Clone Sequence Records
BS05285.3prime Sequence
866 bp (843 high quality bases) assembled on 2005-12-02
> BS05285.3prime
ATGGTCTAGAAAGCTTTTACTCCTCCTCTTCGCCATCGAGAATGGCCTTG
AAGCTGAACGGCTGGAAGGCGTAGCCCATTCCCTCGTAGAACTTGCTCAT
GAACTCCACCCAGTGCAGACGCAGAGTGTGCAGGAAGGCGGACAGACCCT
CCATGAGGACCAGGATAGCCAGGGTGAACAAGCACCAGGCGCCGAAGATG
ATGAACAGACCAATGGCACCGCCCACGCCGGACATCTTAAGGCCCAGGGA
CAACACCATTTGCCACAGCACCTCGGAGAGCTGGGCGTGAGCCAGGGACA
GAGCCCAGAGACGCAGATAGGACGCCGTGTGCGAGATGGTACTGAGCACA
TATTCGATGGTGTGGATGGCTTGATGGATGTAGATTTCGCTCATGGGCTC
ATCGTCATGGCCATGGGCACCCCCGGCATTCTCCTCGTTTCCAGAGAATC
CTGTGGGCAGAGGAGTCTCGCCTTCGGCCAGTTCAATGTTGCCGGTCAAC
TGACCATTGTGATTGGCATGAGCCTTGTTTTTGCGAGTGAACTTGATGTA
CAGGGGCTTGCCCAGAAGCATCCAAGGAATGCAGCACAGGGCGATGAGCA
CAAAGGCCTTCTGCAACTGGGGCTGTGACTCGAACATGAACTCGTTGCAA
CCCTTTGGTGGCTCAGTGTTCTTGAACAGCATCATGTTGATGAACATGAT
CAACACGGAGGGAGCGCATCCAGGAGTTTCTGGCTGGAAGCTAGTCCTAG
CGTTATAGCTGAACCACTTGAAGAACATCATGAACACCATGTAGCCGAAG
AGCAGTAGCAGGAACAGAATTTGGGGCACGAACTCCAGGAAAATGGAGGC
ATAACGCTTGAAGTGG
BS05285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18617-PB | 2505 | Vha100-2-RB | 1656..2505 | 866..17 | 4250 | 100 | Minus |
| CG18617-PA | 2505 | Vha100-2-RA | 1656..2505 | 866..17 | 4250 | 100 | Minus |
| CG12602-PA | 2445 | CG12602-RA | 2323..2381 | 139..81 | 195 | 93.2 | Minus |
| CG7678-PA | 2535 | CG7678-RA | 2152..2289 | 400..263 | 165 | 84.7 | Minus |
| CG7678-PA | 2535 | CG7678-RA | 2435..2465 | 117..87 | 155 | 100 | Minus |
| CG12602-PA | 2445 | CG12602-RA | 1948..1987 | 583..544 | 150 | 95 | Minus |
| CG12602-PA | 2445 | CG12602-RA | 2082..2114 | 380..348 | 140 | 96.9 | Minus |
| CG1709-PH | 2478 | Vha100-1-RH | 2323..2400 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PF | 2502 | Vha100-1-RF | 2347..2424 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PA | 2502 | Vha100-1-RA | 2347..2424 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PB | 2511 | Vha100-1-RB | 2356..2433 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PD | 2511 | Vha100-1-RD | 2356..2433 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PG | 2553 | Vha100-1-RG | 2398..2475 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PC | 2568 | Vha100-1-RC | 2413..2490 | 163..86 | 140 | 87.1 | Minus |
| CG1709-PE | 2568 | Vha100-1-RE | 2413..2490 | 163..86 | 140 | 87.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 3044 | CG18617-RA | 1893..2743 | 866..16 | 4255 | 100 | Minus |
| Vha100-2-RB | 3006 | CG18617-RB | 1855..2705 | 866..16 | 4255 | 100 | Minus |
| Vha100-4-RA | 2728 | CG7678-RA | 2239..2593 | 400..46 | 710 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18390624..18390890 | 16..282 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 18391258..18391517 | 517..776 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 18390962..18391196 | 283..517 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 18391576..18391667 | 775..866 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 18386976..18387212 | 46..282 | 405 | 78.1 | Plus |
| 3R | 32079331 | 3R | 18387269..18387386 | 283..400 | 305 | 83.9 | Plus |
| 2L | 23513712 | 2L | 11743618..11743727 | 394..285 | 265 | 82.7 | Minus |
| 3R | 32079331 | 3R | 18387721..18387901 | 670..850 | 245 | 75.7 | Plus |
| 2L | 23513712 | 2L | 11743240..11743320 | 844..764 | 240 | 86.4 | Minus |
Blast to na_te.dros performed 2015-02-02 18:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1108..1163 | 141..196 | 118 | 67.9 | Plus |
BS05285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:57 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18617-PA | 1656..2505 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:05 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18617-PA | 1656..2505 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:13:02 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 1855..2705 | 16..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:54 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 1855..2705 | 16..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:54 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18390624..18390890 | 16..282 | 100 | <- | Plus |
| 3R | 18390962..18391196 | 283..517 | 100 | <- | Plus |
| 3R | 18391259..18391517 | 518..776 | 100 | <- | Plus |
| 3R | 18391578..18391667 | 777..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:13:02 Download gff for
BS05285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14216346..14216612 | 16..282 | 100 | <- | Plus |
| arm_3R | 14216684..14216918 | 283..517 | 100 | <- | Plus |
| arm_3R | 14216981..14217239 | 518..776 | 100 | <- | Plus |
| arm_3R | 14217300..14217389 | 777..866 | 100 | | Plus |
BS05285.5prime Sequence
915 bp (842 high quality bases) assembled on 2005-12-02
> BS05285.5prime
GAAGTTATCAGTCGACATGGGGGACATGTTCCGTAGTGAGGAGATGGCAC
TCTGCCAGATGTTCATTCAGCCGGAGGCCGCGTATACCTCCGTATCTGAG
CTGGGCGAAACCGGCTGCGTGCAGTTCCGCGACTTGAATGTGAACGTGAA
CGCCTTCCAGCGCAAGTTCGTCACCGAGGTGCGTCGCTGCGATGAGCTGG
AGCGCAAGATCCGCTACATCGAGACGGAGATCAAGAAGGACGGCATCGTC
CTGCCCGACATCCAGGATGACATTCCGCGTGCGCCCAATCCACGCGAGAT
CATCGATCTGGAGGCGCATCTGGAGAAGACCGAGTCGGAGATGATCGAGC
TGGCCCAGAACGAGGTGAACATGAAGTCCAACTATCTGGAGCTGACCGAG
CTGCGCAAGGTGCTGGAGAACACGCAGGGCTTCTTCTCCGACCAGGAGGT
TCTCAATCTGGACTCCTCCAACCGAGCTGGAGGAGACAACGATGCTGCTG
CTCAACACCGTGGCCGGCTTGGATTCGTTGCCGGTGTAATTAACCGGGAG
CGAGTGTTTGCCTTTGAGCGTATGCTGTGGCGCATCTCCAGGGGCAATGT
CTTCCTCAAGCGCTCCGATCTGGACGAGCCGCTGAACGATCCGGCCACCG
GACATCCCATCTACAAGACCGTCTTCGTGGCCTTCTTCCAGGGCGAGCAA
CTGAAGAACCGTATCAAGAAGGTGTGCACTGGCTTCCACGCCTCGCTGTA
TCCCTGTCCCAGCTCGCACAACGAGCGCGAGGAAATGGTTCGCAATGTGC
GCACCCGCCTGGAGGATCTGAAGCTGGTCCTTAGCCAGACGGAGGATCAT
CGTAGCCGCGTCCTGGCCACCGTGTCCAAGAATCTGCCCTCGTGGTCGAT
CATGGTCAAGAGGAT
BS05285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18617-PB | 2505 | Vha100-2-RB | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG18617-PA | 2505 | Vha100-2-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG12602-PA | 2445 | CG12602-RA | 661..702 | 665..706 | 160 | 95.2 | Plus |
| CG1709-PH | 2478 | Vha100-1-RH | 124..168 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PF | 2502 | Vha100-1-RF | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PA | 2502 | Vha100-1-RA | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PB | 2511 | Vha100-1-RB | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PD | 2511 | Vha100-1-RD | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PG | 2553 | Vha100-1-RG | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PC | 2568 | Vha100-1-RC | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG1709-PE | 2568 | Vha100-1-RE | 148..192 | 164..208 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 3044 | CG18617-RA | 238..1136 | 17..915 | 4480 | 99.9 | Plus |
| Vha100-2-RB | 3006 | CG18617-RB | 200..1098 | 17..915 | 4480 | 99.9 | Plus |
| Vha100-1-RJ | 2950 | CG1709-RJ | 115..486 | 29..403 | 375 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18392424..18393205 | 915..134 | 3895 | 99.9 | Minus |
| 3R | 32079331 | 3R | 18393272..18393388 | 133..17 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 345 | 76.8 | Plus |
| 3R | 32079331 | 3R | 29132141..29132239 | 149..247 | 315 | 87.9 | Plus |
| 3R | 32079331 | 3R | 18388745..18388923 | 841..663 | 295 | 77.7 | Minus |
| 2L | 23513712 | 2L | 11742211..11742404 | 665..858 | 295 | 76.8 | Plus |
Blast to na_te.dros performed 2015-02-09 23:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 24..71 | 534..485 | 110 | 72 | Minus |
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4781..4828 | 534..485 | 110 | 72 | Minus |
BS05285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:06:59 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18617-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:07 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18617-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:10 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 192..1098 | 8..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:32 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 192..1098 | 8..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:32 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18392424..18393205 | 134..915 | 99 | <- | Minus |
| 3R | 18393272..18393396 | 8..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:10 Download gff for
BS05285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14218146..14218927 | 134..915 | 99 | <- | Minus |
| arm_3R | 14218994..14219118 | 8..133 | 96 | | Minus |
BS05285.complete Sequence
2537 bp assembled on 2009-08-24
GenBank Submission: KX798011
> BS05285.complete
GAAGTTATCAGTCGACATGGGGGACATGTTCCGTAGTGAGGAGATGGCAC
TCTGCCAGATGTTCATTCAGCCGGAGGCCGCGTATACCTCCGTATCTGAG
CTGGGCGAAACCGGCTGCGTGCAGTTCCGCGACTTGAATGTGAACGTGAA
CGCCTTCCAGCGCAAGTTCGTCACCGAGGTGCGTCGCTGCGATGAGCTGG
AGCGCAAGATCCGCTACATCGAGACGGAGATCAAGAAGGACGGCATCGTC
CTGCCCGACATCCAGGATGACATTCCGCGTGCGCCCAATCCACGCGAGAT
CATCGATCTGGAGGCGCATCTGGAGAAGACCGAGTCGGAGATGATCGAGC
TGGCCCAGAACGAGGTGAACATGAAGTCCAACTATCTGGAGCTGACCGAG
CTGCGCAAGGTGCTGGAGAACACGCAGGGCTTCTTCTCCGACCAGGAGGT
TCTCAATCTGGACTCCTCCAACCGAGCTGGAGGAGACAACGATGCTGCTG
CTCAACACCGTGGCCGGCTTGGATTCGTTGCCGGTGTAATTAACCGGGAG
CGAGTGTTTGCCTTTGAGCGTATGCTGTGGCGCATCTCCAGGGGCAATGT
CTTCCTCAAGCGCTCCGATCTGGACGAGCCGCTGAACGATCCGGCCACCG
GACATCCCATCTACAAGACCGTCTTCGTGGCCTTCTTCCAGGGCGAGCAA
CTGAAGAACCGTATCAAGAAGGTGTGCACTGGCTTCCACGCCTCGCTGTA
TCCCTGTCCCAGCTCGCACAACGAGCGCGAGGAAATGGTTCGCAATGTGC
GCACCCGCCTGGAGGATCTGAAGCTGGTCCTTAGCCAGACGGAGGATCAT
CGTAGCCGCGTCCTGGCCACCGTGTCCAAGAATCTGCCCTCGTGGTCGAT
CATGGTCAAGAAGATGAAGGCCATTTACCACACGCTGAATCTGTTCAACA
TGGACGTGACCAAGAAGTGCCTGATTGGCGAGTGTTGGGTGCCCACCAAT
GATTTGCCCGTTGTCCAAAAGGCTCTGTCCGATGGATCTGCTGCAGTGGG
CAGCACCATACCCTCGTTCCTGAACGTGATCGACACCAACGAGCAGCCGC
CGACCTTTAACAGGACTAACAAGTTTACCCGTGGCTTCCAGAATCTGATT
GATGCCTACGGAGTGGCCTCGTACAGAGAGTGCAATCCCGCCCTGTACAC
CTGCATCACCTTCCCCTTCCTTTTCGCTGTGATGTTCGGCGATTTGGGTC
ACGGCCTTATTCTGGTTTTGTTTGGAGCTTGGATGGTTTTGTGCGAGCGC
AAGCTGGCTCGCATCCGCAACGGTGGTGAGATCTGGAACATCTTCTTCGG
CGGTCGCTATATCATTCTGCTGATGGGTCTGTTTGCCATGTACACTGGTT
TGGTTTACAACGATGTCTTCTCCAAGTCGATGAACCTGTTTGGATCACGT
TGGTTCAACAACTACAACACAACGACTGTCCTGACCAACCCGAATCTGCA
GTTGCCGCCCAACAGCTCCGCCGTGGGTGTCTATCCCTTCGGAATGGATC
CCGTGTGGCAGTTGGCTGATAACAAGATCATCTTCCTCAACAGTTTCAAG
ATGAAGCTCTCGATCATCTTCGGAGTGCTGCACATGGTCTTCGGCGTGTG
CATGTCGGTCGTTAACTTCACCCACTTCAAGCGTTATGCCTCCATTTTCC
TGGAGTTCGTGCCCCAAATTCTGTTCCTGCTACTGCTCTTCGGCTACATG
GTGTTCATGATGTTCTTCAAGTGGTTCAGCTATAACGCTAGGACTAGCTT
CCAGCCAGAAACTCCTGGATGCGCTCCCTCCGTGTTGATCATGTTCATCA
ACATGATGCTGTTCAAGAACACTGAGCCACCAAAGGGTTGCAACGAGTTC
ATGTTCGAGTCACAGCCCCAGTTGCAGAAGGCCTTTGTGCTCATCGCCCT
GTGCTGCATTCCTTGGATGCTTCTGGGCAAGCCCCTGTACATCAAGTTCA
CTCGCAAAAACAAGGCTCATGCCAATCACAATGGTCAGTTGACCGGCAAC
ATTGAACTGGCCGAAGGCGAGACTCCTCTGCCCACAGGATTCTCTGGAAA
CGAGGAGAATGCCGGGGGTGCCCATGGCCATGACGATGAGCCCATGAGCG
AAATCTACATCCATCAAGCCATCCACACCATCGAATATGTGCTCAGTACC
ATCTCGCACACGGCGTCCTATCTGCGTCTCTGGGCTCTGTCCCTGGCTCA
CGCCCAGCTCTCCGAGGTGCTGTGGCAAATGGTGTTGTCCCTGGGCCTTA
AGATGTCCGGCGTGGGCGGTGCCATTGGTCTGTTCATCATCTTCGGCGCC
TGGTGCTTGTTCACCCTGGCTATCCTGGTCCTCATGGAGGGTCTGTCCGC
CTTCCTGCACACTCTGCGTCTGCACTGGGTGGAGTTCATGAGCAAGTTCT
ACGAGGGAATGGGCTACGCCTTCCAGCCGTTCAGCTTCAAGGCCATTCTC
GATGGCGAAGAGGAGGAGTAAAAGCTTTCTAGACCAT
BS05285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 2505 | CG18617-PA | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| Vha100-2-RB | 2505 | CG18617-PB | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| Vha100-4-RA | 2535 | CG7678-PA | 2152..2506 | 2138..2492 | 710 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 3044 | CG18617-RA | 238..2743 | 17..2522 | 12530 | 100 | Plus |
| Vha100-2-RB | 3006 | CG18617-RB | 200..2705 | 17..2522 | 12530 | 100 | Plus |
| Vha100-4-RA | 2728 | CG7678-RA | 2239..2593 | 2138..2492 | 710 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18391576..18393205 | 1763..134 | 8150 | 100 | Minus |
| 3R | 32079331 | 3R | 18390624..18390890 | 2522..2256 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 18391258..18391517 | 2021..1762 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 18390962..18391196 | 2255..2021 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 18387721..18388267 | 1868..1322 | 650 | 74.6 | Minus |
| 3R | 32079331 | 3R | 18388332..18388923 | 1254..663 | 620 | 73.6 | Minus |
| 3R | 32079331 | 3R | 18393272..18393388 | 133..17 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 11743078..11743320 | 1532..1774 | 525 | 81.1 | Plus |
| 2L | 23513712 | 2L | 11742211..11742810 | 665..1264 | 465 | 71.8 | Plus |
| 3R | 32079331 | 3R | 18386976..18387212 | 2492..2256 | 405 | 78.1 | Minus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 345 | 76.8 | Plus |
| 3R | 32079331 | 3R | 29132141..29132239 | 149..247 | 315 | 87.9 | Plus |
| 3R | 32079331 | 3R | 18387269..18387386 | 2255..2138 | 305 | 83.9 | Minus |
| 2L | 23513712 | 2L | 11743618..11743727 | 2144..2253 | 265 | 82.7 | Plus |
| 3R | 32079331 | 3R | 29135523..29135602 | 911..990 | 235 | 86.2 | Plus |
| 2R | 25286936 | 2R | 18910300..18910433 | 1251..1118 | 235 | 78.4 | Minus |
| 3R | 32079331 | 3R | 29135940..29136065 | 1328..1453 | 225 | 78.6 | Plus |
| 3R | 32079331 | 3R | 29136147..29136266 | 1532..1648 | 205 | 80 | Plus |
| 2L | 23513712 | 2L | 11742868..11742974 | 1328..1434 | 190 | 78.5 | Plus |
| 3R | 32079331 | 3R | 29135758..29135866 | 1146..1254 | 185 | 78 | Plus |
Blast to na_te.dros performed 2014-11-28 01:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1108..1163 | 2397..2342 | 118 | 67.9 | Minus |
BS05285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:21 Download gff for
BS05285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RA | 250..2752 | 17..2519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:44 Download gff for
BS05285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 200..2702 | 17..2519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:20 Download gff for
BS05285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 200..2702 | 17..2519 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:20 Download gff for
BS05285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18393272..18393388 | 17..133 | 100 | | Minus |
| 3R | 18390627..18390890 | 2256..2519 | 100 | <- | Minus |
| 3R | 18390962..18391196 | 2021..2255 | 100 | <- | Minus |
| 3R | 18391259..18391517 | 1762..2020 | 100 | <- | Minus |
| 3R | 18391578..18393205 | 134..1761 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:44 Download gff for
BS05285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14216684..14216918 | 2021..2255 | 100 | <- | Minus |
| arm_3R | 14216349..14216612 | 2256..2519 | 100 | <- | Minus |
| arm_3R | 14216981..14217239 | 1762..2020 | 100 | <- | Minus |
| arm_3R | 14217300..14218927 | 134..1761 | 100 | <- | Minus |
| arm_3R | 14218994..14219110 | 17..133 | 100 | | Minus |
BS05285.pep Sequence
Translation from 16 to 2520
> BS05285.pep
MGDMFRSEEMALCQMFIQPEAAYTSVSELGETGCVQFRDLNVNVNAFQRK
FVTEVRRCDELERKIRYIETEIKKDGIVLPDIQDDIPRAPNPREIIDLEA
HLEKTESEMIELAQNEVNMKSNYLELTELRKVLENTQGFFSDQEVLNLDS
SNRAGGDNDAAAQHRGRLGFVAGVINRERVFAFERMLWRISRGNVFLKRS
DLDEPLNDPATGHPIYKTVFVAFFQGEQLKNRIKKVCTGFHASLYPCPSS
HNEREEMVRNVRTRLEDLKLVLSQTEDHRSRVLATVSKNLPSWSIMVKKM
KAIYHTLNLFNMDVTKKCLIGECWVPTNDLPVVQKALSDGSAAVGSTIPS
FLNVIDTNEQPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTCITFP
FLFAVMFGDLGHGLILVLFGAWMVLCERKLARIRNGGEIWNIFFGGRYII
LLMGLFAMYTGLVYNDVFSKSMNLFGSRWFNNYNTTTVLTNPNLQLPPNS
SAVGVYPFGMDPVWQLADNKIIFLNSFKMKLSIIFGVLHMVFGVCMSVVN
FTHFKRYASIFLEFVPQILFLLLLFGYMVFMMFFKWFSYNARTSFQPETP
GCAPSVLIMFINMMLFKNTEPPKGCNEFMFESQPQLQKAFVLIALCCIPW
MLLGKPLYIKFTRKNKAHANHNGQLTGNIELAEGETPLPTGFSGNEENAG
GAHGHDDEPMSEIYIHQAIHTIEYVLSTISHTASYLRLWALSLAHAQLSE
VLWQMVLSLGLKMSGVGGAIGLFIIFGAWCLFTLAILVLMEGLSAFLHTL
RLHWVEFMSKFYEGMGYAFQPFSFKAILDGEEEE*
BS05285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-PA | 834 | CG18617-PA | 1..834 | 1..834 | 4395 | 100 | Plus |
| Vha100-2-PB | 834 | CG18617-PB | 1..834 | 1..834 | 4395 | 100 | Plus |
| Vha100-4-PA | 844 | CG7678-PA | 16..844 | 4..834 | 2903 | 65.8 | Plus |
| Vha100-5-PB | 814 | CG12602-PB | 1..814 | 1..834 | 2862 | 65.3 | Plus |
| Vha100-5-PA | 814 | CG12602-PA | 1..814 | 1..834 | 2862 | 65.3 | Plus |
