Clone Sequence Records
BS05284.complete Sequence
2792 bp assembled on 2009-12-07
GenBank Submission: KX796195
> BS05284.complete
GAAGTTATCAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGC
TGAAGCCGGCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAG
GATGAAAAGAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGA
CGAGGACCAGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGC
AGGAGCCGGATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAA
TTGATCAGAGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAA
GTTCATGCGCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGC
CCAATGAGCAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCG
ATGACCATGGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGA
TCGCAAGCAGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGT
CTGGCGAAATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTA
CAGCTCATCGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAA
TGCCGAGGCTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACC
TGCTGAGCGACTTTGTGGACGAGTCGGCCTATCCCCGCGTCTGTCTCTAT
CTGCAGTCCTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCT
GGAAACCGCGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCA
TGCGACTGGCGTTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTC
AAGGAGCCCAAGGAGCCGGCCATGCAGAAGCAGCTGGCCTTTATGCTGGC
CCGCCAACAGATTTGCCTGGAGCTGGATGAATTGGTGCCGGACTACGATG
ATCTCATGGAGATCATGTCGAATGCTAATCTGAACAAGCATTTCCTCAAT
CTGGCTCGCGAACTGGACATCATGGAGCCCAAAACGCCTGAGGACATTTA
CAAGTCGCATTTGGACAACTCGCGCTCCCGCTTTGCATCCATCCAGGTAG
ACTCTGCCAAGCAAAATCTGGCCGCTAGCTTTGTAAATGGTTTTGTTAAC
GCCGGTTTCGGTGTGGACAAGTTGCTGTCGGAAGACGGAAACAAATGGTT
GTACAAGAACAAGGAGCACGGCATGCTCTCGGCCACCGCATCGCTGGGTT
TGATACTTCTGTGGGATGTGGATGGTGGTCTGACCATGATCGATAAGTAC
TTGTACTCCACCGATGACAACATCAAGTCCGGCGCTTTGCTGGCTTGCGG
AATCGTCAACTGCGGCATCCGTAACGAAGTCGATCCGGCTCATGCTCTGC
TCTCCGATTATATCGACAACCAGAACTCCTGCATGCGCGTTGGCGCCATC
CTCGGTCTGGGCATCGCCTACGCTGGCTCCAATCGCTCCATTGTGATCGA
CACCCTGAAGACGGTCTTCTCGTTTGGCAGCAACAACAAGAGTTCGGCCA
GCGTGGAGATATTGGGTATTACGGCTCTGTCGCTGGGTCTCATCAGTGTT
GGTTCGTGCAATTCGGAGATCACCGAGATCTTGCTGCAGACGATTATGGG
TCTGACCAAGGCCGATCTGAAGGACACCTACACGAGGTTCCTGTTTTTGG
GTCTGGGTCTGCTTTACTTGGGCCGCCAAAAGTCCACCGAAGCCGTGATG
ATGACCTTGGAGGTTTTGGAAGAGCCGTACCGCAGCATGGCCACTACCAT
GGTGGACATTTGCGCATACGCTGGTACTGGCAACGTCCTCAAGATCCAAC
AGCTGCTCCACATCTGCTCCGATCACTACGAGACGTCCAGTGCCGATGAC
GAGAAGGAAAAGAGCAAGAAGGACAAGGGCAAGGATAAGGAAAAGGAGAA
GGAGAAAGAGAAGGAAAAGGAACGCGAGAAGGACTTGTCGGCCACCCAAT
CGATCGCCGTGCTGGGAATTGCCCTGATCGCCATGGGCGAGGACATTGGT
GCCGAAATGGCATACCGCTCGTTTGGAAACCTGCTGCGCTATTGCGAGCC
AGCCATTCGTCGGGCCGTACCACTGGCATTGGGCCTGATATCCGCCTCCA
ATCCCAAGCTGAACATCATCGACACGCTGAGCAAGTTCTCGCACGATAGC
GACGCCGAGGTGGCCCACAATGCGATCTTCGCCATGGGCTTGGTGGGCGC
CGGCACGAATAACGCTCGGCTGGCCTCCATGCTACGCCAGTTGGCGCAGT
ACCATTCTAAGGATCCCAGCAATCTGTTCATGGTGCGCATCGCCCAGAGC
TTGACGCACTTGGGCAAGGGCACGCTCTCGCTGAGTCCCTACCACAGCGA
TAGGCAGCTGATGAACCCCATGGCCGTCGCTGGACTGATGGCTACGCTGG
TTTCCCTGCTGGACGTGAAGAACCTGATACTGAACCGATCGCACTATCTG
CTCTACACACTGGTGCCTGCCATGCAGGCTCGCATGCTGATCACCTTCGA
TGAGGAGCTCAATCAGCTGCAGGTGCCCGTGCGCGTCGGCATTGCCATCG
ATGTGGTCGGCCAGGCAGGCAAGCCGAAGACCATCACCGGCTTCCAAACG
CACACCACGCCCGTCCTGCTGGCCATTGGCGAGCGCGCCGAGCTGGCCAC
CGATGAGTATCTGGCCCTCACTCCGGTCATGGAGGGCTTCGTTATACTGA
AAAAGAACCCAAATTTTGTGAAATAGAAGCTTTCTAGACCAT
BS05284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 2760 | CG7762-PA | 1..2760 | 17..2776 | 13800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..2903 | 16..2779 | 13820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19917114 | 16..1940 | 9625 | 100 | Plus |
| 3L | 28110227 | 3L | 19917181..19918022 | 1938..2779 | 4210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:48:00 has no hits.
BS05284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:09 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 136..2889 | 17..2770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:10 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 141..2894 | 17..2770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:39 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 136..2889 | 17..2770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:33 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 141..2894 | 17..2770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:33 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19915191..19917113 | 17..1939 | 100 | -> | Plus |
| 3L | 19917183..19918013 | 1940..2770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:10 Download gff for
BS05284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908291..19910213 | 17..1939 | 100 | -> | Plus |
| arm_3L | 19910283..19911113 | 1940..2770 | 100 | | Plus |
BS05284.3prime Sequence
924 bp (792 high quality bases) assembled on 2005-12-02
> BS05284.3prime
ATGGTCTAGAAAGCTTCTATTTCACAAAATTTGGGTTCTTTTTCAGTATA
ACGAAGCCCTCCATGACCGGAGTGAGGGCCAGATACTCATCGGTGGCCAG
CTCGGCGCGCTCGCCAATGGCCAGCAGGACGGGCGTGGTGTGCGTTTGGA
AGCCGGTGATGGTCTTCGGCTTGCCTGCCTGGCCGACCACATCGATGGCA
ATGCCGACGCGCACGGGCACCTGCAGCTGATTGAGCTCCTCATCGAAGGT
GATCAGCATGCGAGCCTGCATGGCAGGCACCAGTGTGTAGAGCAGATAGT
GCGATCGGTTCAGTATCAGGTTCTTCACGTCCAGCAGGGAAACCAGCGTA
GCCATCAGTCCAGCGACGGCCATGGGGTTCATCAGCTGCCTATCGCTGTG
GTAGGGACTCAGCGAGAGCGTGCCCTTGCCCAAGTGCGTCAAGCTCTGGG
CGATGCGCACCATGAACAGATTGCTGGGATCCTTAGAATGGTACTGCGCC
AACTGGCGTAGCATGGAGGCCAGCCGAGCGTTATTCGTGCCGGCGCCCAC
CAAGCCCATGGCGAAGATCGCATTGTGGGCCACCTCGGCGTCGCTATCGT
GCGAGAACTTGCTCAGCGTGTCGATGATGTTCAGCTTGGGATTGGAGGCG
GATATCAGGCCCAATGCCAGTGGTACGGCCCGACGAATGGCTGGCTCGCA
ATAGCGCAGCAGGTTTCCAAACGAGCGGTATGCCATTTCGGCACCAATGT
CCTCGCCCATGGCGATCAGGGCAATTCCCAGCACGGCGATCGATTGGGTG
GCCGAACAGTCCTTCTCGCGTTCCTTTTCCTTCTCTTTCTCCTTCTCCTT
TTTCCTATCCTTGCCCTTGTCCTTCTTGCTCTTTTCTTTCTCGTCATCGG
CACTGGACGTCTCGTAGTGATCGG
BS05284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7762-PA | 2760 | Rpn1-RA | 1853..2760 | 924..17 | 4415 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 1993..2903 | 924..14 | 4480 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19917184..19918022 | 852..14 | 4165 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19917043..19917111 | 924..856 | 330 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:58:40 has no hits.
BS05284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:55 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-PA | 1853..2760 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:02 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7762-PA | 1853..2760 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:31:02 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 1993..2903 | 14..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:57:22 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 1993..2903 | 14..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:57:22 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19917043..19917113 | 855..924 | 97 | -> | Minus |
| 3L | 19917183..19918022 | 14..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:31:02 Download gff for
BS05284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19910143..19910213 | 855..924 | 97 | -> | Minus |
| arm_3L | 19910283..19911122 | 14..854 | 99 | | Minus |
BS05284.5prime Sequence
923 bp (749 high quality bases) assembled on 2005-12-02
> BS05284.5prime
GAAGTTATCAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGC
TGAAGCCGGCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAG
GATGAAAAGAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGA
CGAGGACCAGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGC
AGGAGCCGGATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAA
TTGATCAGAGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAA
GTTCATGCGCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGC
CCAATGAGCAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCG
ATGACCATGGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGA
TCGCAAGCAGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGT
CTGGCGAAATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTA
CAGCTCATCGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAA
TGCCGAGGCTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACC
TGCTGAGCGACTTTGTGGACGAGTCGGCCTATCCCCGCGTCTGTCTCTAT
CTGCAGTCCTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCT
GGAAACCGCGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCA
TGCGACTGGCGTTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTC
AAGGAGCCCAAGGAGCCGGCCATGCAGAAGCAGCTGGGCTTTATGCTGGC
CCGCCAACAGATTTGCCTGGAGC
BS05284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7762-PA | 2760 | Rpn1-RA | 1..907 | 17..923 | 4510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..1047 | 16..923 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19916097 | 16..923 | 4525 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:14:59 has no hits.
BS05284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:56 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:03 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7762-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:55 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1047 | 16..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:50 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1047 | 16..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:50 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19915190..19916097 | 16..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:55 Download gff for
BS05284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908290..19909197 | 16..923 | 99 | | Plus |
BS05284.pep Sequence
Translation from 16 to 2775
> BS05284.pep
MTGETKLEKKPLKPAASEGDAKDPKAKKDEKKDGKDKEQQPELSDEDQQL
QEELELLVQHLQEPDAKLYQPTLESMAKLIRASTTSMTSVPKPLKFMRPH
YETMKTVYKHMPNEQARQLCADIISVLSMTMGSGKDCLAYRFLCDRKQRI
GDWGHEYVRHLSGEISAHYHDTTGDFRVQLIELVKQIIPYNMEHNAEADA
CDLLIEIDHLHLLSDFVDESAYPRVCLYLQSCYPYVPDPDNTIILETALQ
LSRKFNQYTQAMRLALMLNDMDKIGEIFKEPKEPAMQKQLAFMLARQQIC
LELDELVPDYDDLMEIMSNANLNKHFLNLARELDIMEPKTPEDIYKSHLD
NSRSRFASIQVDSAKQNLAASFVNGFVNAGFGVDKLLSEDGNKWLYKNKE
HGMLSATASLGLILLWDVDGGLTMIDKYLYSTDDNIKSGALLACGIVNCG
IRNEVDPAHALLSDYIDNQNSCMRVGAILGLGIAYAGSNRSIVIDTLKTV
FSFGSNNKSSASVEILGITALSLGLISVGSCNSEITEILLQTIMGLTKAD
LKDTYTRFLFLGLGLLYLGRQKSTEAVMMTLEVLEEPYRSMATTMVDICA
YAGTGNVLKIQQLLHICSDHYETSSADDEKEKSKKDKGKDKEKEKEKEKE
KEREKDLSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRA
VPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNA
RLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGTLSLSPYHSDRQLMN
PMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDEELNQ
LQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLA
LTPVMEGFVILKKNPNFVK*
BS05284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-PA | 919 | CG7762-PA | 1..919 | 1..919 | 4689 | 100 | Plus |
| Rpn2-PC | 1020 | CG11888-PC | 333..620 | 325..616 | 187 | 25.2 | Plus |
| Rpn2-PA | 1020 | CG11888-PA | 333..620 | 325..616 | 187 | 25.2 | Plus |
| Rpn2-PB | 1029 | CG11888-PB | 333..620 | 325..616 | 187 | 25.2 | Plus |
