Clone Sequence Records
BS05283.complete Sequence
2363 bp assembled on 2009-12-07
GenBank Submission: KX794107
> BS05283.complete
GAAGTTATCAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCT
CGCTGCGGATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAG
GACAACAACCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTC
CATAAACAGCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACC
AGAATCTTAGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGC
AATCTTTTGGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCT
CTCCAAGTTCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGC
GCACCGCTCATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATC
TCCGGTTCTCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAA
GTCAATCAACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGT
TCAGTCCACACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACT
GTCCAGTTGTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTAC
GGCGCACTACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATT
GGCTGGCCACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGAT
GGCAGGCCGGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACG
GGTTAAGTGGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTG
TGGTGGACTACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCC
TTTGCCTCCTTCAACGAGCACACCAATGTGACTACTGGAATTGCGTGGCA
GGGCAGCGACTCGCACTGTCTTCTGTCCATCAGCAAGGACTCCACCATTT
ACAAACATGCTTTTAAGGATGCCACGAGGCCAGCGCTGAAGGCAAATGCC
CAGGGAGCTAGCCTGGGCAGATTTGGGGACATCTCCTTTGCCAACAAGAT
CAAGGAGTATGAACCCAAGACCAGCGGTGCATCCAATACCAAGTCTTCTA
GCTTCATTCGCCGTAAGACGAATGTGGCTGGCAGCATTCAGTTCCATTTG
GACCATTCCAAAATGTACAAATTCATGGTAAACGACACGTTTTCCGGCTA
TCCCCTAAGCGAATCTGTTTCAAGACCCACCCAAGAACACGAAAGTTTTA
TTGGCTGTGCCAGGGAACTTGTTATCAGTGGGAAAAAACTATCGGAGTTA
TGCGAGCACAATGCAGAGGTTTCCAAGAAATACGGCAAACATAATGCCAC
CACATTGTGGAACTTTATCAAATTGTTCTACGGCAGCAATCACTTTGAGC
CTCCCTTCGAGCACCGCTCCTCCTTCTCGAATCAAAAGAATCCAATGAAC
TCACGACGTGCCACGCAAGTAGCCAGCGATTGGCCACAGCAGCGAACTGA
ACTAGGCCAGGATCTCAATGGAAACACGCCGGAAACAGCCCACGAAATTG
ATGTGGCGAATGTGGACGATGATACGCTCGGCAGCAGTGGTGTGGAGCAT
CCGCCTACGAGCTCAGTGATTCTGTCCGAAACGCAAATCATCAGCGAGAT
TACCTTTGACAACTTTGAGCTCTTGCGCAATGGGTTTATCTACGTGGGTC
CCACAGAATGCCCGAAAGCTTTGGCCTTCCCCGCCCTTCATCACGATGTG
CAGGCTGCACGACCACAACTGGATCTCAAGGCGTCCGATCACGAAAAGTC
ACCTCCACCGCATGTTCCCACTGTCCTAAAAGTCAGCCATGTCCCGCCCA
TACCCATGTGGGAACCGCATAAGTTCGTCTCCGATGCCCTCATGCTAATG
AACGATGTGGGCGATGTGCAAACAGCTCTGACAGTCCTTATAGCGCTGGG
AGAAGCTCGGAAGCTCCTGCCCATTGACGATGCATTGGTGGAGCACTGGT
TTTACACCTACGTGGACCAGCTGCATCGCTATGAGCTGTGGAACGAGGCC
TGCGAGGTTATCAACCGCTCCTGGCTGAGATCGGTGCAGCAGCTCAACCA
GCACTCGACCGCCATGCACACGAACTGTGGAGAGTGTGGACGTCCAATGG
GCGGCAAGGTGGGATGGTACTGCGACAAGTGCAAGTCCATGCAGTCCGCC
AAGTGCTGCGTCTGCGGTCTGATCGTCCGGGGAGTCTACGCCTGGTGCCA
AGGATGCTCCCACGGCGGTCACATAGAGCACCTGCAGAAGTACTTTGCCA
AACACTCCAAGTGCCCCAAGTGCGGACACCTTTGCGCGTACTCATGAAAG
CTTTCTAGACCAT
BS05283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RB | 2331 | CG7609-PB | 1..2331 | 17..2347 | 11655 | 100 | Plus |
| CG7609-RC | 2334 | CG7609-PC | 1..2334 | 17..2347 | 11590 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RB | 2699 | CG7609-RB | 94..2424 | 17..2347 | 11655 | 100 | Plus |
| CG7609-RC | 2702 | CG7609-RC | 94..2427 | 17..2347 | 11590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 774..135 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29742919..29743377 | 1804..1346 | 2295 | 100 | Minus |
| 3R | 32079331 | 3R | 29742247..29742604 | 2347..1990 | 1790 | 100 | Minus |
| 3R | 32079331 | 3R | 29743789..29744121 | 1107..775 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 29742666..29742852 | 1991..1805 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 29743434..29743591 | 1346..1189 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 134..17 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 29743651..29743732 | 1189..1108 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:04:19 has no hits.
BS05283.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:14 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 70..2399 | 17..2346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:08 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 94..2423 | 17..2346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:14 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 70..2399 | 17..2346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:22 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 94..2423 | 17..2346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:22 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29742248..29742603 | 1991..2346 | 100 | <- | Minus |
| 3R | 29742667..29742852 | 1805..1990 | 100 | <- | Minus |
| 3R | 29742919..29743377 | 1346..1804 | 100 | <- | Minus |
| 3R | 29743435..29743590 | 1190..1345 | 100 | <- | Minus |
| 3R | 29743651..29743732 | 1108..1189 | 100 | <- | Minus |
| 3R | 29743789..29744121 | 775..1107 | 100 | <- | Minus |
| 3R | 29744184..29744823 | 135..774 | 100 | <- | Minus |
| 3R | 29744882..29744999 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:08 Download gff for
BS05283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25569157..25569312 | 1190..1345 | 100 | <- | Minus |
| arm_3R | 25569373..25569454 | 1108..1189 | 100 | <- | Minus |
| arm_3R | 25567970..25568325 | 1991..2346 | 100 | <- | Minus |
| arm_3R | 25568389..25568574 | 1805..1990 | 100 | <- | Minus |
| arm_3R | 25568641..25569099 | 1346..1804 | 100 | <- | Minus |
| arm_3R | 25569511..25569843 | 775..1107 | 100 | <- | Minus |
| arm_3R | 25569906..25570545 | 135..774 | 100 | <- | Minus |
| arm_3R | 25570604..25570721 | 17..134 | 100 | | Minus |
BS05283.3prime Sequence
854 bp (853 high quality bases) assembled on 2005-12-02
> BS05283.3prime
ATGGTCTAGAAAGCTTTCATGAGTACGCGCAAAGGTGTCCGCACTTGGGG
CACTTGGAGTGTTTGGCAAAGTACTTCTGCAGGTGCTCTATGTGACCGCC
GTGGGAGCATCCTTGGCACCAGGCGTAGACTCCCCGGACGATCAGACCGC
AGACGCAGCACTTGGCGGACTGCATGGACTTGCACTTGTCGCAGTACCAT
CCCACCTTGCCGCCCATTGGACGTCCACACTCTCCACAGTTCGTGTGCAT
GGCGGTCGAGTGCTGGTTGAGCTGCTGCACCGATCTCAGCCAGGAGCGGT
TGATAACCTCGCAGGCCTCGTTCCACAGCTCATAGCGATGCAGCTGGTCC
ACGTAGGTGTAAAACCAGTGCTCCACCAATGCATCGTCAATGGGCAGGAG
CTTCCGAGCTTCTCCCAGCGCTATAAGGACTGTCAGAGCTGTTTGCACAT
CGCCCACATCGTTCATTAGCATGAGGGCATCGGAGACGAACTTATGCGGT
TCCCACATGGGTATGGGCGGGACATGGCTGACTTTTAGGACAGTGGGAAC
ATGCGGTGGAGGTGACTTTTCGTGATCGGACGCCTTGAGATCCAGTTGTG
GTCGTGCAGCCTGCACATCGTGATGAAGGGCGGGGAAGGCCAAAGCTTTC
GGGCATTCTGTGGGACCCACGTAGATAAACCCATTGCGCAAGAGCTCAAA
GTTGTCAAAGGTAATCTCGCTGATGATTTGCGTTTCGGACAGAATCACTG
AGCTCGTAGGCGGATGCTCCACACCACTGCTGCCGAGCGTATCATCGTCC
ACATTCGCCACATCAATTTCGTGGGCTGTTTCCGGCGTGTTTCCATTGAG
ATCC
BS05283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PB | 2331 | CG7609-RB | 1494..2331 | 854..17 | 4190 | 100 | Minus |
| CG7609-PA | 1797 | CG7609-RA | 1494..1788 | 854..560 | 1475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RC | 2702 | CG7609-RC | 1590..2427 | 854..17 | 4190 | 100 | Minus |
| CG7609-RB | 2699 | CG7609-RB | 1587..2424 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29742247..29742604 | 17..374 | 1790 | 100 | Plus |
| 3R | 32079331 | 3R | 29742919..29743213 | 560..854 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 29742666..29742852 | 373..559 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:54:00 has no hits.
BS05283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:53 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1494..2331 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:33:58 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1494..2331 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:41:36 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 1587..2424 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:23 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 1587..2424 | 17..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:23 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29742247..29742603 | 17..373 | 100 | <- | Plus |
| 3R | 29742667..29742852 | 374..559 | 100 | <- | Plus |
| 3R | 29742919..29743213 | 560..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:41:36 Download gff for
BS05283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25567969..25568325 | 17..373 | 100 | <- | Plus |
| arm_3R | 25568389..25568574 | 374..559 | 100 | <- | Plus |
| arm_3R | 25568641..25568935 | 560..854 | 100 | | Plus |
BS05283.5prime Sequence
891 bp (821 high quality bases) assembled on 2005-12-02
> BS05283.5prime
GAAGTTATCAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCT
CGCTGCGGATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAG
GACAACAACCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTC
CATAAACAGCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACC
AGAATCTTAGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGC
AATCTTTTGGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCT
CTCCAAGTTCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGC
GCACCGCTCATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATC
TCCGGTTCTCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAA
GTCAATCAACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGT
TCAGTCCACACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACT
GTCCAGTTGTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTAC
GGCGCACTACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATT
GGCTGGCCACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGAT
GGCAGGCCGGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACG
GGTTAAGTGGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTG
TGGTGGACTACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCC
TTTTGCCTCCTTCAACGAGCACACCAATGTGACTACTGGAA
BS05283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PA | 1797 | CG7609-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG7609-PB | 2331 | CG7609-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG7609-PA | 1797 | CG7609-RA | 835..874 | 852..891 | 200 | 100 | Plus |
| CG7609-PB | 2331 | CG7609-RB | 835..874 | 852..891 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RC | 2702 | CG7609-RC | 94..967 | 17..891 | 4350 | 99.9 | Plus |
| CG7609-RB | 2699 | CG7609-RB | 94..967 | 17..891 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 774..135 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 134..17 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 29744006..29744121 | 891..775 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:51:01 has no hits.
BS05283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:54 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PA | 1..872 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:00 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1..872 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:48 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..967 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:53 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..967 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:53 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29744006..29744121 | 775..891 | 99 | <- | Minus |
| 3R | 29744184..29744823 | 135..774 | 100 | <- | Minus |
| 3R | 29744882..29745000 | 17..134 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:48 Download gff for
BS05283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25569728..25569843 | 775..891 | 99 | <- | Minus |
| arm_3R | 25569906..25570545 | 135..774 | 100 | <- | Minus |
| arm_3R | 25570604..25570722 | 17..134 | 99 | <- | Minus |
BS05283.pep Sequence
Translation from 16 to 2346
> BS05283.pep
MPDSVEDTSTISLRICLEGHANALALNKDNNQIALAGRSLLKVYSINSNG
FTESCNMRGKNQNLSYSANDVAWSTLDSNLLATAATNGVVSVWDLSKFGR
QKQLLVYNEHERTAHTVTFHSSEPNILISGSQDGTIKCFDIRSDKSINTY
FCNSESVRDVKFSPHTQNIFSAVSENGTVQLWDMRKWDKCMVQFTAHYGP
VYTCDWHPTRNWLATGSRDKQIKVWNMDGRPGLEHTIHTIAVVGRVKWRP
ERTYHIASCALVVDYSVHVWDIRRPYIPFASFNEHTNVTTGIAWQGSDSH
CLLSISKDSTIYKHAFKDATRPALKANAQGASLGRFGDISFANKIKEYEP
KTSGASNTKSSSFIRRKTNVAGSIQFHLDHSKMYKFMVNDTFSGYPLSES
VSRPTQEHESFIGCARELVISGKKLSELCEHNAEVSKKYGKHNATTLWNF
IKLFYGSNHFEPPFEHRSSFSNQKNPMNSRRATQVASDWPQQRTELGQDL
NGNTPETAHEIDVANVDDDTLGSSGVEHPPTSSVILSETQIISEITFDNF
ELLRNGFIYVGPTECPKALAFPALHHDVQAARPQLDLKASDHEKSPPPHV
PTVLKVSHVPPIPMWEPHKFVSDALMLMNDVGDVQTALTVLIALGEARKL
LPIDDALVEHWFYTYVDQLHRYELWNEACEVINRSWLRSVQQLNQHSTAM
HTNCGECGRPMGGKVGWYCDKCKSMQSAKCCVCGLIVRGVYAWCQGCSHG
GHIEHLQKYFAKHSKCPKCGHLCAYS*
BS05283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PB | 776 | CG7609-PB | 1..776 | 1..776 | 4202 | 100 | Plus |
| CG7609-PC | 777 | CG7609-PC | 1..777 | 1..776 | 4190 | 99.9 | Plus |
| Pex7-PB | 339 | CG6486-PB | 36..323 | 35..309 | 236 | 26.7 | Plus |
| Pex7-PA | 339 | CG6486-PA | 36..323 | 35..309 | 236 | 26.7 | Plus |
| wds-PB | 361 | CG17437-PB | 63..357 | 12..270 | 184 | 26.1 | Plus |
