTTGTATTG
CTTGTACAGGGCCCAGATTACACCAAGCGGCTTTACGTCCACCACACCGC
GCTCCGGCACATGAACTGATATCATGGCGGTGGAGTCCAGATAGAACATC
ACCTTGTAGTTATCGTTACTGGCCACGCCCAGCAGGCGCATCTTTTCCTC
GATCCAGCGCATGCTGGTGGCGGACCAGATGACAATGTCGTAGTCCTCGT
AGGCGGAAGTCAGAAACTCGTGCAGATACGGACGCATTAGCTCCGTGCCT
GTTTCAGCAGGCGATCGGTGATCGAATAGGGTATAGTCTATGTCCAGGAC
AAGCAGCTTCTTGCCCTCACGCGGCGGCGCTAACTCCTTGATCTTGTAGT
CTCGCACACGACGCTGCACCTTGGCCAAATAGACGGCGGAGTGCTCCACG
GACTCTTCGCGTTCATCGGCGTCATCGAAGTCGTCGACCACTTCGCCAAT
ATTATCGGGCAGGCTGCACGCATCCTCGATATCGGCCTCTGTGGAGCCCA
CCATCATAAGCTTAAAGTTGGGCTTCAGCTCCAAAGCGCTGATCTTCACA
TTGTCGGCTGCTGTCTTTCCTTTGTACTTCAGGTTGAGCAGCTTTTGACG
TTCCGGACGCACCTGTGTCTTGCGGAATATCTCGTGACGCAGCACTTCCA
CGGTGTCCTGGTCGGTGAGGTCCACCGGGGACTCCTTTACACTCATTTTT
BS05274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6697-PA | 963 | CG6697-RA | 43..963 | 937..17 | 4580 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 1202 | CG6697-RA | 197..1131 | 949..16 | 4605 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23061875..23062680 | 821..16 | 4030 | 100 | Minus |
| 3R | 32079331 | 3R | 23061695..23061820 | 944..819 | 585 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:15:45 has no hits.
BS05274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:38 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-PA | 29..963 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:39 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-PA | 29..963 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:51 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 196..1134 | 11..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:05 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 196..1134 | 11..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:05 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23061688..23061819 | 820..950 | 96 | -> | Minus |
| 3R | 23061877..23062683 | 11..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:51 Download gff for
BS05274.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18887410..18887541 | 820..950 | 96 | -> | Minus |
| arm_3R | 18887599..18888405 | 11..819 | 99 | | Minus |
BS05274.5prime Sequence
968 bp (848 high quality bases) assembled on 2005-12-02
> BS05274.5prime
GAAGTTATCAGTCGACATGGAGGTCAAAGAAGTGGTAGTGATTGTAAAAT
GGAGTGGTAAGGAGTACCCGGTGGACCTCACCGACCAGGACACCGTGGAA
GTGCTGCGTCACGAGATATTCCGCAAGACACAGGTGCGTCCGGAACGTCA
AAAGCTGCTCAACCTGAAGTACAAAGGAAAGACAGCAGCCGACAATGTGA
AGATCAGCGCTTTGGAGCTGAAGCCCAACTTTAAGCTTATGATGGTGGGC
TCCACAGAGGCCGATATCGAGGATGCGTGCAGCCTGCCCGATAATATTGG
CGAAGTGGTCGACGACTTCGATGACGCCGATGAACGCGAAGAGTCCGTGG
AGCACTCCGCCGTCTATTTGGCCAAGGTGCAGCGTCGTGTGCGAGACTAC
AAGATCAAGGAGTTAGCGCCGCCGCGTGAGGGCAAGAAGCTGCTTGTCCT
GGACATAGACTATACCCTATTCGATCACCGATCGCCTGCTGAAACAGGCA
CGGAGCTAATGCGTCCGTATCTGCACGAGTTTCTGACTTCCGCCTACGAG
GACTACGACATTGTCATCTGGTCCGCCACCAGCATGCGCTGGATCGAGGA
AAAGATGCGCCTGCTGGGCGTGGCCAGTAACGATAACTACAAGGTGATGT
TCTATCTGGACTCCACCGCCATGATATCAGTTCATGTGCCGGAGCGCGGT
GTGGTGGACGTAAAGCCGCTTGGTGTAATCTGGGCCCTGTACAAGCAATA
CAACTCGAGCAACACTATCATGTTTGATGACATCCGTCGCAACTTCCTTA
TGAACCCAAAGTCCGGCCTAAAGATCCGCCCATTCCGTCAGGCTCATCTC
AACCGTGGCACGGACACCGAGCTGCTCAAGTTGTCCGACTATTTGCGCAA
AATCGCTCACCACTGCCCGGATTTCATTTCGCTAAAACATCGCAAGTGGG
AGCACTACCCTCCCAAGA
BS05274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6697-PA | 963 | CG6697-RA | 1..952 | 17..968 | 4685 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 1202 | CG6697-RA | 168..1119 | 17..968 | 4715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23061875..23062668 | 175..968 | 3925 | 99.6 | Plus |
| 3R | 32079331 | 3R | 23061660..23061820 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:58:27 has no hits.
BS05274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:40 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:41 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:21 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1118 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:50 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 160..1118 | 9..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:50 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23061652..23061819 | 9..176 | 97 | -> | Plus |
| 3R | 23061877..23062667 | 177..967 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:21 Download gff for
BS05274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18887374..18887541 | 9..176 | 97 | -> | Plus |
| arm_3R | 18887599..18888389 | 177..967 | 99 | | Plus |
BS05274.complete Sequence
995 bp (995 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635091
> BS05274.complete
GAAGTTATCAGTCGACATGGAGGTCAAAGAAGTGGTAGTGATTGTAAAAT
GGAGTGGTAAGGAGTACCCGGTGGACCTCACCGACCAGGACACCGTGGAA
GTGCTGCGTCACGAGATATTCCGCAAGACACAGGTGCGTCCGGAACGTCA
AAAGCTGCTCAACCTGAAGTACAAAGGAAAGACAGCAGCCGACAATGTGA
AGATCAGCGCTTTGGAGCTGAAGCCCAACTTTAAGCTTATGATGGTGGGC
TCCACAGAGGCCGATATCGAGGATGCGTGCAGCCTGCCCGATAATATTGG
CGAAGTGGTCGACGACTTCGATGACGCCGATGAACGCGAAGAGTCCGTGG
AGCACTCCGCCGTCTATTTGGCCAAGGTGCAGCGTCGTGTGCGAGACTAC
AAGATCAAGGAGTTAGCGCCGCCGCGTGAGGGCAAGAAGCTGCTTGTCCT
GGACATAGACTATACCCTATTCGATCACCGATCGCCTGCTGAAACAGGCA
CGGAGCTAATGCGTCCGTATCTGCACGAGTTTCTGACTTCCGCCTACGAG
GACTACGACATTGTCATCTGGTCCGCCACCAGCATGCGCTGGATCGAGGA
AAAGATGCGCCTGCTGGGCGTGGCCAGTAACGATAACTACAAGGTGATGT
TCTATCTGGACTCCACCGCCATGATATCAGTTCATGTGCCGGAGCGCGGT
GTGGTGGACGTAAAGCCGCTTGGTGTAATCTGGGCCCTGTACAAGCAATA
CAACTCGAGCAACACTATCATGTTTGATGACATCCGTCGCAACTTCCTTA
TGAACCCAAAGTCCGGCCTAAAGATCCGCCCATTCCGTCAGGCTCATCTC
AACCGTGGCACGGACACCGAGCTGCTCAAGTTGTCCGACTATTTGCGCAA
AATCGCTCACCACTGCCCGGATTTCAATTCGCTAAACCATCGCAAGTGGG
AGCACTACCATCCCAAGAAGAACTCCTGAAAGCTTTCTAGACCAT
BS05274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 963 | CG6697-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-RA | 1202 | CG6697-RA | 168..1131 | 17..980 | 4820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23061875..23062680 | 175..980 | 4030 | 100 | Plus |
| 3R | 32079331 | 3R | 23061660..23061820 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:19:13 has no hits.
BS05274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:50 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:53 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-RA | 158..1132 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:20 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 168..1129 | 17..978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:50 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6697-RA | 158..1132 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:48 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ublcp1-RA | 168..1129 | 17..978 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:48 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23061660..23061819 | 17..176 | 100 | -> | Plus |
| 3R | 23061877..23062678 | 177..978 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:20 Download gff for
BS05274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18887382..18887541 | 17..176 | 100 | -> | Plus |
| arm_3R | 18887599..18888400 | 177..978 | 100 | | Plus |
BS05274.pep Sequence
Translation from 16 to 978
> BS05274.pep
MEVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNL
KYKGKTAADNVKISALELKPNFKLMMVGSTEADIEDACSLPDNIGEVVDD
FDDADEREESVEHSAVYLAKVQRRVRDYKIKELAPPREGKKLLVLDIDYT
LFDHRSPAETGTELMRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLL
GVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNT
IMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTDTELLKLSDYLRKIAHHC
PDFNSLNHRKWEHYHPKKNS*
BS05274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ublcp1-PA | 320 | CG6697-PA | 1..320 | 1..320 | 1678 | 100 | Plus |
