Clone Sequence Records
BS05280.complete Sequence
1964 bp assembled on 2009-12-07
GenBank Submission: KX799404
> BS05280.complete
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTATACCATCGCTA
TACTCATACACCCGCCAAGGAACATTCGATCTCGAACTTCAAGGCACAAA
GACAAAGCGTTCCCTGGATGCTAACCACATACAGGAGGAGGAGATCGATG
TACCAGGCAGTAACGTTCAAAGCTTTCCCGATGCCATGGTCTGTTCAACA
GCCACGTTTGATGGCGAATCGCGACTAGATGCATTTGATAAGGACTTGCT
TTCATCTCTACCATCAATACCATCAATACCATCGATACCTTCGATACCGC
CCGTGTCAGTAGCCAAAAAGGAGCCATTTATGACGGAGTTGGTCGACGAA
ACACTCGCTCAACAGATTAACGAACTGCTGGAGCGGCACAAACTCGCAAA
CACGGGGATCAGTGATCATGAACAACAGCAGGGACTTGATCCCAGGACAG
TCATACTGTTGGTGAACCCCAGCAACTACAGCAGCACTCAGGTAGCATAC
ACAACGAGCAACGTGGCCAAGACTAAGCCAATGCCTCTACGTGAGACCAA
TGCGGCGGGCTCAATGCGCCGTCGATCGTCGTCGCTTTCCATTCAGGACA
AGTCTAAGCTGCCCCGGGAAGTCCTGAAGTCCGATCGCCAGGTGGAGAAT
CTTCCGCCGCCCAAGGAGACCAAGAACACAGCCACTGTTGGGCCGATGGG
TGCAGCAGCTGCCTTTCGCCAGAGGAGCAACTCCTTCTCCACGCCAAGTA
ATCCGTCCACAAAGGCCTACGAGAACAGGCGTACTCTAATGAGCAGCCGC
TTGAGGAATCCAGCCATAAACGAATCGGTGTCCAAACCCAGTGGAAGTGT
TAAGGCGACGAAGCCCATCAAGCCGGTGGTTCCCATTATGAAAGTGACCG
CAAGCAACGATTCCACCTACCTGAATCCGTTCCATCCGCGTGTACCCGAA
ACGCCCATCTCATCGAGGACCAAACCCGCCCAAAACATATCCTGCACGAG
CACACCACTGCCACAAATGCGCACCCAGCAGCGCAGATCCCTGAAGCCAA
TGGCCATGACCGCAGGATCGGGATCCCTGTCAAATACCTCCTATTCGACG
CCCAGCATTAGGGGGCCGAGCTTCTGCAAGAAGAGCGGTTCCGGCTAGAA
GCTTTCTAGACCAT
BS05280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-RB | 1932 | CG3679-PB | 1..1932 | 17..1948 | 9660 | 100 | Plus |
| CG3679-RA | 1932 | CG3679-PA | 1..1932 | 17..1948 | 9660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-RB | 3215 | CG3679-RB | 121..2053 | 17..1949 | 9665 | 100 | Plus |
| CG3679-RA | 2760 | CG3679-RA | 121..2053 | 17..1949 | 9665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16305154..16306215 | 888..1949 | 5295 | 99.9 | Plus |
| X | 23542271 | X | 16304251..16304976 | 168..893 | 3630 | 100 | Plus |
| X | 23542271 | X | 16303990..16304143 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:25:59 has no hits.
BS05280.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:57 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 77..2008 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:07 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 121..2052 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:46 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 77..2008 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:20 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 121..2052 | 17..1948 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:20 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16303990..16304142 | 17..169 | 100 | -> | Plus |
| X | 16304253..16304975 | 170..892 | 100 | -> | Plus |
| X | 16305159..16306214 | 893..1948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:07 Download gff for
BS05280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16198023..16198175 | 17..169 | 100 | -> | Plus |
| arm_X | 16198286..16199008 | 170..892 | 100 | -> | Plus |
| arm_X | 16199192..16200247 | 893..1948 | 100 | | Plus |
BS05280.3prime Sequence
895 bp (870 high quality bases) assembled on 2005-12-02
> BS05280.3prime
ATGGTCTAGAAAGCTTCTAGCCGGAACCGCTCTTCTTGCAGAAGCTCGGC
CCCCTAATGCTGGGCGTCGAATAGGAGGTATTTGACAGGGATCCCGATCC
TGCGGTCATGGCCATTGGCTTCAGGGATCTGCGCTGCTGGGTGCGCATTT
GTGGCAGTGGTGTGCTCGTGCAGGATATGTTTTGGGCGGGTTTGGTCCTC
GATGAGATGGGCGTTTCGGGTACACGCGGATGGAACGGATTCAGGTAGGT
GGAATCGTTGCTTGCGGTCACTTTCATAATGGGAACCACCGGCTTGATGG
GCTTCGTCGCCTTAACACTTCCACTGGGTTTGGACACCGATTCGTTTATG
GCTGGATTCCTCAAGCGGCTGCTCATTAGAGTACGCCTGTTCTCGTAGGC
CTTTGTGGACGGATTACTTGGCGTGGAGAAGGAGTTGCTCCTCTGGCGAA
AGGCAGCTGCTGCACCCATCGGCCCAACAGTGGCTGTGTTCTTGGTCTCC
TTGGGCGGCGGAAGATTCTCCACCTGGCGATCGGACTTCAGGACTTCCCG
GGGCAGCTTAGACTTGTCCTGAATGGAAAGCGACGACGATCGACGGCGCA
TTGAGCCCGCCGCATTGGTCTCACGTAGAGGCATTGGCTTAGTCTTGGCC
ACGTTGCTCGTTGTGTATGCTACCTGAGTGCTGCTGTAGTTGCTGGGGTT
CACCAACAGTATGACTGTCCTGGGATCAAGTCCCTGCTGTTGTTCATGAT
CACTGATCCCCGTGTTTGCGAGTTTGTGCCGCTCCAGCAGTTCGTTAATC
TGTTGAGCGAGTGTTTCGTCGACCAACTCCGTCATAAATGGCTCCTTTTT
GGCTACTGACACGGGCGGTATCGAAGGTATCGATGGTATTGATGG
BS05280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-PA | 1932 | CG3679-RA | 1054..1932 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-RB | 3215 | CG3679-RB | 1174..2053 | 895..16 | 4400 | 100 | Minus |
| CG3679-RA | 2760 | CG3679-RA | 1174..2053 | 895..16 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16305336..16306215 | 895..16 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:14:34 has no hits.
BS05280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:49 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-PA | 1054..1932 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:53 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-PA | 1054..1932 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:02:31 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 1174..2053 | 16..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:14:31 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 1174..2053 | 16..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:14:31 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16305336..16306215 | 16..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:02:31 Download gff for
BS05280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16199369..16200248 | 16..895 | 100 | | Minus |
BS05280.5prime Sequence
891 bp (826 high quality bases) assembled on 2005-12-02
> BS05280.5prime
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCCAATCAACTATACCATCGCTA
TACTCATACACCCCGCCAGGAACATTCGATCTCGAACTTCA
BS05280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-PA | 1932 | CG3679-RA | 1..847 | 17..863 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-RB | 3215 | CG3679-RB | 121..995 | 17..891 | 4315 | 99.7 | Plus |
| CG3679-RA | 2760 | CG3679-RA | 121..995 | 17..891 | 4315 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16304251..16304974 | 168..891 | 3560 | 99.4 | Plus |
| X | 23542271 | X | 16303990..16304143 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:04:42 has no hits.
BS05280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:50 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:54 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:45:27 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 111..994 | 8..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:52:25 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 111..994 | 8..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:52:25 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16303990..16304142 | 17..169 | 100 | -> | Plus |
| X | 16304253..16304973 | 170..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:45:27 Download gff for
BS05280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16198023..16198175 | 17..169 | 100 | -> | Plus |
| arm_X | 16198286..16199006 | 170..890 | 99 | | Plus |
BS05280.pep Sequence
Translation from 16 to 1947
> BS05280.pep
MCDVRNLIDLTEWDEPSKEALHEEPEDSVVATNFEVPYDPFDLMEKEACI
KGMTLTSQIKEKVSSAERQYPDLESESPPVCMQTDTANASAPGSGETTQK
KRSNSSFQKQLLKLNASRSVINTPPHSRSKTEFERTILNENLQMLAAESP
LKLIEDDDVLSTSINFEEDLKMLRIPILDALNNAESKAIAEDNHGNVNKI
DVVIQEGQKSPQTTIENRSNGKSLSQLLEQLKILAHEHVERSKWHLFDSA
IESIAAVIFGPSGSCPDDRKAESTIPSLYSYTRQGTFDLELQGTKTKRSL
DANHIQEEEIDVPGSNVQSFPDAMVCSTATFDGESRLDAFDKDLLSSLPS
IPSIPSIPSIPPVSVAKKEPFMTELVDETLAQQINELLERHKLANTGISD
HEQQQGLDPRTVILLVNPSNYSSTQVAYTTSNVAKTKPMPLRETNAAGSM
RRRSSSLSIQDKSKLPREVLKSDRQVENLPPPKETKNTATVGPMGAAAAF
RQRSNSFSTPSNPSTKAYENRRTLMSSRLRNPAINESVSKPSGSVKATKP
IKPVVPIMKVTASNDSTYLNPFHPRVPETPISSRTKPAQNISCTSTPLPQ
MRTQQRRSLKPMAMTAGSGSLSNTSYSTPSIRGPSFCKKSGSG*
BS05280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-PB | 643 | CG3679-PB | 1..643 | 1..643 | 3268 | 100 | Plus |
| CG3679-PA | 643 | CG3679-PA | 1..643 | 1..643 | 3268 | 100 | Plus |
