Clone Sequence Records
BS05290.3prime Sequence
892 bp (790 high quality bases) assembled on 2005-12-02
> BS05290.3prime
ATGGTCTAGAAAGCTTTCACAACAGCTTCGGCTGGTTCCTGATATTCTCC
AAGTCCAGTTGAATATGTGGCGAAGGGGCGGTCGCCGCCATGGGAGATTG
TGGACACACCGGCTCCAGTTGCTCCTCGGGCAGCAGACGGTATTTTTTGA
GATACTTGTACGAAGCATTGGATATGTCGTTTGGACTCTGCGCGTGGCCT
ATGTTGTCGATCGGACGCAGTGGCTCTGGATTAGGGGACTTCGGCGACGC
CCCCAGGCGCATATCCTTCATCAACTCATCCACTGGCTGGCGCAAGTATT
TCAGCGCCAGCTCGTTCATCACCATGCTCTTCTCGGTGTTGGGCTTGGCC
AGTTGAGGGATCCGCTTCGCCTGAGGCGTATTGGCCCGGTAGCCCGTAGA
TTGGGCGATCGGCGGATGTGGTCGAGGAGACGGAAACTGAGGAATCACTC
GTGCTTGTGGCGGCGGCAATGGTTCCTCCTCCTCTGCTATGTAATCCTGC
ATAATGGGAGACAAGCGTCTACCTGCTTGATTGGTGGTCAGAATATCGCA
CTGGGTGCCAGTGGTACTGCTGGCTTTTGAAATGGCTTCGGGTTTCGCTC
GCTGCTGTTGCTCCAAAATCATCTCGCAGAGATTCCGAAGCTGTTGCTGC
TCATGGCGCACGGACTCCACAAGGGATACCAGAGCCGCCAGATCACTCTT
ATTGGCCAAGTTGCTGACGTCGATGTCGGAATAGACAACCTGNGGCAGTG
ATTTTCGCGGAGGAGATGGGTTGAAGGGATCGGTCTGTGTGCCAGCACAG
ATGGTGAGGACATCTGCGTTGGAGGAGCTGGACAAGCGCCTAGATTGATA
TGCCTGTTGCTTGGGCTCGGCATTATAGCCACCAGCATTGCA
BS05290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 388..1263 | 892..17 | 4361 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 479..1358 | 892..13 | 4389 | 99.9 | Minus |
| ana2-RB | 1429 | CG8262-RB | 479..1355 | 892..13 | 4334 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8898803..8899317 | 13..527 | 2575 | 100 | Plus |
| 2R | 25286936 | 2R | 8899367..8899733 | 526..892 | 1824 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:58:24 has no hits.
BS05290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:08 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 389..1263 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:19 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 389..1263 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:06 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 480..1363 | 7..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:01 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 480..1363 | 7..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:01 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8898798..8899315 | 7..525 | 99 | <- | Plus |
| 2R | 8899367..8899732 | 526..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:06 Download gff for
BS05290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786872..4787237 | 526..891 | 99 | | Plus |
| arm_2R | 4786303..4786820 | 7..525 | 99 | <- | Plus |
BS05290.5prime Sequence
840 bp (765 high quality bases) assembled on 2005-12-02
> BS05290.5prime
GAAGTTATCAGTCGACATGTTTGTTCCCGAAACGGAGGATATGCTGCCCA
GACTAGCGCCCAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAG
ATTATAGGGCCCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCC
GCAGGATCCGCAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGT
CATCCCCTCGTGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTG
CCCAGGGTCAACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCAC
CGCTCCCAGCAGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGC
CCCGGGATCGCAACTATGCAAGCGATGCGCAGCAGACTACCAATCATATG
AACTGCAATGCTGGTGGCTATAATGCCGAGCCCAAGCAACAGGCATATCA
ATCTAGGCGCTTGTCCAGCTCCTCCAACGCAGATGTCCTCACCATCTGTG
CTGGCACACAGACCGATCCCTTCAACCCATCTCCTCCGCGAAAATCACTG
CCCCAGGTTGTCTATTCCGACATCGACGTCAGCAACTTGGCCAATAAGAG
TGATCTGGCGGCTCTGGTATCCCTTGTGGAGTCCGTGCGCCATGAGCAGC
AACAGCTTCGGAATCTCTGCGAGATGATTTTGGAGCAACAGCAGCGAGCG
AAACCCGAAGCCATTTCAAAAGCCAGCAGTACCACTGGCACCCAGTGCGA
TATTCTGACCACCAATCAAGCAGGTAGACGCTTGTCTCCCATTATGCAGG
ATTACATAGCAGAGGAGGAGGAACCATTGCCGCCGCCACA
BS05290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 92..915 | 17..840 | 4120 | 100 | Plus |
| ana2-RB | 1429 | CG8262-RB | 92..912 | 17..840 | 4065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8899367..8900120 | 770..17 | 3770 | 100 | Minus |
| 2R | 25286936 | 2R | 8899246..8899317 | 840..769 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:01:03 has no hits.
BS05290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:09 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:21 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:49 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 87..914 | 12..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:56 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 87..914 | 12..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:56 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8899247..8899315 | 771..839 | 100 | <- | Minus |
| 2R | 8899367..8900125 | 12..770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:49 Download gff for
BS05290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786752..4786820 | 771..839 | 100 | <- | Minus |
| arm_2R | 4786872..4787630 | 12..770 | 99 | | Minus |
BS05290.complete Sequence
1295 bp (1295 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635093
> BS05290.complete
GAAGTTATCAGTCGACATGTTTGTTCCCGAAACGGAGGATATGCTGCCCA
GACTAGCGCCCAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAG
ATTATAGGGCCCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCC
GCAGGATCCGCAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGT
CATCCCCTCGTGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTG
CCCAGGGTCAACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCAC
CGCTCCCAGCAGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGC
CCCGGGATCGCAACTATGCAAGCGATGCGCAGCAGACTACCAATCATATG
AACTGCAATGCTGGTGGCTATAATGCCGAGCCCAAGCAACAGGCATATCA
ATCTAGGCGCTTGTCCAGCTCCTCCAACGCAGATGTCCTCACCATCTGTG
CTGGCACACAGACCGATCCCTTCAACCCATCTCCTCCGCGAAAATCACTG
CCCCAGGTTGTCTATTCCGACATCGACGTCAGCAACTTGGCCAATAAGAG
TGATCTGGCGGCTCTGGTATCCCTTGTGGAGTCCGTGCGCCATGAGCAGC
AACAGCTTCGGAATCTCTGCGAGATGATTTTGGAGCAACAGCAGCGAGCG
AAACCCGAAGCCATTTCAAAAGCCAGCAGTACCACTGGCACCCAGTGCGA
TATTCTGACCACCAATCAAGCAGGTAGACGCTTGTCTCCCATTATGCAGG
ATTACATAGCAGAGGAGGAGGAACCATTGCCGCCGCCACAAGCACGAGTG
ATTCCTCAGTTTCCGTCTCCTCGACCACATCCGCCGATCGCCCAATCTAC
GGGCTACCGGGCCAATACGCCTCAGGCGAAGCGGATCCCTCAACTGGCCA
AGCCCAACACCGAGAAGAGCATGGTGATGAACGAGCTGGCGCTGAAATAC
TTGCGCCAGCCAGTGGATGAGTTGATGAAGGATATGCGCCTGGGGGCGTC
GCCGAAGTCCCCTAATCCAGAGCCACTGCGTCCGATCGACAACATAGGCC
ACGCGCAGAGTCCAAACGACATATCCAATGCTTCGTACAAGTATCTCAAA
AAATACCGTCTGCTGCCCGAGGAGCAACTGGAGCCGGTGTGTCCACAATC
TCCCATGGCGGCGACCGCCCCTTCGCCACATATTCAACTGGACTTGGAGA
ATATCAGGAACCAGCCGAAGCTGTTGTGAAAGCTTTCTAGACCAT
BS05290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1263 | CG8262-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| ana2-RB | 1260 | CG8262-PB | 1..1260 | 17..1279 | 6235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 92..1358 | 17..1283 | 6335 | 100 | Plus |
| ana2-RB | 1429 | CG8262-RB | 92..1355 | 17..1283 | 6255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8899367..8900120 | 770..17 | 3770 | 100 | Minus |
| 2R | 25286936 | 2R | 8898803..8899317 | 1283..769 | 2575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:44 has no hits.
BS05290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:51 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:55 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 77..1353 | 12..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:46 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 98..1353 | 23..1278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:51 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 77..1353 | 12..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:06 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 98..1353 | 23..1278 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:06 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8898808..8899315 | 771..1278 | 100 | <- | Minus |
| 2R | 8899367..8900114 | 23..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:46 Download gff for
BS05290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786313..4786820 | 771..1278 | 100 | <- | Minus |
| arm_2R | 4786872..4787619 | 23..770 | 100 | | Minus |
BS05290.pep Sequence
Translation from 16 to 1278
> BS05290.pep
MFVPETEDMLPRLAPRPSAAVPMGHTNEIIGPTVPEVSILFGQPPQDPQM
QPQQPNHAHQESSPRAAPTFASWKKQMLPRVNFSPILATELGPRTAPSSN
SPCSSKEYQVMPRDRNYASDAQQTTNHMNCNAGGYNAEPKQQAYQSRRLS
SSSNADVLTICAGTQTDPFNPSPPRKSLPQVVYSDIDVSNLANKSDLAAL
VSLVESVRHEQQQLRNLCEMILEQQQRAKPEAISKASSTTGTQCDILTTN
QAGRRLSPIMQDYIAEEEEPLPPPQARVIPQFPSPRPHPPIAQSTGYRAN
TPQAKRIPQLAKPNTEKSMVMNELALKYLRQPVDELMKDMRLGASPKSPN
PEPLRPIDNIGHAQSPNDISNASYKYLKKYRLLPEEQLEPVCPQSPMAAT
APSPHIQLDLENIRNQPKLL*
BS05290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-PA | 420 | CG8262-PA | 1..420 | 1..420 | 2200 | 100 | Plus |
| ana2-PB | 419 | CG8262-PB | 1..419 | 1..420 | 2184 | 99.8 | Plus |
