Clone BS05277 Report

Search the DGRC for BS05277

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:52
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptfor-RC
Protein status:BS05277.pep: full length peptide match
Sequenced Size:2717

Clone Sequence Records

BS05277.complete Sequence

2717 bp assembled on 2010-04-23

GenBank Submission: KX799663

> BS05277.complete
GAAGTTATCAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCG
ATGCGAGTCTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAG
GCCAATTGGCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGG
CACCAAATTGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCG
AGGGCATCTCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGG
CAGCTGGAGCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGA
ACTCAGCGGCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGA
TGCATAACGTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTG
GAAGATGCTTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCC
TGCAGTTAACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCA
GACCCCGGCAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAA
ACCATGTCGCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAAT
CAAGGAAAATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGG
CTGCAGAGGATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGA
CTGATGGCTCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGT
ATCGAAACCCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGG
TTAGGATGCCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAGGTCT
AGGGATTCCACCGCCTCCCAGAGACGTCTCAGTTTGGAGCAGGCCATCGA
GGGACTCAAACTGGAGGGGGAGAAGGCTGTTCGTCAGAAGAGTCCACAAA
TCTCACCAGCTGCCAGCAGTAATGGCAGCTCCAAGGATCTCAACGGGGAG
GGTTTCTGTATCCCACGACCGCGCCTCATCGTTCCAGTGCACACATATGC
CCGTCGACGCAGGACGGGAAATCTCAAGGAGCAATCCAGCGGTGGGCAGG
AGGAGGAAGCAGAGAAGGATGGACGCGTGGAGGTTTCCCGCGAGGGCAAG
TACCTCTCCACATTGTCGGGAGCGAAGGTCCTTGGCGAATTGGCGATCCT
GTACAACTGCCAGCGGACGGCGACCATCACCGCGATCACCGAGTGCAACC
TGTGGGCCATCGAGCGCCAGTGCTTTCAGACCATCATGATGCGAACGGGC
CTGATCCGGCAGGCGGAGTACAGCGATTTCCTCAAGAGTGTGCCCATCTT
CAAAGACCTGGCGGAAGACACGCTCATCAAAATCTCCGATGTTTTGGAGG
AGACGCACTACCAGCGTGGCGACTACATAGTGCGCCAAGGCGCCCGAGGC
GATACCTTCTTCATCATATCCAAGGGAAAAGTGCGAGTGACGATCAAGCA
GCAGGACACGCAGGAGGAGAAGTTCATTCGCATGCTGGGCAAAGGGGATT
TCTTTGGAGAGAAGGCTCTCCAGGGCGATGATCTGCGCACGGCGAATATT
ATTTGCGAGTCCGCCGATGGCGTCAGTTGTCTGGTCATCGATCGCGAGAC
CTTCAATCAGCTAATTTCCAATCTAGACGAGATCAAGCATCGCTACGACG
ACGAGGGCGCCATGGAACGCAGAAAGATCAACGAGGAATTCCGGGACATT
AACCTCACAGATCTGCGCGTCATCGCAACCCTTGGAGTTGGAGGCTTCGG
TCGCGTAGAGCTGGTCCAAACTAATGGAGATAGCTCCAGGTCCTTCGCGC
TCAAGCAGATGAAAAAGTCACAGATTGTGGAGACGCGTCAGCAGCAACAC
ATCATGTCCGAGAAGGAGATCATGGGCGAGGCCAATTGCCAGTTCATCGT
GAAGCTGTTCAAGACCTTCAAGGACAAGAAGTACCTGTACATGCTGATGG
AGAGTTGCCTGGGCGGAGAGCTCTGGACGATTCTACGGGACAAGGGCAAC
TTCGACGACAGCACCACCCGCTTCTACACGGCATGTGTGGTGGAGGCCTT
TGATTACTTGCACTCGCGTAACATCATCTACCGCGATCTTAAGCCGGAGA
ACCTGCTGCTCAATGAACGAGGATATGTGAAGCTGGTGGACTTTGGCTTT
GCCAAGAAGCTGCAGACGGGCAGGAAGACCTGGACTTTCTGCGGCACTCC
AGAGTACGTGGCTCCCGAGGTGATTCTCAACCGGGGCCACGACATCAGTG
CGGATTACTGGTCGCTGGGAGTGCTCATGTTCGAGTTACTTACTGGTACC
CCTCCATTCACGGGCTCGGATCCCATGCGCACCTACAACATTATACTTAA
GGGCATCGACGCCATCGAATTCCCAAGGAATATCACCCGCAATGCCAGCA
ACCTGATCAAGAAGCTCTGTCGCGACAATCCAGCCGAGCGTTTGGGCTAC
CAGCGTGGGGGAATCAGCGAGATCCAAAAGCACAAATGGTTCGATGGCTT
CTATTGGTGGGGCCTGCAGAACTGCACACTGGAACCGCCCATTAAGCCCG
CCGTGAAAAGCGTTGTGGATACAACAAACTTTGATGACTATCCTCCCGAT
CCTGAGGGTCCGCCGCCAGATGATGTCACTGGATGGGACAAGGACTTCTG
AAAGCTTTCTAGACCAT

BS05277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 2685 CG10033-PK 1..2685 17..2701 13425 100 Plus
for-RG 2685 CG10033-PG 1..2685 17..2701 13425 100 Plus
for-RD 2685 CG10033-PD 1..2685 17..2701 13425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 378..3062 17..2701 13425 100 Plus
for-RG 3826 CG10033-RG 438..3122 17..2701 13425 100 Plus
for-RD 4218 CG10033-RD 830..3514 17..2701 13425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3626337..3627438 1118..17 5510 100 Minus
2L 23513712 2L 3623260..3623881 2347..1726 3110 100 Minus
2L 23513712 2L 3624440..3624678 1575..1337 1195 100 Minus
2L 23513712 2L 3625997..3626217 1338..1118 1105 100 Minus
2L 23513712 2L 3623006..3623196 2535..2345 955 100 Minus
2L 23513712 2L 3622778..3622949 2701..2530 845 99.4 Minus
2L 23513712 2L 3624223..3624374 1726..1575 760 100 Minus
2L 23513712 2L 786790..787109 2292..1973 340 73.8 Minus
Blast to na_te.dros performed 2014-11-27 01:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6864 242..393 133 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2521 319..405 131 62.5 Plus

BS05277.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-23 10:33:34 Download gff for BS05277.complete
Subject Subject Range Query Range Percent Splice Strand
for-RC 339..3022 17..2700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:22 Download gff for BS05277.complete
Subject Subject Range Query Range Percent Splice Strand
for-RG 438..3121 17..2700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:45 Download gff for BS05277.complete
Subject Subject Range Query Range Percent Splice Strand
for-RD 830..3513 17..2700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:45 Download gff for BS05277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3624224..3624373 1576..1725 100 <- Minus
2L 3624440..3624676 1339..1575 100 <- Minus
2L 3625997..3626216 1119..1338 100 <- Minus
2L 3623262..3623881 1726..2345 100 <- Minus
2L 3626337..3627438 17..1118 100   Minus
2L 3622779..3622943 2536..2700 100 <- Minus
2L 3623006..3623195 2346..2535 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:22 Download gff for BS05277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3625997..3626216 1119..1338 100 <- Minus
arm_2L 3622779..3622943 2536..2700 100 <- Minus
arm_2L 3623006..3623195 2346..2535 100 <- Minus
arm_2L 3623262..3623881 1726..2345 100 <- Minus
arm_2L 3624224..3624373 1576..1725 100 <- Minus
arm_2L 3624440..3624676 1339..1575 100 <- Minus
arm_2L 3626337..3627438 17..1118 100   Minus

BS05277.3prime Sequence

903 bp (843 high quality bases) assembled on 2005-12-02

> BS05277.3prime
ATGGTCTAGAAAGCTTTCAGAAGTCCTTGTCCCATCCAGTGACATCATCT
GGCGGCGGACCCTCAGGATCGGGAGGATAGTCATCAAAGTTTGTTGTATC
CACAACGCTTTTCACGGCGGGCTTAATGGGCGGTTCCAGTGTGCAGTTCT
GCAGGCCCCACCAATAGAAGCCATCGAACCATTTGTGCTTTTGGATCTCG
CTGATTCCCCCACGCTGGTAGCCCAAACGCTCGGCTGGATTGTCGCGACA
GAGCTTCTTGATCAGGTTGCTGGCATTGCGGGTGATATTCCTTGGGAATT
CGATGGCGTCGATGCCCTTAAGTATAATGTTGTAGGTGCGCATGGGATCC
GAGCCCGTGAATGGAGGGGTACCAGTAAGTAACTCGAACATGAGCACTCC
CAGCGACCAGTAATCCGCACTGATGTCGTGGCCCCGGTTGAGAATCACCT
CGGGAGCCACGTACTCTGGAGTGCCGCAGAAAGTCCAGGTCTTCCTGCCC
GTCTGCAGCTTCTTGGCAAAGCCAAAGTCCACCAGCTTCACATATCCTCG
TTCATTGAGCAGCAGGTTCTCCGGCTTAAGATCGCGGTAGATGATGTTAC
GCGAGTGCAAGTAATCAAAGGCCTCCACCACACATGCCGTGTAGAAGCGG
GTGGTGCTGTCGTCGAAGTTGCCCTTGTCCCGTAGAATCGTCCAGAGCTC
TCCGCCCAGGCAACTCTCCATCAGCATGTACAGGTACTTCTTGTCCTTGA
AGGTCTTGAACAGCTTCACGATGAACTGGCAATTGGCCTCGCCCATGATC
TCCTTCTCGGACATGATGTGTTGCTGCTGACGCGTCTCCACAATCTGTGA
CTTTTTCATCTGCTTGAGCGCGAAGGACCTGGAGCTATCTCCATTAGTTT
GGA

BS05277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10033-PE 2805 for-RE 1919..2805 903..17 4435 100 Minus
CG10033-PC 2685 for-RC 1799..2685 903..17 4435 100 Minus
CG10033-PJ 2805 for-RJ 1919..2805 903..17 4435 100 Minus
CG10033-PH 3267 for-RH 2381..3267 903..17 4435 100 Minus
CG10033-PD 2685 for-RD 1799..2685 903..17 4435 100 Minus
CG10033-PG 2685 for-RG 1799..2685 903..17 4435 100 Minus
CG10033-PF 2685 for-RF 1799..2685 903..17 4435 100 Minus
CG10033-PI 3267 for-RI 2381..3267 903..17 4435 100 Minus
CG10033-PA 3267 for-RA 2381..3267 903..17 4435 100 Minus
CG10033-PB 2229 for-RB 1343..2229 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 2176..3062 903..17 4435 100 Minus
for-RA 4595 CG10033-RA 3005..3891 903..17 4435 100 Minus
for-RI 4581 CG10033-RI 2991..3877 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3623260..3623792 371..903 2665 100 Plus
2L 23513712 2L 3623006..3623196 183..373 955 100 Plus
2L 23513712 2L 3622778..3622949 17..188 845 99.4 Plus
2L 23513712 2L 786790..787109 426..745 340 73.8 Plus
Blast to na_te.dros performed on 2015-02-11 11:18:20 has no hits.

BS05277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:45 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
for-PG 1800..2685 17..902 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:48 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10033-PB 1344..2229 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:50 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
for-RI 2992..3877 17..902 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:10 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
for-RI 2992..3877 17..902 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:10 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3622773..3622943 14..182 98 <- Plus
2L 3623006..3623195 183..372 100 <- Plus
2L 3623262..3623791 373..902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:50 Download gff for BS05277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3622773..3622943 14..182 98 <- Plus
arm_2L 3623006..3623195 183..372 100 <- Plus
arm_2L 3623262..3623791 373..902 100   Plus

BS05277.5prime Sequence

855 bp (769 high quality bases) assembled on 2005-12-02

> BS05277.5prime
GAAGTTATCAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCG
ATGCGAGTCTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAG
GCCAATTGGCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGG
CACCAAATTGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCG
AGGGCATCTCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGG
CAGCTGGAGCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGA
ACTCAGCGGCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGA
TGCATAACGTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTG
GAAGATGCTTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCC
TGCAGTTAACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCA
GACCCCGGCAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAA
ACCATGTCGCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAAT
CAAGGAAAATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGG
CTGCAGAGGATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGA
CTGATGGCTCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGT
ATCGAAACCCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGG
TTAGGATGCCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAAGTCT
AGGGA

BS05277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10033-PE 2805 for-RE 1..839 17..855 4170 99.8 Plus
CG10033-PC 2685 for-RC 1..839 17..855 4170 99.8 Plus
CG10033-PJ 2805 for-RJ 1..839 17..855 4170 99.8 Plus
CG10033-PD 2685 for-RD 1..839 17..855 4170 99.8 Plus
CG10033-PG 2685 for-RG 1..839 17..855 4170 99.8 Plus
CG10033-PF 2685 for-RF 1..839 17..855 4170 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 378..1216 17..855 4180 99.9 Plus
for-RG 3826 CG10033-RG 438..1276 17..855 4180 99.9 Plus
for-RD 4218 CG10033-RD 830..1668 17..855 4180 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3626600..3627438 855..17 4180 99.9 Minus
Blast to na_te.dros performed 2015-02-11 15:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6864 242..393 133 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2521 319..405 131 62.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1098 317..354 111 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6843 318..405 109 59.6 Plus

BS05277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:46 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
for-PG 1..838 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:49 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10033-PF 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:07:08 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RG 429..1275 8..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:31 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RD 821..1667 8..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:31 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3626601..3627436 19..854 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:07:08 Download gff for BS05277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3626601..3627436 19..854 99 <- Minus

BS05277.pep Sequence

Translation from 16 to 2700

> BS05277.pep
MKIKHYPGKAVDASLSLEGSSAMGALYEANWLRAANQPAAPATTGTKLSR
QSSSAGSSFLIEGISALSKYQMTLENIRQLELQSRDKRIASTIKELSGYR
PSALQHHQQQQMHNVWVAEDQDQEHEELEDASEGKEKLASIQEPPAVNHY
VLDPTERPRVPRPRQQFSVKPPSLRRSQTMSQPPSYATLRSPPKIKENLS
KSSSAYSTFSSAAEDSQDQVVICQQPQRLMAPPPREPPPEPPKRVSKPLS
RSQTSVQRYATVRMPNQTTSFSRSVVRSRDSTASQRRLSLEQAIEGLKLE
GEKAVRQKSPQISPAASSNGSSKDLNGEGFCIPRPRLIVPVHTYARRRRT
GNLKEQSSGGQEEEAEKDGRVEVSREGKYLSTLSGAKVLGELAILYNCQR
TATITAITECNLWAIERQCFQTIMMRTGLIRQAEYSDFLKSVPIFKDLAE
DTLIKISDVLEETHYQRGDYIVRQGARGDTFFIISKGKVRVTIKQQDTQE
EKFIRMLGKGDFFGEKALQGDDLRTANIICESADGVSCLVIDRETFNQLI
SNLDEIKHRYDDEGAMERRKINEEFRDINLTDLRVIATLGVGGFGRVELV
QTNGDSSRSFALKQMKKSQIVETRQQQHIMSEKEIMGEANCQFIVKLFKT
FKDKKYLYMLMESCLGGELWTILRDKGNFDDSTTRFYTACVVEAFDYLHS
RNIIYRDLKPENLLLNERGYVKLVDFGFAKKLQTGRKTWTFCGTPEYVAP
EVILNRGHDISADYWSLGVLMFELLTGTPPFTGSDPMRTYNIILKGIDAI
EFPRNITRNASNLIKKLCRDNPAERLGYQRGGISEIQKHKWFDGFYWWGL
QNCTLEPPIKPAVKSVVDTTNFDDYPPDPEGPPPDDVTGWDKDF*

BS05277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
for-PK 894 CG10033-PK 1..894 1..894 4645 100 Plus
for-PG 894 CG10033-PG 1..894 1..894 4645 100 Plus
for-PD 894 CG10033-PD 1..894 1..894 4645 100 Plus
for-PC 894 CG10033-PC 1..894 1..894 4645 100 Plus
for-PJ 934 CG10033-PJ 1..934 1..894 4594 95.7 Plus